Gene expression profiling of individual bovine nuclear transfer blastocysts

Reproduction

Volumn 131, Issue 6, 2006, Pages 1073-1084

  Somers, Joanna ^a,b   Smith, Craig ^a   Donnison, Martyn ^a   Wells, David N ^a   Henderson, Harold ^a   McLeay, Lance ^b   Pfeffer, Peter L ^a  

^a RUAKURA RESEARCH CENTRE   (New Zealand)

^b UNIVERSITY OF WAIKATO   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

CARRIER PROTEIN; COMPLEMENTARY DNA; CYTOKERATIN 18; DYE; RNA; SOLUTE CARRIER FAMILY 16; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BLASTOCYST; CELL FUNCTION; CELL NUCLEUS TRANSPLANTATION; CONTROLLED STUDY; DNA ISOLATION; DNA LIBRARY; EMBRYO; FEMALE; GENE AMPLIFICATION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE IDENTIFICATION; GENE MUTATION; GENETIC SCREENING; GENETIC TRANSCRIPTION; IN VITRO PROPAGATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STATISTICAL SIGNIFICANCE; STOCHASTIC MODEL; UNINDEXED SEQUENCE;

ANIMALS; BLASTOCYST; CATTLE; CLONING, ORGANISM; DNA, COMPLEMENTARY; EMBRYO CULTURE TECHNIQUES; FEMALE; FERTILIZATION IN VITRO; FIBROBLASTS; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE LIBRARY; HYBRID CELLS; MALE; NUCLEAR TRANSFER TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC;

BOS TAURUS;

EID: 33745198704     PISSN: 14701626     EISSN: None     Source Type: Journal    
DOI: 10.1530/rep.1.00967     Document Type: Article

References (53)

