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Volumn 5, Issue , 2004, Pages 1435-1455

Fast string kernels using inexact matching for protein sequences

Author keywords

Computational biology; Kernel methods; String kernels

Indexed keywords

BENCHMARKING; BIOINFORMATICS; HIDDEN MARKOV MODELS; MARKOV PROCESSES; PROTEINS; SUPPORT VECTOR MACHINES;

EID: 84883575579     PISSN: 15324435     EISSN: 15337928     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (147)

References (29)
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  • 8
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    • Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
    • M. Gribskov and N. L. Robinson. Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Computers and Chemistry, 20(1):25-33, 1996.
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    • Gribskov, M.1    Robinson, N.L.2
  • 10
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    • Henikoff, S.1    Henikoff, J.G.2
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    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • A. G. Murzin, S. E. Brenner, T. Hubbard, and C. Chothia. SCOP: A structural classification of proteins database for the investigation of sequences and structures. Journal of Molecular Biology, 247:536-540, 1995.
    • (1995) Journal of Molecular Biology , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 21
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    • Spelling approximate or repeated motifs using a suffix tree
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    • (1998) Lecture Notes in Computer Science , vol.1380 , pp. 111-127
    • Sagot, M.1
  • 22
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    • On comparing classifiers: Pitfalls to avoid and a recommended approach
    • S. L. Salzberg. On comparing classifiers: Pitfalls to avoid and a recommended approach. Data Mining and Knowledge Discovery, 1:371-328, 1997.
    • (1997) Data Mining and Knowledge Discovery , vol.1 , pp. 371-328
    • Salzberg, S.L.1
  • 23
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    • Matrices for detecing distant relationships
    • Silver Spring, MD, National Biomedical Research Foundation
    • R. M. Schwartz and M. O. Dayhoff. Matrices for detecing distant relationships. In Atlas of Protein Sequence and Structure, pages 353-358, Silver Spring, MD, 1978. National Biomedical Research Foundation.
    • (1978) Atlas of Protein Sequence and Structure , pp. 353-358
    • Schwartz, R.M.1    Dayhoff, M.O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.