Genetic control of cellular quiescence in S. pombe

Journal of Cell Science

Volumn 122, Issue 9, 2009, Pages 1418-1429

  Sajiki, Kenichi ^a,b   Hatanaka, Mitsuko ^a,c   Nakamura, Takahiro ^c   Takeda, Kojiro ^a   Shimanuki, Mizuki ^a   Yoshida, Tomoko ^a   Hanyu, Yuichiro ^c   Hayashi, Takeshi ^a   Nakaseko, Yukinobu ^c   Yanagida, Mitsuhiro ^a,b,c  

^a OKINAWA INSTITUTE OF SCIENCE AND TECHNOLOGY GRADUATE UNIVERSITY   (Japan)

^b NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^c KYOTO UNIVERSITY   (Japan)

Author keywords

Cell cycle control; Cortex actin; Protein phosphatase; Protein trafficking; RNA polymerase II

Indexed keywords

ACTIN; ADENOSINE TRIPHOSPHATE; CELL CYCLE PROTEIN; HEAT SHOCK PROTEIN; LIPID; PHOSPHOPROTEIN PHOSPHATASE; PROTEIN FCP1; PROTEIN KINASE; RNA POLYMERASE II; UNCLASSIFIED DRUG;

ARTICLE; BIOGENESIS; CELL DIFFERENTIATION; CELL FUNCTION; CELL FUSION; CELL MATURATION; CELL MEMBRANE; CELL NUCLEUS; CELL PROLIFERATION; CELL VACUOLE; CELL WALL; CHROMATIN STRUCTURE; CONTROLLED STUDY; CYTOPLASM; ENDOSOME; FUNGAL CELL CULTURE; GENETIC CODE; GENETIC IDENTIFICATION; LIPOGENESIS; NONHUMAN; OSMOSIS; PRIORITY JOURNAL; PROTEIN TRANSPORT; RIBOSOME; RNA SPLICING; RNA TRANSCRIPTION; SCHIZOSACCHAROMYCES POMBE; SIGNAL TRANSDUCTION; TEMPERATURE SENSITIVE MUTANT; TRANSCRIPTION REGULATION;

ADENOSINE TRIPHOSPHATE; BIOLOGICAL MARKERS; CELL CYCLE; CELL DIVISION; CELL PROLIFERATION; CHROMATIN ASSEMBLY AND DISASSEMBLY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHOSPHOPROTEIN PHOSPHATASES; PROTEIN KINASES; RNA; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE PROTEINS; TEMPERATURE; VACUOLES;

SCHIZOSACCHAROMYCES POMBE; SCHIZOSACCHAROMYCETACEAE;

EID: 65449153736     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: 10.1242/jcs.046466     Document Type: Article

References (62)

