From plant-microbe interactions to symbiogenetics: A universal paradigm for the interspecies genetic integration

Annals of Applied Biology

Volumn 154, Issue 3, 2009, Pages 341-350

  Tikhonovich, I A ^a   Provorov, N A ^a  

^a ALL RUSSIA RESEARCH INSTITUTE FOR AGRICULTURAL MICROBIOLOGY   (Russian Federation)

Author keywords

'gene for gene' systems; Arbuscular mycorrhiza; Mutualistic and antagonistic symbioses; Plant microbe interactions; Superorganism genetic systems; Sustainable plant production; Symbiogenetics; Symbiotic N2 fixation

Indexed keywords

ALTERNATIVE AGRICULTURE; ARBUSCULAR MYCORRHIZA; CROP PRODUCTION; ECOSYSTEM MANAGEMENT; GENETIC STRUCTURE; INTERSPECIFIC INTERACTION; MICROBIAL ACTIVITY; SYMBIOSIS;

ARBUSCULAR;

EID: 65549129612     PISSN: 00034746     EISSN: 17447348     Source Type: Journal    
DOI: 10.1111/j.1744-7348.2008.00306.x     Document Type: Review

References (71)

1. Akiyama K., Matsuzaki K., Hayashi H. (2005) Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi. Nature, 435, 824 827. (Pubitemid 40839733)
2. Bago B., Pfeffer P.E., Shacher-Hill Y. (2000) Carbon metabolism and transport in arbuscular mycorrhizas. Plant Physiology, 124, 949 957.
3. Balachandar D., Raja P., Kumar K., Sundaram S.P. (2007) Non-rhizobial nodulation in legumes. Biotechnology and Molecular Biology Review, 2, 49 57.
4. Barker S.J., Tagu D., Delp G. (1998) Regulation of root and fungal morphogenesis in mycorrhizal symbiosis. Plant Physiology, 116, 1201 1207. (Pubitemid 128500508)
5. Berg G., Krechel A., Ditz M., Faupel A., Ulrich A. Hallmann J. (2005) Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiology Ecology, 51, 215 229. (Pubitemid 40038381)
6. Bethlenfalvay G.I., Abu-Shakra S.S., Phillips D.A. (1978) Interdependence of nitrogen nutrition and photosynthesis in Pisum sativum L. II. Host plant response to nitrogen fixation by Rhizobium strains. Plant Physiology, 62, 131 133.
7. Beveridge C.A., Mathesius U., Rose R.J., Gresshoff P. (2007) Common regulatory themes in meristem development and whole-plant homeostasis. Current Opinions in Plant Biology, 10, 44 51. (Pubitemid 46073832)
8. Borisov A.Y., Danilova T.N., Koroleva T.A., Naumkina T.S., Pavlova Z.B., Pinaev A.G., Shtark O.Y., Tsyganov V.E., Voroshilova V.A., Zhernakov A.I., Zhukov V.A., Tikhonovich I.A. (2004) Pea (Pisum sativum L.) regulatory genes controlling development of nitrogen-fixing nodules and arbuscular mycorrhiza: fundamentals and application. Biologia, 59 (Suppl. 13 137 144.
9. Brewin N.J. (2004) Plant cell wall remodeling in the Rhizobium - legume symbiosis. Critical Reviews in Plant Science, 23, 1 24. (Pubitemid 39175486)
10. Brundrett M.C. (2002) Coevolution of roots and mycorrhizas of land plants. New Phytologist, 154, 275 304. (Pubitemid 34458302)
11. Cheng H.P., Walker G.C. (1998) Succinoglucan is required for initiation and elongation of infection threads during nodulation of alfalfa by Rhizobium meliloti. Journal of Bacteriology, 180, 5183 5191. (Pubitemid 28470947)
12. de Bary A. (1879) Die Erscheinung der Symbiose. Strassburg, France : Verlag Von Karl J. Trübner.
13. de Bruijn F.J., Davey M.E., Berges H., Krol E., Bruand C., Rüberg S., Capela D., Lauber E., Meilhoc E., Ampe F., Fourment J., Francez-Charlot A., Kahn D., Küster H., Liebe C., Pühler A., Weidner S., Batut J., Becker A. (2004) Genetics and genomics of nutrient deprivation-induced, microaerobic and symbiotic gene expression in Sinorhizobium meliloti. In Biology of Plant - Microbe Interactions. Volume 4, pp. 405 410. Eds I.A. Tikhonovich, B.J.J. Lugtenberg and N.A. Provorov. St. Petersburg, Russia : Biont.