1. Baird D, Johnstone P & Wilson T 2004 Normalization of microarray data using a spatial mixed model analysis which includes splines. Bioinformatics 20 3196-3205.
2. Boiani M, Eckardt S, Scholer HR & McLaughlin KJ 2002 Oct4 distribution and level in mouse clones: consequences for pluripotency. Genes and Development 16 1209-1219.
3. Bortvin A, Eggan K, Skaletsky H, Akutsu H, Berry DL, Yanagimachi R, Page DC & Jaenisch R 2003 Incomplete reactivation of Oct4-related genes in mouse embryos cloned from somatic nuclei. Development 130 1673-1680.
4. Bourc'his D, Le Bourhis D, Patin D, Niveleau A, Comizzoli P, Renard JP & Viegas-Pequignot E 2001 Delayed and incomplete reprogramming of chromosome methylation patterns in bovine cloned embryos. Current Biology 11 1542-1546.
5. Bustin SA 2000 Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. Journal of Molecular Endocrinology 25 169-193.
6. Camargo LS, Powell AM, Filho VR & Wall RJ 2005 Comparison of gene expression in individual preimplantation bovine embryos produced by in vitro fertilisation or somatic cell nuclear transfer. Reproduction, Fertility and Development 17 487-496.
7. Chisholm JC & Houliston E 1987 Cytokeratin filament assembly in the preimplantation mouse embryo. Development 101 565-582.
8. Daniels R, Hall V & Trounson AO 2000 Analysis of gene transcription in bovine nuclear transfer embryos reconstructed with granulosa cell nuclei. Biology of Reproduction 63 1034-1040.
9. Daniels R, Hall VJ, French AJ, Korfiatis NA & Trounson AO 2001 Comparison of gene transcription in cloned bovine embryos produced by different nuclear transfer techniques. Molecular Reproduction and Development 60 281-288.
10. De Sousa PA, King T, Harkness L, Young LE, Walker SK & Wilmut I 2001 Evaluation of gestational deficiencies in cloned sheep fetuses and placentae. Biology of Reproduction 65 23-30.
11. Dean W, Santos F, Stojkovic M, Zakhartchenko V, Walter J, Wolf E & Reik W 2001 Conservation of methylation reprogramming in mammalian development: aberrant reprogramming in cloned embryos. PNAS 98 13734-13738.
12. Diez-Tascón C, Keane OM, Wilson T, Zadissa A, Hyndman DL, Baird DB, McEwan JC & Crawford AM 2005 Microarray analysis of selection lines from outbred populations to identify genes involved with nematode parasite resistance in sheep. Physiological Genomics 21 59-69.
13. Donnison M & Pfeffer PL 2004 Isolation of genes associated with developmentally competent bovine oocytes and quantitation of their levels during development. Biology of Reproduction 71 1813-1821.
14. Eck P, Erichsen HC, Taylor JG, Yeager M, Hughes AL, Levine M & Chanock S 2004 Comparison of the genomic structure and variation in the two human sodium-dependent vitamin C transporters, SLC23A1 and SLC23A2. Human Genetics 115 285-294.
15. Gao S, Chung YG, Williams JW, Riley J, Moley K & Latham KE 2003 Somatic cell-like features of cloned mouse embryos prepared with cultured myoblast nuclei. Biology of Reproduction 69 48-56.
16. Garcia CK, Goldstein JL, Pathak RK, Anderson RG & Brown MS 1994 Molecular characterization of a membrane transporter for lactate, pyruvate, and other monocarboxylates: implications for the Cori cycle. Cell 76 865-873.
17. Gibbons J, Arat S, Rzucidlo J, Miyoshi K, Waltenburg R, Respess D, Venable A & Stice S 2002 Enhanced survivability of cloned calves derived from roscovitine-treated adult somatic cells. Biology of Reproduction 66 895-900.
18. Hill JR, Burghardt RC, Jones K, Long CR, Looney CR, Shin T, Spencer TE, Thompson JA, Winger QA & Westhusin ME 2000 Evidence for placental abnormality as the major cause of mortality in first-trimester somatic cell cloned bovine fetuses. Biology of Reproduction 63 1787-1794.
19. Hochedlinger K & Jaenisch R 2002 Nuclear transplantation: lessons from frogs and mice. Current Opinion in Cell Biology 14 741-748.
20. Humpherys D, Eggan K, Akutsu H, Hochedlinger K, Rideout WM 3rd, Biniszkiewicz D, Yanagimachi R & Jaenisch R 2001 Epigenetic instability in ES cells and cloned mice. Science 293 95-97.
21. Kang YK, Koo DB, Park JS, Choi YH, Chung AS, Lee KK & Han YM 2001 Aberrant methylation of donor genome in cloned bovine embryos. Nature Genetics 28 173-177.
22. Kang YK, Park JS, Koo DB, Choi YH, Kim SU, Lee KK & Han YM 2002 Limited demethylation leaves mosaic-type methylation states in cloned bovine pre-implantation embryos. Embo J 21 1092-1100.
23. Kruip TAM & den Daas JHG 1997 In vitro produced and cloned embryos: effects on pregnancy, parturition and offspring. Theriogenology 47 43-52.
24. Lanza RP, Cibelli JB, Faber D, Sweeney RW, Henderson B, Nevala W, West MD & Wettstein PJ 2001 Cloned cattle can be healthy and normal. Science 294 1893-1894.
25. Niwa H, Miyazaki J & Smith AG 2000 Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nature Genetics 24 372-376.
26. Oback B, Wiersema AT, Gaynor P, Laible G, Tucker FC, Oliver JE, Miller AL, Troskie HE, Wilson KL, Forsyth JT et al. 2003 Cloned cattle derived from a novel zona-free embryo reconstruction system. Cloning Stem Cells 5 3-12.
27. Ogonuki N, Inoue K, Yamamoto Y, Noguchi Y, Tanemura K, Suzuki O, Nakayama H, Doi K, Ohtomo Y, Satoh M et al. 2002 Early death of mice cloned from somatic cells. Nature Genetics 30 253-254.
28. Ogura A, Inoue K, Ogonuki N, Lee J, Kohda T & Ishino F 2002 Phenotypic effects of somatic cell cloning in the mouse. Cloning Stem Cells 4 397-405.
