메뉴 건너뛰기




Volumn 12, Issue 3, 2008, Pages 297-306

An evolutionary algorithm to find associations in dense genetic maps

Author keywords

Association studies; Evolutionary algorithm (EA); Linkage disequilibrium (LD); Logic trees; Single nucleotide polymorphism (SNP) data

Indexed keywords

ASSOCIATION STUDIES; BAYESIAN REGRESSIONS; BOOLEAN EXPRESSIONS; CANDIDATE GENES; CONSTRUCT MODELS; FITNESS FUNCTIONS; GENETIC BASIS; GENETIC MAPS; GENETIC MARKERS; GENETIC VARIATIONS; HUMAN DISEASE; LINKAGE DISEQUILIBRIUM (LD); LOGIC TREES; MARGINAL LIKELIHOODS; MODEL SPACES; SINGLE-NUCLEOTIDE POLYMORPHISM (SNP) DATA;

EID: 65349117228     PISSN: 1089778X     EISSN: None     Source Type: Journal    
DOI: 10.1109/TEVC.2007.900984     Document Type: Article
Times cited : (6)

References (35)
  • 2
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium, "A haplotype map of the human genome," Nature, vol. 437, pp. 1299-1320, 2005.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 3
    • 33646187604 scopus 로고    scopus 로고
    • The impact of low-cost, genome-wide resequencing on association studies
    • D. J. Balding, "The impact of low-cost, genome-wide resequencing on association studies," Human Genomics, vol. 2, pp. 78-81, 2005.
    • (2005) Human Genomics , vol.2 , pp. 78-81
    • Balding, D.J.1
  • 4
    • 0345407833 scopus 로고    scopus 로고
    • An introduction to evolutionary computation for biologists
    • G. B. Fogel and D. W. Corne, Eds. San Francisco, CA: Morgan Kaufmann
    • G. B. Fogel and D. W. Corne, "An introduction to evolutionary computation for biologists," in Evolutionary Computation in Bioinformatics, G. B. Fogel and D. W. Corne, Eds. San Francisco, CA: Morgan Kaufmann, 2003, pp. 19-38.
    • (2003) Evolutionary Computation in Bioinformatics , pp. 19-38
    • Fogel, G.B.1    Corne, D.W.2
  • 7
    • 26944491706 scopus 로고    scopus 로고
    • Lymphoma cancer classification using genetic programming with SNR features
    • Proc. 7th Eur. Conf. EuroGP 2004, M. Keijzer, U. M. O'Reilly, S. M. Lucas, E. Costa, and T. Soule, Eds, Coimbra, Portugal, Apr. 5-7
    • H. Jin-Hyuk and C. Sung-Bae, "Lymphoma cancer classification using genetic programming with SNR features," in Proc. 7th Eur. Conf. EuroGP 2004, M. Keijzer, U. M. O'Reilly, S. M. Lucas, E. Costa, and T. Soule, Eds., Coimbra, Portugal, Apr. 5-7, 2004, vol. 3003, ser. Lecture Notes in Computer Science, pp. 78-66.
    • (2004) ser. Lecture Notes in Computer Science , vol.3003 , pp. 78-66
    • Jin-Hyuk, H.1    Sung-Bae, C.2
  • 8
    • 2942519521 scopus 로고    scopus 로고
    • Evolutionary algorithms for the selection of single nucleotide polymorphisms
    • R. M. Hubley, E. Zitzler, and J. C. Roach, "Evolutionary algorithms for the selection of single nucleotide polymorphisms," BMC Bioinformatics, vol. 4, p. 30, 2003.
    • (2003) BMC Bioinformatics , vol.4 , pp. 30
    • Hubley, R.M.1    Zitzler, E.2    Roach, J.C.3
  • 9
    • 3042708824 scopus 로고    scopus 로고
    • Genetic programming outperformed multivariable logistic regression in diagnosing pulmonary embolism
    • C. J. Biesheuvel, I. Siccama, D. E. Grobbee, and K. G. Moons, "Genetic programming outperformed multivariable logistic regression in diagnosing pulmonary embolism," J. Clin. Epidemiol., vol. 57, pp. 551-60, 2004.
    • (2004) J. Clin. Epidemiol , vol.57 , pp. 551-560
    • Biesheuvel, C.J.1    Siccama, I.2    Grobbee, D.E.3    Moons, K.G.4
  • 10
    • 0035415174 scopus 로고    scopus 로고
    • Grammatical evolution
    • Aug
    • M. O'Neil and C. Ryan, "Grammatical evolution," IEEE Trans. Evol. Comput., vol. 5, no. 4, pp. 349-58, Aug. 2001.
    • (2001) IEEE Trans. Evol. Comput , vol.5 , Issue.4 , pp. 349-358
    • O'Neil, M.1    Ryan, C.2
  • 12
    • 35048898367 scopus 로고    scopus 로고