14. Dessaux Y., Petit A., Farrand S., Murphy P.J. (1998) Opines and opine-like molecules involved in plant - Rhizobiaceae interactions. In The Rhizobiaceae. Molecular Biology of Model Plant-Associated Bacteria. pp. 173 197. Eds H.P. Spaink, A. Kondorosi and P.J.J. Hooykaas. Dordrecht : Kluwer Academic Publishers.
15. Douglas A.E. (1994) Symbiotic Interactions. Oxford : Oxford University Press.
16. Dyakov Y.T., Dzhavakhiya V., Korpela T. Eds (2007) Comprehensive and Molecular Phytopathology. Amsterdam, the Netherlands : Elsevier.
17. Flor H.H. (1946) Genetics of pathogenicity in Melampsora lini. Journal of Agricultural Research, 73, 335 357.
18. Franck W.L., Chang W.-S., Qiu J., Sugawara M., Sadowsky M.J., Smith S.A., Stacey G. (2008) Whole-genome transcriptomal profiling of Bradyrhizobium japonicum during chemoautotrophic growth. Journal of Bacteriology, 190, 6697 6705.
19. Gamas P., de Billy F., Truchet G. (1998) Symbiosis-specific expression of two Medicago truncatula nodulin genes, MtN1 and MtN13 encoding products homologous to plant defense proteins. Molecular Plant - Microbe Interactions, 11, 393 403. (Pubitemid 28314130)
20. Gianinazzi-Pearson V. (1996) Plant cell responses to arbuscular mycorrhizal fungi: getting to the roots of the symbiosis. The Plant Cell, 8, 1871 1883. (Pubitemid 27012411)
21. Hahn M., Mendgen K. (2001) Signal and nutrient exchange in biotrophic plant - fungus interfaces. Current Opinions in Plant Biology, 4, 322 327. (Pubitemid 32620715)
22. Hotopp J.C., Clark M.E., Oliveira D.C., Foster J.M., Fischer P., Torres M.C., Giebel J.D., Kumar N., Ishmael N., Wang S., Ingram J., Nene R.V., Shepard J., Tomkins J., Richards S., Spiro D.J., Ghedin E., Slatko B.E., Tettelin H., Werren J.H. (2007) Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science, 21, 1753 1756. (Pubitemid 47461840)
23. Janzen D.H. (1980) When is it coevolution? Evolution, 34, 611 612.
24. Jones K.M., Kobayashi H., Davies B.W., Taga M.E., Walker G.C. (2007) How rhizobial symbionts invade plants: the Sinorhizobium - Medicago model. Nature Reviews, 5, 619 633. (Pubitemid 47074117)
25. 2-fixing Azoarcus sp. strain BH72 upon diazosome formation. Journal of Bacteriology, 178, 5748 5754. (Pubitemid 26327677)
26. Kiers E.T., Rousseau R.A., West S.A., Denison R.F. (2003) Host sanctions and the legume-Rhizobium mutualism. Nature, 425, 78 81. (Pubitemid 37101720)
27. Kneip C., Lockhart P., Voß C., Maier U.-M. (2007) Nitrogen fixation in eukaryotes - new models for symbiosis. BMC Evolutions in Biology, 7, 55. (Pubitemid 46631446)
28. Lang B.F., Gray M.W., Burger G. (1999) Mitochondrial genome evolution and the origin of eukaryotes. Annual Review of Genetics, 33, 351 397. (Pubitemid 30083127)
29. Larcher W. (1976) Ökologie der Pflanzen. Stuttgart, Germany : Verlag Eugen Ulmer.
30. Law R., Lewis D.H. (1983) Biotic environments and the maintenance of sex - some evidence from mutualistic symbioses. Biological Journal of the Linnean Society, 20, 249 276.
31. Lederberg J., McCray A.T. (2001) 'Ome sweet' omics - a genealogical treasury of words. Scientist, 15, 8. (Pubitemid 33254147)
32. Leon P., Arroyo A., Mackenzie S. (1998) Nuclear control of plastid and mitochondrial development in higher plants. Annual Review of Plant Physiology and Plant Molecular Biology, 49, 453 480. (Pubitemid 28514500)
