Transcriptional reprogramming of gene expression in bovine somatic cell chromatin transfer embryos

BMC Genomics

Volumn 10, Issue , 2009, Pages

  Rodriguez Osorio, Nelida ^a,d   Wang, Zhongde ^b   Kasinathan, Poothappillai ^b   Page, Grier P ^c   Robl, James M ^b   Memili, Erdogan ^a  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

^b Hematech Incorporated   (United States)

^c UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

^d UNIVERSIDAD DE ANTIOQUIA   (Colombia)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; BLASTOCYTE; CELL NUCLEUS TRANSPLANTATION; CELL SHAPE; CHROMATIN; CLONE; CONTROLLED STUDY; COW; CYTOSKELETON; EMBRYO; EMBRYO TRANSFER; FERTILIZATION IN VITRO; GENE EXPRESSION; GENETIC TRANSCRIPTION; MICROARRAY ANALYSIS; MOLECULAR CLONING; NONHUMAN; NUCLEAR REPROGRAMMING; NUCLEOTIDE SEQUENCE; REGULATORY MECHANISM; RNA ISOLATION; SOMATIC CELL; UPREGULATION; ANIMAL; ANIMAL EMBRYO; BLASTOCYST; CATTLE; CELL LINE; CLONING; CLUSTER ANALYSIS; COMPARATIVE STUDY; CYTOLOGY; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC EPIGENESIS; GENETICS; METABOLISM; OOCYTE; PRENATAL DEVELOPMENT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANIMALIA; BOVINAE;

ANIMALS; BLASTOCYST; CATTLE; CELL LINE; CLONING, ORGANISM; CLUSTER ANALYSIS; EMBRYO, MAMMALIAN; EPIGENESIS, GENETIC; FERTILIZATION IN VITRO; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; NUCLEAR REPROGRAMMING; NUCLEAR TRANSFER TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OOCYTES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EID: 65649126673     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-190     Document Type: Article

References (55)

