메뉴 건너뛰기




Volumn 25, Issue 9, 2009, Pages 1192-1194

WSsas: A web service for the annotation of functional residues through structural homologues

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CATALYSIS; COMPUTER PROGRAM; INFORMATION RETRIEVAL; PRIORITY JOURNAL; PROCESS DESIGN; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SEQUENCE ALIGNMENT;

EID: 65449148627     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp116     Document Type: Article
Times cited : (16)

References (21)
  • 1
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
    • (2000) Nucleic Acids Res , vol.28 , pp. 235-242
    • Berman, H.M.1
  • 2
    • 33747839468 scopus 로고    scopus 로고
    • ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    • de Castro,E. et al. (2006) ScanProsite: Detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins, Nucleic Acids Res., 34, W362-W365.
    • (2006) Nucleic Acids Res , vol.34
    • de Castro, E.1
  • 4
    • 38549176691 scopus 로고    scopus 로고
    • Flicek,P. et al. (2008) Ensembl 2008. Nucleic Acids Res., 36, D707-D714.
    • Flicek,P. et al. (2008) Ensembl 2008. Nucleic Acids Res., 36, D707-D714.
  • 5
    • 48549093368 scopus 로고    scopus 로고
    • MSDmotif: Exploring protein sites and motifs
    • Golovin,A. and Henrick,K. (2008) MSDmotif: Exploring protein sites and motifs. BMC Bioinformatics, 9, 312.
    • (2008) BMC Bioinformatics , vol.9 , pp. 312
    • Golovin, A.1    Henrick, K.2
  • 6
    • 33846120419 scopus 로고    scopus 로고
    • MACiE (Mechanism, Annotation and Classification in Enzymes): Novel tools for searching catalytic mechanisms
    • Holliday,G.L. et al. (2007) MACiE (Mechanism, Annotation and Classification in Enzymes): Novel tools for searching catalytic mechanisms. Nucleic Acids Res., 35, D515-D520.
    • (2007) Nucleic Acids Res , vol.35
    • Holliday, G.L.1
  • 7
    • 42449116643 scopus 로고    scopus 로고
    • Software for rapid prototyping in the pharmaceutical and biotechnology industries
    • Kappler,M.A. (2008) Software for rapid prototyping in the pharmaceutical and biotechnology industries, Curr. Opin. Drug Discov. Dev., 11 389-392.
    • (2008) Curr. Opin. Drug Discov. Dev , vol.11 , pp. 389-392
    • Kappler, M.A.1
  • 8
    • 34547579706 scopus 로고    scopus 로고
    • Web services at the European Bioinformatics Institute
    • Labarga,A. et al. (2007) Web services at the European Bioinformatics Institute. Nucleic Acids Res., 35, W6-W11.
    • (2007) Nucleic Acids Res , vol.35
    • Labarga, A.1
  • 9
    • 0000243829 scopus 로고
    • Procheck - a program to check the stereochemical quality of protein structures
    • Laskowski,R.A. et al. (1993) Procheck - a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26, 283-291.
    • (1993) J. Appl. Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1
  • 10
    • 13444254300 scopus 로고    scopus 로고
    • PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids
    • Laskowski,R.A. et al. (2005a) PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res., 33, D266-D268.
    • (2005) Nucleic Acids Res , vol.33
    • Laskowski, R.A.1
  • 11
    • 22544441094 scopus 로고    scopus 로고
    • ProFunc: A server for predicting protein function from 3D structure
    • Laskowski,R.A. et al. (2005b) ProFunc: A server for predicting protein function from 3D structure. Nucleic Acids Res., 33, W89-W93.
    • (2005) Nucleic Acids Res , vol.33
    • Laskowski, R.A.1
  • 12
    • 0031574026 scopus 로고    scopus 로고
    • NUCPLOT: A program to generate schematic diagrams of protein-nucleic acid interactions
    • Luscombe,N.M. et al. (1997) NUCPLOT: A program to generate schematic diagrams of protein-nucleic acid interactions. Nucleic Acids Res., 25, 4940-4945.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4940-4945
    • Luscombe, N.M.1
  • 13
    • 0031762430 scopus 로고    scopus 로고
    • Sequences annotated by structure: A tool to facilitate the use of structural information in sequence analysis
    • Milburn,D. et al. (1998) Sequences annotated by structure: A tool to facilitate the use of structural information in sequence analysis. Protein Eng., 11, 855-859.
    • (1998) Protein Eng , vol.11 , pp. 855-859
    • Milburn, D.1
  • 14
    • 33846116032 scopus 로고    scopus 로고
    • New developments in the InterPro database
    • Mulder,N.J. et al. (2007) New developments in the InterPro database. Nucleic Acids Res., 35, D224-D228.
    • (2007) Nucleic Acids Res , vol.35
    • Mulder, N.J.1
  • 15
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Nal Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Nal Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 16
    • 0345864027 scopus 로고    scopus 로고
    • The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data
    • Porter,C.T. et al. (2004) The Catalytic Site Atlas: A resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res., 32, D129-D133.
    • (2004) Nucleic Acids Res , vol.32
    • Porter, C.T.1
  • 17
    • 58149161724 scopus 로고    scopus 로고
    • Genome and proteome annotation: Organization, interpretation and integration
    • Reeves,G.A. et al. (2009) Genome and proteome annotation: organization, interpretation and integration. J. R. Soc. Interface 6, 129-147.
    • (2009) J. R. Soc. Interface , vol.6 , pp. 129-147
    • Reeves, G.A.1
  • 18
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 19
    • 38549097071 scopus 로고    scopus 로고
    • The universal protein resource (UniProt)
    • UniProt Consortium
    • UniProt Consortium. (2008) The universal protein resource (UniProt). Nucleic Acids Res., 36, D190-D195.
    • (2008) Nucleic Acids Res , vol.36
  • 20
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace,A.C. et al. (1995) LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng., 8, 127-134.
    • (1995) Protein Eng , vol.8 , pp. 127-134
    • Wallace, A.C.1
  • 21
    • 38549107541 scopus 로고    scopus 로고
    • Gene3D: Comprehensive structural and functional annotation of genomes
    • Yeats,C. et al. (2008) Gene3D: Comprehensive structural and functional annotation of genomes. Nucleic Acids Res., 36, D414-D418.
    • (2008) Nucleic Acids Res , vol.36
    • Yeats, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.