33. Loegering W.Q. (1978) Current concepts of inter-organismal genetics. Annual Review of Phytopathology, 16, 309 320.
34. Lopez M.F., Männer P., Willmann A., Hampp R., Nehls U. (2007) Increased trehalose biosynthesis in Hartig net hyphae of ectomycorrhizas. New Phytologist, 174, 389 398. (Pubitemid 46457378)
35. MacLean A.M., Finan T.M., Sadowsky M.J. (2007) Genomes of symbiotic nitrogen-fixing bacteria of legumes. Plant Physiology, 144, 615 622. (Pubitemid 46944729)
36. Madsen E.B., Madsen L.H., Radutoiu S., Olbryt M., Rakwalska M., Szczyglowski K., Sato S., Kaneko T., Tabata S., Sandal N., Stougaard J. (2003) A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signals. Nature, 425, 637 640. (Pubitemid 37280149)
37. Margulis L. (1993) Symbiosis in Cell Evolution. 2nd edn. New York, USA : W.H. Freeman and Co.
38. Margulis L., Sagan D. (2002) Acquiring Genomes. A Theory of the Origins of Species. Perseus Books Group.
39. Minerdi D., Bianciotto V., Bonfante P. (2002) Endosymbiotic bacteria in mycorrhizal fungi: from their morphology to genomic sequences. Plant and Soil, 244, 211 219.
40. Moon C.D., Craven K.D., Leuchtmann A., Clement S.L., Schardl C.L. (2004) Prevalence of interspecific hybrids amongst asexual fungal endophytes of grasses. Molecular Ecology, 13, 1455 1467. (Pubitemid 38688898)
41. Moran N.A. (2002) Genome evolution in symbiotic bacteria. ASM News, 68, 499 505.
42. Nester E., Wood D., Pantoja M., Liu P. (2004) Agrobacterium-plant interactions: unfinished business and continuing surprises. In Biology of Plant-Microbe Interactions. Volume 4, pp. 510 515. Eds I.A. Tikhonovich, B.J.J. Lugtenberg and N.A. Provorov. St. Petersburg, Russia : Biont.
43. Nutman P.S. (1946) Genetic factors concerned in the symbiosis of clover and nodule bacteria. Nature, 157, 463 465.
44. Ovtsyna A.O., Staehelin C. (2005) Bacterial signals required for the Rhizobium-legume symbiosis. Recent Research Developments in Microbiology, 7, 631 648.
45. Parbery D.G. (1996) Trophism and the ecology of fungi associated with plants. Biological Reviews, 71, 473 527. (Pubitemid 26283773)
46. Parsons R. (2002) Nodule infection and regulation in the Gunnera - Nostoc symbiosis. Proceedings of Royal Irish Academy, 102B, 41 43.
47. Provorov N.A., Tikhonovich I.A. (2003) Genetic resources for improving nitrogen fixation in legume - rhizobia symbiosis. Genetic Research in Crop Evolution, 50, 89 99. (Pubitemid 36639372)
48. Provorov N.A., Vorobyov N.I. (2008) Evolution of symbiotic bacteria in "plant - soil" systems: interplay of molecular and population mechanisms. In Progress in Environmental Microbiology. pp. 11 67. Ed. M.-B. Kim. New York, USA : Nova Science Publishers Inc.
49. Radutoiu S., Madsen L.H., Madsen E.B., Felle H.H., Umehara Y., Gronlund M., Sato S., Nakamura Y., Tabata S., Sandal N., Stougaard J. (2003) Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases. Nature, 425, 585 592. (Pubitemid 37280137)
50. Riesenfeld C.S., Schloss P.D., Handelsmann J. (2004) Metagenomics: genomic analysis of microbial communities. Annual Review of Genetics, 38, 525 552. (Pubitemid 40013737)
51. Sanchez L., Weidmann S., Arnould C., Bernard A.R., Gianinazzi S., Gianinazzi-Pearson V. (2005) Pseudomonas fluorescens and Glomus mosseae trigger DMI3-dependent activation of genes related to a signal transduction pathway in roots of Medicago truncatula. Plant Physiology, 139, 1065 1077. (Pubitemid 43907129)
52. Santos R., Herouart D., Sigaud S., Touati D., Puppo A. (2001) Oxidative burst in alfalfa - Sinorhizobium meliloti symbiotic interaction. Molecular Plant - Microbe Interactions, 14, 86 89. (Pubitemid 32062631)