1. Archambault, J., Chambers, R. S., Kobor, M. S., Ho, Y., Cartier, M., Bolotin, D., Andrews, B., Kane, C. M. and Greenblatt, J. (1997). An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 94, 14300-14305.
2. Armstrong, J., Craighead, M. W., Watson, R., Ponnambalam, S. and Bowden, S. (1993). Schizosaccharomyces pombe ypt5: A homologue of the rab5 endosome fusion regulator. Mol. Biol. Cell 4, 583-592.
3. Barlowe, C., Orei, L., Yeung, T., Hosobuchi, M., Hamamoto, S., Salama, N., Rexach, M. F., Ravazzola, M., Amherdt, M. and Schekman, R. (1994). COPII: A membrane coat formed by Sec proteins that drive vesicle budding from the endoplasmic reticulum. Cell 77, 895-907.
4. Castagnetti, S., Behrens, R. and Nurse, P. (2005). End4/Sla2 is involved in establishment of a new growth zone in Schizosaccharomyces pombe. J. Cell Sci. 118, 1843-1850.
5. Chikashige, Y., Tsutsumi, C., Yamane, M., Okamasa, K., Haraguchi, T. and Hirnoka, Y. (2006). Meiotic proteins bqt1 and bqt2 tether telomeres to form the bouquet arrangement of chromosomes. Cell 125, 59-69.
6. Clary, D. O., Griff, I. C. and Rothman, J. E. (1990). SNAPs, a family of NSF attachment proteins involved in intracellular membrane fusion in animals and yeast. Cell 61, 709-721.
7. Costello, G., Rogers, L. and Beach, D. (1986). Fission yeast enters the stationary phase G0 state from either mitotic G1 or G2. Curr. Genet. 11, 119-125.
8. Daga, R. R., Bolanos, P. and Moreno, S. (2003). Regulated mRNA stability of the Cdk inhibitor Rum1 links nutrient status to cell cycle progression. Curr. Biol. 13, 2015-2024.
9. Davidson, M. K., Shandilya, H. K., Hirota, K., Ohta, K. and Wahls, W. P. (2004). Atf1-Pcr1-M26 complex links stress-activated MAPK and cAMP-dependent protein kinase pathways via chromatin remodeling of cgs2+. J. Biol. Chem. 279, 50857-50863.
10. Dorsett, D. (2007). Roles of the sister chromatid cohesion apparatus in gene expression, development, and human syndromes. Chromosoma 116, 1-13.
11. Dorsett, D., Eissenberg, J. C., Misulovin, Z., Martens, A., Redding, B. and McKim, K. (2005). Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila. Development 132, 4743-4753.
12. Engqvist-Goldstein, A. E., Kessels, M. M., Chopra, V. S., Hayden, M. R. and Drubin, D. G. (1999). An actin-binding protein of the Sla2/ Huntingtin interacting protein 1 family is a novel component of clathrin-coated pits and vesicles. J. Cell Biol. 147, 1503-1518.
13. Gachet, Y., Codlin, S., Hyams, J. S. and Mole, S. E. (2005). btn1, the Schizosaccharomyces pombe homologue of the human Batten disease gene CLN3, regulates vacuole homeostasis. J. Cell Sci. 118, 5525-5536.
14. Giannakouros, T., Newman, C. M., Craighead, M. W., Armstrong, J. and Magee, A. I. (1993). Post-translational processing of Schizosaccharomyces pombe YPT5 protein. In vitro and in vivo analysis of processing mutants. J. Biol. Chem. 268, 24467-24474.
15. Hanyu, Y., Imai, K., Kawasaki, Y., Nakamura, T., Nakaseko, Y., Nagao, K., Kokubu, A., Ebe, M., Fujisawa, A., Hayashi, T., Obuse, C. and Yanagida, K. (2009). Schizosaccharomyces pombe cell division cycle under limited glucose requires Ssp1 kinase, the putative CaMKK, and Sds23, a PP2A-related phosphatase inhibitor. Genes Cells (in press).
16. Harigaya, Y., Tanaka, H., Yamanaka, S., Tanaka, K., Watanabe, Y., Tsutsumi, C., Chikashige, Y., Hiraoka, Y., Yamashita, A. and Yamamoto, M. (2006). Selective elimination of messenger RNA prevents an incidence of untimely meiosis. Nature 442, 45-50.
17. Hausmann, S. and Shuman, S. (2003). Defining the active site of Schizosaccharomyces pombe C-terminal domain phosphatase Fcp1. J. Biol. Chem. 278, 13627-13632.
18. Hausmann, S., Erdjument-Bromage, H. and Shuman, S. (2004). Schizosaccharomyces pombe carboxyl-terminal domain (CTD) phosphatase Fcp1: Distributive mechanism, minimal CTD substrate, and active site mapping. J. Biol. Chem. 279, 10892-10900.
19. Hayashi, T., Fujita, Y., Iwasaki, O., Adachi, Y., Takahashi, K. and Yanagida, M. (2004). Mis16 and Mis18 are required for CENP-A loading and histone deacetylation at centromeres. Cell 118, 715-729.
