DNA unhooking from a single post as a deterministic process: Insights from translocation modeling

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 79, Issue 3, 2009, Pages

  Laachi, Nabil ^a   Cho, Jaeseol ^a   Dorfman, Kevin D ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APPLIED ELECTRIC FIELDS; BROWNIAN DYNAMICS SIMULATIONS; CONTINUOUS-TIME RANDOM WALKS; DETERMINISTIC PROCESS; DNA CHAINS; DNA TRANSLOCATIONS; FIELD PARAMETERS; SECOND MOMENTS; STOCHASTIC METHODS; TRANSPORT PROCESS;

BROWNIAN MOVEMENT; DNA; ELECTRIC FIELDS; GENES; NUCLEIC ACIDS; PROBABILITY DISTRIBUTIONS;

METHOD OF MOMENTS;

EID: 65449153264     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.79.031928     Document Type: Article

References (39)

1. J. L. Viovy, Rev. Mod. Phys. 72, 813 (2000). 10.1103/RevModPhys.72.813
2. C. Heller, T. A. J. Duke, and J. L. Viovy, Biopolymers 34, 249 (1994). 10.1002/bip.360340211
3. D. C. Schwartz and C. R. Cantor, Cell 37, 67 (1984). 10.1016/0092- 8674(84)90301-5
4. G. W. Slater, S. Guillouzic, M. G. Gauthier, J. F. Mercier, M. Kenward, L. C. McCormick, and F. Tessier, Electrophoresis 23, 3791 (2002). 10.1002/elps.200290002
5. T. M. Squires and S. R. Quake, Rev. Mod. Phys. 77, 977 (2005). 10.1103/RevModPhys.77.977
6. R. B. Schoch, J. Han, and P. Renaud, Rev. Mod. Phys. 80, 839 (2008). 10.1103/RevModPhys.80.839
7. W. D. Volkmuth and R. H. Austin, Nature (London) 358, 600 (1992). 10.1038/358600a0
8. N. Kaji, Y. Tezuka, Y. Takamura, M. Ueda, T. Nishimoto, H. Nakanishi, Y. Horiike, and Y. Baba, Anal. Chem. 76, 15 (2004). 10.1021/ac030303m
9. P. S. Doyle, J. Bibette, A. Bancaud, and J. L. Viovy, Science 295, 2237 (2002). 10.1126/science.1068420
10. N. Minc, C. Fütterer, K. D. Dorfman, A. Bancaud, C. Gosse, C. Goubault, and J. L. Viovy, Anal. Chem. 76, 3770 (2004). 10.1021/ac035246b
11. W. D. Volkmuth, T. A. J. Duke, M. C. Wu, R. H. Austin, and A. Szabo, Phys. Rev. Lett. 72, 2117 (1994). 10.1103/PhysRevLett.72.2117
12. G. I. Nixon and G. W. Slater, Phys. Rev. E 50, 5033 (1994). 10.1103/PhysRevE.50.5033
13. N. Minc, J. L. Viovy, and K. D. Dorfman, Phys. Rev. Lett. 94, 198105 (2005). 10.1103/PhysRevLett.94.198105
14. G. C. Randall and P. S. Doyle, Macromolecules 38, 2410 (2005). 10.1021/ma048073g
15. M. Kenward and G. W. Slater, Eur. Phys. J. E 20, 125 (2006). 10.1140/epje/i2006-10008-2
16. E. M. Sevick and D. R. M. Williams, Eur. Phys. Lett. 56, 529 (2001). 10.1209/epl/i2001-00553-2
17. J. M. Deutsch, Science 240, 922 (1988). 10.1126/science.3363374
18. J. M. Deutsch and T. L. Madden, J. Chem. Phys. 90, 2476 (1989). 10.1063/1.455990
19. J. M. Deutsch, J. Chem. Phys. 90, 7436 (1989). 10.1063/1.456223
20. S. Popelka, Z. Kabatek, J. L. Viovy, and B. Gas, J. Chromatogr. A 838, 45 (1999). 10.1016/S0021-9673(99)00165-X
21. K. D. Dorfman, Phys. Rev. E 73, 061922 (2006). 10.1103/PhysRevE.73.061922
22. K. D. Dorfman, Phys. Rev. E 77, 019901 (E) (2008). 10.1103/PhysRevE.77. 019901
23. A. Mohan and P. S. Doyle, Macromolecules 40, 8794 (2007). 10.1021/ma071354e
24. W. Sung and P. J. Park, Phys. Rev. Lett. 77, 783 (1996). 10.1103/PhysRevLett.77.783
25. M. Muthukumar, J. Chem. Phys. 111, 10371 (1999). 10.1063/1.480386
26. O. Flomenbom and J. Klafter, Phys. Rev. E 68, 041910 (2003). 10.1103/PhysRevE.68.041910
27. M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 065103 (2008). 10.1063/1.2826339
28. J. M. Schurr and S. B. Smith, Biopolymers 29, 1161 (1990). 10.1002/bip.360290806
29. P. André, D. Long, and A. Ajdari, Eur. Phys. J. B 4, 307 (1998). 10.1007/s100510050384
30. A. Szabo, K. Schulten, and Z. Schulten, J. Chem. Phys. 72, 4350 (1980). 10.1063/1.439715
31. M. G. Gauthier and G. W. Slater, Phys. Rev. E 70, 015103 (R) (2004). 10.1103/PhysRevE.70.015103
32. G. W. Slater, Electrophoresis 14, 1 (1993). 10.1002/elps.1150140102
33. R. M. Mnatsakanov, Stat. Probab. Lett. 78, 1869 (2008). 10.1016/j.spl.2008.01.054
34. J. M. Kim and P. S. Doyle, J. Chem. Phys. 125, 074906 (2006). 10.1063/1.2222374
35. G. C. Randall and P. S. Doyle, Phys. Rev. Lett. 93, 058102 (2004). 10.1103/PhysRevLett.93.058102
36. R. M. Jendrejack, J. J. de Pablo, and M. D. Graham, J. Chem. Phys. 116, 7752 (2002). 10.1063/1.1466831
37. J. F. Marko and E. D. Siggia, Macromolecules 28, 8759 (1995). 10.1021/ma00130a008
38. P. T. Underhill and P. S. Doyle, J. Non-Newtonian Fluid Mech. 122, 3 (2004). 10.1016/j.jnnfm.2003.10.006
39. D. M. Heyes and J. R. Melrose, J. Non-Newtonian Fluid Mech. 46, 1 (1993). 10.1016/0377-0257(93)80001-R