53. Schardl C.L., Leuchtmann A., Spiering M.J. (2004) Symbioses of grasses with seedborne fungal endophytes. Annual Review of Plant Biology, 55, 315 340. (Pubitemid 38940935)
54. Schardl C.L., Craven K.D., Speakman S., Stromberg A., Lindstrom A., Yoshida R. (2008) A novel test for host-symbiont codivergence indicates ancient origin of fungal endophytes in grasses. Systematic Biology, 57, 483 498.
55. Schußler A. (2002) Molecular phylogeny, taxonomy and evolution of Geosiphon pyriformis and arbuscular mycorrhizal fungi. Plant and Soil, 244, 75 83.
56. Seckbach J. Ed 2002) Symbiosis: Mechanisms and Model Systems. Dordrecht : Kluwer Academic Publishers.
57. Sessitsch A., Howieson J.G., Perret X., Antoun H., Martinez-Romero E. (2002) Advances in Rhizobium research. Critical Reviews in Plant Science, 21, 323 378.
58. Sessitsch A., Reiter B., Berg G. (2004) Endophytic bacterial communities of field grown potato plants and their plant growth promoting abilities. Canadian Journal of Microbiology, 50, 239 249. (Pubitemid 38903411)
59. Smith S.E., Read D.J. (1997) Mycorrhizal Symbiosis. 2nd edn. London : Academic Press.
60. Streeter J.G. (1995) Integration of plant and microbial metabolism in nitrogen fixing systems. In Nitrogen Fixation: Fundamentals and Applications. pp. 67 76. Eds I.A. Tikhonovich, N.A. Provorov, V.I. Romanov and W.E. Newton. Dordrecht : Kluwer Academic Publishers.
61. Tanaka A., Christensen M.J., Takemoto D., Park P., Scott B. (2006) Reactive oxygen species play a role in regulating a fungus - perennial ryegrass mutualistic interaction. The Plant Cell, 12, 1052 1066. (Pubitemid 43956153)
62. Tikhonovich I.A., Provorov N.A. (2007) Cooperation of plants and microorganisms: getting closer to the genetic construction of sustainable agro-systems. Biotechnology Journal, 2, 833 848. (Pubitemid 47161988)
63. Tunlid A., Talbot N.J. (2002) Genomics of parasitic and symbiotic fungi. Current Opinions in Microbiology, 5, 513 519.
64. Turmel M., Otis C., Lemieux C. (2002) The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineages that lead to land plants. Proceedings of the National Academy of Sciences USA, 99, 11275 11280.
65. Udvardi M., Bock V., Colebatch G., Desbrosses G., Kloska S., Kopka J., Krause K., Krusell L., Ott T., Trevaskis B., Wandrey M. (2004) Genetic reorganization of legume transport and metabolism during symbiotic nitrogen fixation. In Biology of Plant - Microbe Interactions. Volume 4, pp. 490 492. Eds I.A. Tikhonovich, N.A. Provorov, V.I. Romanov and W.E. Newton. St Petersburg, Russia : Biont.
66. Valkonen J.P.T. (2008) Evolution of plant viruses: adaptation to hosts and vectors. Ecological Genetics, 6, 12 15.
67. Vanderplank J.E. (1982) Host - Pathogen Interaction in Plant Disease. New York : Academic Press.
68. Watson R.A., Pollack J.B. (2003) A computational model of symbiotic composition in evolutionary transitions. BioScience, 69, 187 209. (Pubitemid 36416597)
69. Weiskel T.C. (1998) Concepts of Symbiogenesis and the Emergence of Life-forms on Land. Harvard University Press.
70. Wiemken V. (2007) Trehalose synthesis in ectomycorrhizas - a driving force of carbon gain for fungi? New Phytologist, 174, 228 230. (Pubitemid 46457399)
71. Zook D. (2002) Prioritizing symbiosis to sustain biodiversity: are symbionts keystone species? In Symbiosis: Mechanisms and Model Systems. pp. 3 12. Ed. J. Seckbach. Dordrecht : Kluwer Academic Publishers.