20. Higgs, H. N. and Pollard, T. D. (2001). Regulation of actin filament network formation through ARP2/3 complex: Activation by a diverse array of proteins. Annu. Rev. Biochem. 70, 649-676.
21. Inoue, H. and Shimoda, C. (1981). Induction of trehalase activity on a nitrogen-free medium: A sporulation-specific event in the fission yeast, Schizosaccharomyces pombe. Mol. Gen. Genet. 183, 32-36.
22. Iwaki, T., Tanaka, N., Takagi, H., Giga-Hama, Y. and Takegawa, K. (2004). Characterization of end4+, a gene required for endocytosis in Schizosaccharomyces pombe. Yeast 21, 867-881.
23. Kaksonen, M., Sun, Y. and Drubin, D. G. (2003). A pathway for association of receptors, adaptors, and actin during endocytic internalization. Cell 115, 475-487.
24. Kalchman, M. A., Koide, H. B., McCutcheon, K., Graham, R. K., Nichol, K., Nishiyama, K., Kazemi-Esfarjani, P., Lynn, F. C., Wellington, C., Metzler, M. et al. (1997). HIP1, a human homologue of S. cerevisiae Sla2p, interacts with membrane-associated huntingtin in the brain. Nat. Genet. 16, 44-53.
25. Kay, B. K., Yamabhai, M., Wendland, B. and Emr, S. D. (1999). Identification of a novel domain shared by putative components of the endocytic and cytoskeletal machinery. Protein Sci. 8, 435-438.
26. Kinchen, J. M., Doukoumetzidis, K., Almendinger, J., Stergiou, L., Tosello-Trampont, A., Sifri, C. D., Hengartner, M. O. and Ravichandran, K. S. (2008). A pathway for phagosome maturation during engulfment of apoptotic cells. Nat. Cell Biol. 10, 556-566.
27. Labib, K. and Moreno, S. (1996). rum1: A CDK inhibitor regulating G1 progression in fission yeast. Trends Cell Biol. 6, 62-66.
28. Le Borgne, R. and Hoflack, B. (1998). Mechanisms of protein sorting and coat assembly: Insights from the clathrin-coated vesicle pathway. Curr. Opin. Cell Biol. 10, 499-503.
29. Lee, W. L., Bezanilla, M. and Pollard, T. D. (2000). Fission yeast myosin-I, Myo1p, stimulates actin assembly by Arp2/3 complex ahd shares functions with WASp. J. Cell Biol. 151, 789-800.
30. Luo, W., Johnson, A. W. and Bentley, D. L. (2006). The role of Rat1 in coupling mRNA 3′-end processing to transcription termination: Implications for a unified allosteric-torpedo model. Genes Dev. 20, 954-965.
31. Lyne, R., Burns, G., Mata, J., Penkett, C. J., Rustici, G., Chen, D., Langford, C., Vetrie, D. and Bahler, J. (2003). Whole-genome microarrays of fission yeast: Characteristics, accuracy, reproducibility, and processing of array data. BMC Genomics 4 27.
32. Matsusaka, T., Hirata, D., Yanagida, M. and Toda, T. (1995). A novel protein kinase gene ssp1+ is required for alteration of growth polarity and actin localization in fission yeast. EMBO J. 14 3325-3338.
33. Millar, J. B., Buck, V. and Wilkinson, M. G. (1995). Pyp1 and Pyp2 PTPases dephosphorylate an osmosensing MAP kinase controlling cell size at division in fission yeast. Genes Dev. 9, 2117-2130.
34. Mitchison, J. M. (1970). Physiological and cytological methods for Schizosaccharomyces pombe. Methods Cell Physiol. 4, 131-165.
35. Mochida, S. and Yanagida, M. (2006). Distinct modes of DNA damage response in S. pombe G0 and vegetative cells. Genes Cells 11, 13-27.
36. Moreno, S. and Nurse, P. (1994). Regulation of progression through the G1 phase of the cell cycle by the rum1+ gene. Nature 367 236-242.
37. Neumann, F. R. and Nurse, P. (2007). Nuclear size control in fission yeast. J. Cell Biol. 179, 593-600.
38. Newman, C. M., Glannakouros, T., Hancock, J. F., Fawell, E. H., Armstrong, J. and Magee, A. I. (1992). Post-translation processing of Schizosaccharomyces pombe YPT proteins. J. Biol. Chem. 267, 11329-11336.
39. Notarangelo, L., D. Notarangelo, L. D. and Ochs, H. D. (2005). WASP and the phenotypic range associated with deficiency. Curr. Opin. Allergy Clin. Immunol. 5, 485-490.
40. Nurse, P. (1990). Universal control mechanism regulating onset of M-phase. Nature 344, 503-508.
41. Petersen, J. and Nurse, P. (2007). TOR signalling regulates mitotic commitment through the stress MAP kinase pathway and the Polo and Cdc2 kinases. Nat. Cell Biol. 9, 1263-1272.