1. Memili E First NL Zygotic and embryonic gene expression in cow: A review of timing and mechanisms of early gene expression as compared with other species Zygote 2000, 8(1):87-96. 10840878
2. Whitworth K Springer GK Forrester LJ Spollen WG Ries J Lamberson WR Bivens N Murphy CN Mathialagan N Green JA et al.: Developmental expression of 2489 gene clusters during pig embryogenesis: An expressed sequence tag project Biol Reprod 2004, 71(4):1230-1243. 15175238
3. Latham KE Schultz RM Embryonic genome activation Front Biosci 2001, 6:D748-759. 11401780
4. Han YM Kang YK Koo DB Lee KK Nuclear reprogramming of cloned embryos produced in vitro Theriogenology 2003, 59(1):33-44. 12499016
5. Vajta G Gjerris M Science and technology of farm animal cloning: State of the art Anim Reprod Sci 2006, 92(3-4):211-230. 16406426
6. Prather RS Nuclear remodeling and nuclear reprogramming for making transgenic pigs by nuclear transfer Adv Exp Med Biol 2007, 591:1-13. 17176551
7. Ng RK Gurdon JB Epigenetic memory of active gene transcription is inherited through somatic cell nuclear transfer Proceedings of the National Academy of Sciences of the United States of America 2005, 102(6):1957-1962. 548545 15684086
8. Sullivan EJ Kasinathan S Kasinathan P Robl JM Collas P Cloned calves from chromatin remodeled in vitro Biol Reprod 2004, 70(1):146-153. 13679310
9. Zhou W Xiang T Walker S Farrar V Hwang E Findeisen B Sadeghieh S Arenivas F Abruzzese RV Polejaeva I Global gene expression analysis of bovine blastocysts produced by multiple methods Mol Reprod Dev 2008, 75(5):744-58. 17886272
10. Bourc'his D Le Bourhis D Patin D Niveleau A Comizzoli P Renard JP Viegas-Pequignot E Delayed and incomplete reprogramming of chromosome methylation patterns in bovine cloned embryos Curr Biol 2001, 11(19):1542-1546. 11591324
11. Kang YK Koo DB Park JS Choi YH Chung AS Lee KK Han YM Aberrant methylation of donor genome in cloned bovine embryos Nat Genet 2001, 28(2):173-177. 11381267
12. Dean W Santos F Stojkovic M Zakhartchenko V Walter J Wolf E Reik W Conservation of methylation reprogramming in mammalian development: aberrant reprogramming in cloned embryos Proceedings of the National Academy of Sciences of the United States of America 2001, 98(24):13734-13738. 61110 11717434
13. Santos F Zakhartchenko V Stojkovic M Peters A Jenuwein T Wolf E Reik W Dean W Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos Curr Biol 2003, 13(13):1116-1121. 12842010
14. Enright BP Kubota C Yang X Tian XC Epigenetic characteristics and development of embryos cloned from donor cells treated by trichostatin A or 5-aza-2′-deoxycytidine Biol Reprod 2003, 69(3):896-901. 12748129
15. Smith SL Everts RE Tian XC Du F Sung LY Rodriguez-Zas SL Jeong BS Renard JP Lewin HA Yang X Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning Proceedings of the National Academy of Sciences of the United States of America 2005, 102(49):17582-17587. 1308920 16314565
16. Somers J Smith C Donnison M Wells DN Henderson H McLeay L Pfeffer PL Gene expression profiling of individual bovine nuclear transfer blastocysts Reproduction 2006, 131(6):1073-1084. 16735546
17. Daniels R Hall V Trounson AO Analysis of gene transcription in bovine nuclear transfer embryos reconstructed with granulosa cell nuclei Biol Reprod 2000, 63(4):1034-1040. 10993824
18. Niemann H Wrenzycki C Lucas-Hahn A Brambrink T Kues WA Carnwath JW Gene expression patterns in bovine in vitro-produced and nuclear transfer-derived embryos and their implications for early development Cloning Stem Cells 2002, 4(1):29-38. 12006154
19. Hall VJ Ruddock NT French AJ Expression profiling of genes crucial for placental and preimplantation development in bovine in vivo, in vitro, and nuclear transfer blastocysts Mol Reprod Dev 2005, 72(1):16-24. 15898073
20. Pfister-Genskow M Myers C Childs LA Lacson JC Patterson T Betthauser JM Goueleke PJ Koppang RW Lange G Fisher P et al.: Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: Improper reprogramming of genes required for development Biol Reprod 2005, 72(3):546-555. 15483223
21. Beyhan Z Forsberg EJ Eilertsen KJ Kent-First M First NL Gene expression in bovine nuclear transfer embryos in relation to donor cell efficiency in producing live offspring Mol Reprod Dev 2007, 74(1):18-27. 16941691
22. Beyhan Z Ross PJ Iager AE Kocabas AM Cunniff K Rosa GJ Cibelli JB Transcriptional reprogramming of somatic cell nuclei during preimplantation development of cloned bovine embryos Dev Biol 2007, 305(2):637-649. 17359962
23. Boiani M Eckardt S Scholer HR McLaughlin KJ Oct4 distribution and level in mouse clones: Consequences for pluripotency Genes Dev 2002, 16(10):1209-1219. 186284 12023300
24. Smith C Berg D Beaumont S Standley NT Wells DN Pfeffer PL Simultaneous gene quantitation of multiple genes in individual bovine nuclear transfer blastocysts Reproduction 2007, 133(1):231-242. 17244749
25. Cibelli JB Stice SL Golueke PJ Kane JJ Jerry J Blackwell C Ponce de Leon FA Robl JM Cloned transgenic calves produced from nonquiescent fetal fibroblasts Science 1998, 280(5367):1256-1258. 9596577
26. Wang B Zhou J Specific genetic modifications of domestic animals by gene targeting and animal cloning Reprod Biol Endocrinol 2003, 1:103. 305327 14614774
27. Hill JR Winger QA Long CR Looney CR Thompson JA Westhusin ME Development rates of male bovine nuclear transfer embryos derived from adult and fetal cells Biol Reprod 2000, 62(5):1135-1140. 10775159
