-
2
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
Bairoch A Apweiler R Wu CH Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Natale DA O'Donovan C Redaschi N Yeh LSL The Universal Protein Resource (UniProt) Nucl Acids Res 2005, 33(suppl-1):D154-159 http://nar.oxfordjournals.org/cgi/content/full/35/ suppl_1/D193
-
(2005)
Nucl Acids Res
, vol.33
, Issue.SUPPL. 1
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.L.15
-
4
-
-
0034048878
-
A Discriminative Framework for Detecting Remote Protein Homologies
-
10.1089/10665270050081405 10890390
-
Jaakkola T Diekhans M Haussler D A Discriminative Framework for Detecting Remote Protein Homologies Journal of Computational Biology 2000, 7:95-114. 10.1089/10665270050081405 10890390
-
(2000)
Journal of Computational Biology
, vol.7
, pp. 95-114
-
-
Jaakkola, T.1
Diekhans, M.2
Haussler, D.3
-
5
-
-
85156187897
-
Mismatch String Kernels for SVM Protein Classification
-
Leslie CS Eskin E Weston J Noble WS Mismatch String Kernels for SVM Protein Classification NIPS 2002:1417-1424
-
(2002)
NIPS
, pp. 1417-1424
-
-
Leslie, C.S.1
Eskin, E.2
Weston, J.3
Noble, W.S.4
-
6
-
-
0031743421
-
Profile hidden Markov models
-
Eddy S Profile hidden Markov models Bioinformatics 1998, 14(9):755-763. http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/9/755 10.1093/bioinformatics/14.9.755 9918945
-
(1998)
Bioinformatics
, vol.14
, Issue.9
, pp. 755-763
-
-
Eddy, S.1
-
7
-
-
22544448378
-
Profile-based string kernels for remote homology detection and motif extraction
-
Kuang R Ie E Wang K Wang K Siddiqi M Freund Y Leslie C Profile-based string kernels for remote homology detection and motif extraction J Bioinform Comput Biol 2005, 3(3):527-550. http://www-users.cs.umn.edu/ ~kuang/paper/jbcb-profile-kernel.pdf 10.1142/S021972000500120X 16108083
-
(2005)
J Bioinform Comput Biol
, vol.3
, Issue.3
, pp. 527-550
-
-
Kuang, R.1
Ie, E.2
Wang, K.3
Wang, K.4
Siddiqi, M.5
Freund, Y.6
Leslie, C.7
-
8
-
-
25144481906
-
Semi-supervised protein classification using cluster kernels
-
Weston J Leslie C Ie E Zhou D Elisseeff A Noble WS Semi-supervised protein classification using cluster kernels Bioinformatics 2005, 21(15):3241-3247 http://bioinformatics.oxfordjournals.org/cgi/content/ abstract/21/15/3241 10.1093/bioinformatics/bti49715905279
-
(2005)
Bioinformatics
, vol.21
, Issue.15
, pp. 3241-3247
-
-
Weston, J.1
Leslie, C.2
Ie, E.3
Zhou, D.4
Elisseeff, A.5
Noble, W.S.6
-
9
-
-
84883575579
-
Fast String Kernels using Inexact Matching for Protein Sequences
-
Leslie C Kuang R Fast String Kernels using Inexact Matching for Protein Sequences J Mach Learn Res 2004, 5-1435-1455. http://jmlr.csail.mit.edu/ papers/volume5/leslie04a/leslie04a.pdf
-
(2004)
J Mach Learn Res
, vol.5
, pp. 1435-1455
-
-
Leslie, C.1
Kuang, R.2
-
11
-
-
0023375315
-
Profile analysis: Detection of distantly related proteins
-
305087 3474607 10.1073/pnas.84.13.4355
-
Gribskov M McLachlan A Eisenberg D Profile analysis: Detection of distantly related proteins PNAS 1987, 84:4355-4358. 305087 3474607 10.1073/pnas.84.13.4355
-
(1987)
PNAS
, vol.84
, pp. 4355-4358
-
-
Gribskov, M.1
McLachlan, A.2
Eisenberg, D.3
-
15
-
-
0030801002
-
Gapped Blast and PSI-Blast: A New Generation of Protein Database Search Programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul S Gapped Blast and PSI-Blast: A New Generation of Protein Database Search Programs NAR 1997, 25:3389-3402. 146917 9254694 10.1093/ nar/25.17.3389
-
(1997)
NAR
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
-
16
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
http://cd-hit.org 10.1093/bioinformatics/btl158 16731699
-
Li W Godzik A Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences Bioinformatics 2006, 22(13):1658-1659. http://cd-hit.org 10.1093/bioinformatics/btl158 16731699
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
18
-
-
0033954256
-
The Protein Data Bank
-
102472 10592235 10.1093/nar/28.1.235
-
Berman HM Westbrook J Feng Z Gilliland G Bhat T Weissig H Shindyalov IN Bourne PE The Protein Data Bank Nucleic Acids Research 2000, 28:235-242. 102472 10592235 10.1093/nar/28.1.235
-
(2000)
Nucleic Acids Research
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
19
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
165542 12520024 10.1093/nar/gkg095
-
Boeckmann B Bairoch A Apweiler R Blatter M Estreicher A Gasteiger E Martin M Michoud K O'Donovan C Phan I Pilbout S Schneider M The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 Nucleic Acids Res 2003, 31:365-370. 165542 12520024 10.1093/nar/gkg095
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
20
-
-
84888297747
-
-
http://www.kyb.tuebingen.mpg.de/bs/people/spider
-
-
-
-
21
-
-
85162009632
-
Scalable Algorithms for String Kernels with Inexact Matching
-
Kuksa P Huang PH Pavlovic V Scalable Algorithms for String Kernels with Inexact Matching NIPS 2008.
-
(2008)
NIPS
-
-
Kuksa, P.1
Huang, P.H.2
Pavlovic, V.3
-
22
-
-
0001969211
-
Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching
-
10.1016/S0097-8485(96)80004-0 16718863
-
Gribskov M Robinson NL Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching Computers & Chemistry 1996, 20:25-33. 10.1016/S0097-8485(96)80004-0 16718863
-
(1996)
Computers & Chemistry
, vol.20
, pp. 25-33
-
-
Gribskov, M.1
Robinson, N.L.2
-
23
-
-
84888286652
-
-
http://seqam.rutgers.edu/projects/bioinfo/region-semiprot
-
-
-
|