42. Price, A., Wickner, W. and Ungermann, C. (2000). Proteins needed for vesicle budding from the Golgi complex are also required for the docking step of homotypic vacuole fusion. J. Cell Biol. 148, 1223-1229.
43. Rieder, S. E. and Emr, S. D. (1997). A novel RING finger protein complex essential for a late step in protein transport to the yeast vacuole. Mol. Biol. Cell 8, 2307-2327.
44. Rupes, I, Jia, Z. and Young, P. G. (1999). Ssp1 promotes actin depolymerization and is involved in stress response and new end take-off control in fission yeast. Mol. Biol. Cell 10, 1495-1510.
45. Ruatici, G., Mata, J., Kivinen, K., Lio, P., Penkett, C. J., Burns, G., Hayles, J., Brazma, A., Nurse, P. and Babler, J. (2004). Periodic gene expression program of the fission yeast cell cycle. Nat. Genet. 36, 809-817.
46. Schafer, B. (2003). Genetic conservation versus variability in mitochondria: Die architecture of the mitochondrial genomic in the petite-negative yeast Schizosaccharomyccs pombe. Curr. Genet. 43, 311-326.
47. Shimanuki, M., Chung, S. Y., Chikashige, Y., Kawasaki, Y., Uchara, L., Tsutsumi, C., Hatanaka, M., Hirstoka, Y., Nagao, K. and Yanagida, M. (2007). Two-step, extensive alterations in the transcriptome from G0 arrest to cell division in Schizosaccharomyces pombe. Genes Cells 12, 677-692.
48. Shiozaki, K. and Russell, P. (1995). Cell-cycle control linked to extracellular environment by MAP kinase pathway in fission yeast. Nature 378, 739-743.
49. Shiozaki, K. and Russell, P. (1996). Conjugation, meiosis, and the osmotic stress response are regulated by Spc1 kinase through Atf1 transcription factor in fission yeast. Genes Dev. 10, 2276-2288.
50. Shobuike, T., Tatebayashi, K., Tani, T., Sugano, S. and Ikeda, H. (2001). The dhp1(+) gene, encoding a putative nuclear 5′→3′ exoribonuclease, is required for proper chromosome segregation in fission yeast. Nucleic Acids Res. 29, 1326-1333.
51. Sirotkin, V., Beltzmer, C. C., Marchand, J. B. and Pollard, T. D. (2005). Interactions of WASp, myosin-I, and verprolin with Arp2/3 complex during actin patch assembly in fission yeast. J. Cell Biol. 170, 637-648.
52. Starai, V. J., Hickey, C. M. and Wickner, W. (2008). HOPS Proofreads the trans-SNARE Complex for Yeast Vacuole Fusion. Mol. Biol. Cell 19, 2500-2508.
53. So, S. S., Tanaka, Y, Samejima, I., Tanaka, K. and Yanagida, M. (1996). A nitrogen starvation-induced dormant G0 state in fission yeast: the establishment from uncommitted G1 state and its delay for return to proliferation. J. Cell Sci. 100, 1347-1357.
54. Takeda, T., Toda, T., Kominami, K., Kohnosu, A., Yanagida, M. and Jones, N. (1993). Schizosaccharomyces pombe atf1+ encodes a transcription factor required for sexual development and entry into stationary phase. EMBO J. 14, 6193-6208.
55. Vida, T. A. and Emr, S. D. (1995). A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J. Cell Biol. 128, 779-792.
56. Volpe, T. A., Kidner, C., Hall, I. M., Teng, G., Grewal, S. I. and Martienssen, R. A. (2002). Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837.
57. Wang, S. and Fischer, P. M. (2008). Cyclin-dependent kinase 9, a key transcriptional regulator and potential drug target in oncology, virology and cardiology. Trends Pharmacol. Sci. 29, 302-313.
58. Warbrick, E. and Fantes, P. A. (1991). The wis1 protein kinase is a dosage-dependent regulator of mitosis in Schizosaccharomyces pombe. EMBO J. 10, 4291-4299.
59. Wieland, T. (1986). Phallotoxins. Now York: Springer-Verlag.
60. Wiemken, A. (1990). Trehalose in yeast, stress protectant rather than reserve carbohydrate. Antonie Van Leeuwenhoek 58, 209-217.
61. Wurmser, A. E., Sato, T. K. and Emr, S. D. (2000). New component of the vacuolar class C-Vps.complex couples nucleotide exchange on the YpL7 GTPase to SNAREdependent docking and fusion. J. Cell Biol. 151, 551-562.
62. Yanagida, M. (2005). Basic mechanism of eukaryotic chromosome segregation. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360, 609-621.