28. Hill JR Winger QA Burghardt RC Westhusin ME Bovine nuclear transfer embryo development using cells derived from a cloned fetus Anim Reprod Sci 2001, 67(1-2):17-26. 11408110
29. Liu L Shin T Pryor JH Kraemer D Westhusin ME Regenerated bovine feta fibroblasts support high blastocyst development following nuclear transfer Cloning 2001, 3(2):51-58. 11900639
30. Kuroiwa Y Kasinathan P Matsushita H Sathiyaselan J Sullivan EJ Kakitani M Tomizuka K Ishida I Robl JM Sequential targeting of the genes encoding immunoglobulin-mu and prion protein in cattle Nat Genet 2004, 36(7):775-780. 15184897
31. Cho SK Kim JH Park JY Choi YJ Bang JI Hwang KC Cho EJ Sohn SH Uhm SJ Koo DB et al.: Serial cloning of pigs by somatic cell nuclear transfer: Restoration of phenotypic normality during serial cloning Dev Dyn 2007, 236(12):3369-3382. 17849457
32. Fujimura T Murakami H Kurome M Takahagi Y Shigehisa T Nagashima H Effects of Recloning on the Efficiency of Production of alpha1,3-Galactosyltransferase Knockout Pigs J Reprod Dev 2008, 54(1):58-62. 18094530
33. Wakayama T Shinkai Y Tamashiro KL Niida H Blanchard DC Blanchard RJ Ogura A Tanemura K Tachibana M Perry AC et al.: Cloning of mice to six generations Nature 2000, 407(6802):318-319. 11014179
34. Peura TT Lane MW Lewis IM Trounson AO Development of bovine embryo-derived clones after increasing rounds of nuclear recycling Mol Reprod Dev 2001, 58(4):384-389. 11241774
35. Kubota C Tian XC Yang X Serial bull cloning by somatic cell nuclear transfer Nat Biotechnol 2004, 22(6):693-694. 15156155
36. Zakhartchenko V Mueller S Alberio R Schernthaner W Stojkovic M Wenigerkind H Wanke R Lassnig C Mueller M Wolf E et al.: Nuclear transfer in cattle with non-transfected and transfected fetal or cloned transgenic fetal and postnatal fibroblasts Mol Reprod Dev 2001, 60(3):362-369. 11599047
37. Persson S Wei H Milne J Page GP Somerville CR Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets Proceedings of the National Academy of Sciences of the United States of America 2005, 102(24):8633-8638. 1142401 15932943
38. Wrenzycki C Herrmann D Carnwath JW Niemann H Alterations in the relative abundance of gene transcripts in preimplantation bovine embryos cultured in medium supplemented with either serum or PVA Mol Reprod Dev 1999, 53(1):8-18. 10230812
39. McEvoy TG Manipulation of domestic animal embryos and implications for development Reprod Domest Anim 2003, 38(4):268-275. 12887566
40. Wrenzycki C Herrmann D Lucas-Hahn A Lemme E Korsawe K Niemann H Gene expression patterns in in vitro-produced and somatic nuclear transfer-derived preimplantation bovine embryos: Relationship to the large offspring syndrome? Anim Reprod Sci 2004, 82-83:593-603. 15271482
41. Lazzari G Wrenzycki C Herrmann D Duchi R Kruip T Niemann H Galli C Cellular and molecular deviations in bovine in vitro-produced embryos are related to the large offspring syndrome Biol Reprod 2002, 67(3):767-775. 12193383
42. Oback B Wells DN Cloning cattle: The methods in the madness Adv Exp Med Biol 2007, 591:30-57. 17176553
43. Vignon X Zhou Q Renard JP Chromatin as a regulative architecture of the early developmental functions of mammalian embryos after fertilization or nuclear transfer Cloning Stem Cells 2002, 4(4):363-377. 12626100
44. Suteevun T Smith SL Muenthaisong S Yang X Parnpai R Tian XC Anomalous mRNA levels of chromatin remodeling genes in swamp buffalo (Bubalus bubalis) cloned embryos Theriogenology 2006, 65(9):1704-1715. 16256185
45. Stringfellow DA Seidel SM Manual of the International Embryo Transfer Society: A Procedural Guide and General Information for the Use of Embryo Transfer Technology Emphasizing Sanitary Procedures Savoy, Illinois: International Embryo Transfer Society 3 1998.
46. Page GP Edwards JW Gadbury GL Yelisetti P Wang J Trivedi P Allison DB The PowerAtlas: A power and sample size atlas for microarray experimental design and research BMC Bioinformatics 2006, 7:84. 1395338 16504070
47. Trivedi P Edwards JW Wang J Gadbury GL Srinivasasainagendra V Zakharkin SO KAm K Mehta T Brand JP Patki A et al.: HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data BMC Bioinformatics 2005, 6:86. 1087834 15813968
48. Chen DT A graphical approach for quality control of oligonucleotide array data J Biopharm Stat 2004, 14(3):591-606. 15468754
49. Benjamini Y Drai D Elmer G Kafkafi N Golani I Controlling the false discovery rate in behavior genetics research Behav Brain Res 2001, 125(1-2):279-284. 11682119
50. Liu G Loraine AE Shigeta R Cline M Cheng J Valmeekam V Sun S Kulp D Siani-Rose MA NetAffx: Affymetrix probesets and annotations Nucleic Acids Res 2003, 31(1):82-86. 165568 12519953
51. AgBAse GOAnna AgBase Mississippi State University
52. AgBAse GOSlimViewer
53. Pfaffl MW A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res 2001, 29(9):e45. 55695 11328886
54. Pfaffl MW Horgan GW Demple L Relative expression software tool (REST) for group-wise comparison and statisitcal analysis of relative expression results in real-time PCR Nucleic Acids Res 2002, 30(9):e36. 113859 11972351
55. Misirlioglu M Page GP Sagirkaya H Kaya A Parrish JJ First NL Memili E Dynamics of global transcriptome in bovine matured oocytes and preimplantation embryos Proceedings of the National Academy of Sciences of the United States of America 2006, 103(50):18905-18910. 1748150 17142320