29. Pace MM, Augenstein ML, Betthauser JM, Childs LA, Eilertsen KJ, Enos JM, Forsberg EJ, Golueke PJ, Graber DF, Kemper JC et al. 2002 Ontogeny of cloned cattle to lactation. Biology of Reproduction 67 334-339.
30. Park SH, Park SB & Kim NH 2003 Expression of early development-related genes in bovine nuclear transferred and fertilized embryos. Zygote 11 355-360.
31. Pfister-Genskow M, Myers C, Childs LA, Lacson JC, Patterson T, Betthauser JM, Goueleke PJ, Koppang RW, Lange G, Fisher P et al. 2005 Identification of differentially expressed genes in individual bovine preimplantation embryos produced by nuclear transfer: improper reprogramming of genes required for development. Biology of Reproduction 72 546-555.
32. Rhind SM, King TJ, Harkness LM, Bellamy C, Wallace W, de Sousa P & Wilmut I 2003 Cloned lambs - lessons from pathology. Nature Biotechnology 21 744-745.
33. Rieger D, Loskutoff NM & Betteridge KJ 1992 Developmentally related changes in the uptake and metabolism of glucose, glutamine and pyruvate by cattle embryos produced in vitro. Reproduction, Fertility and Development 4 547-557.
34. Robertson I & Nelson R 1998 Certification and identification of the embryo. In Manual of the International Embryo Transfer Society, pp 103-134. Eds AD Stringfellow & SM Seidel. Illinois: International Embryo Transfer Society.
35. Santos F, Zakhartchenko V, Stojkovic M, Peters A, Jenuwein T, Wolf E, Reik W & Dean W 2003 Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos. Current Biology 13 1116-1121.
36. Shimozawa N, Ono Y, Kimoto S, Hioki K, Araki Y, Shinkai Y, Kono T & Ito M 2002 Abnormalities in cloned mice are not transmitted to the progeny. Genesis 34 203-207.
37. Sirover MA 1999 New insights into an old protein: the functional diversity of mammalian glyceraldehyde-3-phosphate dehydrogenase. Biochimica et Biophysica Acta 1432 159-184.
38. Smeaton DC, McGowan LT, Scott ML, Tervit HR & Cameron CA 2003 Survival of in vitro produced cattle embryos from embryo transfer to weaning. Proceedings of the New Zealand Society of Animal Production 63 57-60.
39. Sundararaj KP, Wood RE, Ponnusamy S, Salas AM, Szulc Z, Bielawska A, Obeid LM, Hannun YA & Ogretmen B 2004 Rapid shortening of telomere length in response to ceramide involves the inhibition of telomere binding activity of nuclear glyceraldehyde-3-phosphate dehydrogenase. Journal of Biological Chemistry 279 6152-6162.
40. Tamashiro KL, Wakayama T, Akutsu H, Yamazaki Y, Lachey JL, Wortman MD, Seeley RJ, D'Alessio DA, Woods SC, Yanagimachi R et al. 2002 Cloned mice have an obese phenotype not transmitted to their offspring. Nature Medicine 8 262-267.
41. Thompson JG, McNaughton C, Gasparrini B, McGowan LT & Tervit HR 2000 Effect of inhibitors and uncouplers of oxidative phosphorylation during compaction and blastulation of bovine embryos cultured in vitro. Journal of Reproduction and Fertility 118 47-55.
42. Tisdale EJ 2002 Glyceraldehyde-3-phosphate dehydrogenase is phosphorylated by protein kinase Ciota/lambda and plays a role in microtubule dynamics in the early secretory pathway. Journal of Biological Chemistry 277 3334-3341.
43. Wang E, Miller LD, Ohnmacht GA, Liu ET & Marincola FM 2000 High-fidelity mRNA amplification for gene profiling. Nature Biotechnology 18 457-459.
44. Waseem A, Alexander CM, Steel JB & Lane EB 1990 Embryonic simple epithelial keratins 8 and 18: chromosomal location emphasizes difference from other keratin pairs. New Biologist 2 464-478.
45. Wells DN, Forsyth JT, McMillan V & Oback B 2004 The health of somatic cell cloned cattle and their offspring. Cloning Stem Cells 6 101-110.
46. Wells DN, Laible G, Tucker FC, Miller AL, Oliver JE, Xiang T, Forsyth JT, Berg MC, Cockrem K, L'Huillier PJ et al. 2003 Coordination between donor cell type and cell cycle stage improves nuclear cloning efficiency in cattle. Theriogenology 59 45-59.
47. Wells DN, Misica PM, Day TA & Tervit HR 1997 Production of cloned lambs from an established embryonic cell line: a comparison between in vivo- and in vitro-matured cytoplasts. Biology of Reproduction 57 385-393.
48. Wilmut I, Beaujean N, de Sousa P, Dinnyes A, King TJ, Paterson LA, Wells DN & Young LE 2002 Somatic cell nuclear transfer. Nature 419 583-586.
49. Wrenzycki C, Herrmann D, Lucas-Hahn A, Korsawe K, Lemme E & Niemann H 2005 Messenger RNA expression patterns in bovine embryos derived from in vitro procedures and their implications for development. Reproduction, Fertility and Development 17 23-35.
50. Wrenzycki C, Wells D, Herrmann D, Miller A, Oliver J, Tervit R & Niemann H 2001 Nuclear transfer protocol affects messenger RNA expression patterns in cloned bovine blastocysts. Biology of Reproduction 65 309-317.
51. Zakhartchenko V, Alberio R, Stojkovic M, Prelle K, Schernthaner W, Stojkovic P, Wenigerkind H, Wanke R, Duchler M, Steinborn R et al. 1999 Adult cloning in cattle: potential of nuclei from a permanent cell line and from primary cultures. Molecular Reproduction and Development 54 264-272.
52. Zakhartchenko V, Mueller S, Alberio R, Schernthaner W, Stojkovic M, Wenigerkind H, Wanke R, Lassnig C, Mueller M, Wolf E et al. 2001 Nuclear transfer in cattle with non-transfected and transfected fetal or cloned transgenic fetal and postnatal fibroblasts. Molecular Reproduction and Development 60 362-369.
53. Zeng F, Baldwin DA & Schultz RM 2004 Transcript profiling during preimplantation mouse development. Developmental Biology 272 483-496.