    • Grammatical swarm
    • Proc. Genetic Evol. Comput. Conf, K. Deb, R. Poli, W. Banzhaf, H. Beyer, E. Burke, P. Darwen, D. Dasgupta, D. Horeano, J. Foster, M. Harman, O. Holland, P. Lanzi, L. Spector, A. Tettamanzi, D. Tbierens, and A. Tyrrell, Eds
    • M. O'Neil and A. Brabazon, "Grammatical swarm," in Proc. Genetic Evol. Comput. Conf., K. Deb, R. Poli, W. Banzhaf, H. Beyer, E. Burke, P. Darwen, D. Dasgupta, D. Horeano, J. Foster, M. Harman, O. Holland, P. Lanzi, L. Spector, A. Tettamanzi, D. Tbierens, and A. Tyrrell, Eds., 2004, vol. 3102, ser. Lecture Notes in Computer Science, pp. 163-74.
    • (2004) ser. Lecture Notes in Computer Science , vol.3102 , pp. 163-174
    • O'Neil, M.1    Brabazon, A.2
  • 13
    • 27144501073 scopus 로고    scopus 로고
    • A statistical comparison of grammatical evolution strategies in the domain of human genetics
    • F. Rothlauf, Ed, Washington, DC, Jun. 25-29, 2005, Online, Available
    • B. C. White, J. C. Gilbert, and J. H. Moore, "A statistical comparison of grammatical evolution strategies in the domain of human genetics," in Proc. Late Breaking Paper at Genetic Evol. Comput. Conf. (GECCO'2005), F. Rothlauf, Ed., Washington, DC, Jun. 25-29, 2005. [Online]. Available: http://www.cs.bham.ac.uk/wbl/biblio/ gecco20051bp/papers/83-white.pdf
    • Proc. Late Breaking Paper at Genetic Evol. Comput. Conf. (GECCO'2005)
    • White, B.C.1    Gilbert, J.C.2    Moore, J.H.3
  • 14
    • 0036842183 scopus 로고    scopus 로고
    • Genotype-phenotype mapping: Genes as computer programs
    • D. B. Kell, "Genotype-phenotype mapping: Genes as computer programs," Trends in Genetics, vol. 18, pp. 555-9, 2002.
    • (2002) Trends in Genetics , vol.18 , pp. 555-559
    • Kell, D.B.1
  • 15
    • 35048891558 scopus 로고    scopus 로고
    • Genetic programming neural networks as a bioinformatics tool for human genetics
    • Proc. Genetic and Evolutionary Computation, GECCO 2004, K. Deb, R. Poli, W. Banzhaf, H. Beyer, E. Burke, P. Darwen, D. Dasgupta, D. Floreano, J. Foster, M. Harman, O. Holland, P. L. Lanzi, L. Spector, A. Tettamanzi, D. Thierens, and A. Tyrrell, Eds
    • M. D. Ritchie, C. S. Coffey, and J. H. Moore, "Genetic programming neural networks as a bioinformatics tool for human genetics," in Proc. Genetic and Evolutionary Computation - GECCO 2004, K. Deb, R. Poli, W. Banzhaf, H. Beyer, E. Burke, P. Darwen, D. Dasgupta, D. Floreano, J. Foster, M. Harman, O. Holland, P. L. Lanzi, L. Spector, A. Tettamanzi, D. Thierens, and A. Tyrrell, Eds., 2004, ser. Lecture Notes in Computer Science, pp. 438-448.
    • (2004) ser. Lecture Notes in Computer Science , pp. 438-448
    • Ritchie, M.D.1    Coffey, C.S.2    Moore, J.H.3
  • 16
    • 0035014774 scopus 로고    scopus 로고
    • Detection of closely linked multiple quantitative trait loci using a genetic algorithm
    • R. Nakamichi, Y. Ukaia, and H. Kishinoa, "Detection of closely linked multiple quantitative trait loci using a genetic algorithm," Genetics, vol. 158, pp. 463-475, 2001.
    • (2001) Genetics , vol.158 , pp. 463-475
    • Nakamichi, R.1    Ukaia, Y.2    Kishinoa, H.3
  • 18
    • 3142555952 scopus 로고    scopus 로고
    • Q. Xu, Y. B. Jia, B. Y. Zhang, K. Zou, Y. B. Tao, Y. P. Wang, B. Q. Qiang, G. Y. Wu, Y. Shen, H. K. Ji, Y. Huang, X. Q. Sun, L. Ji, Y. D. Li, Y. B. Yuan, L. Shu, X. Yu, Y. C. Shen, Y. Q. Yu, G. Z. Ju, and C. S. Consortium, Association study of an snp combination pattern in the dopaminergic pathway in paranoid schizophrenia: A novel strategy for complex disorders, Mol. Psychiatry., 9, pp. 510-21, 2004.
    • Q. Xu, Y. B. Jia, B. Y. Zhang, K. Zou, Y. B. Tao, Y. P. Wang, B. Q. Qiang, G. Y. Wu, Y. Shen, H. K. Ji, Y. Huang, X. Q. Sun, L. Ji, Y. D. Li, Y. B. Yuan, L. Shu, X. Yu, Y. C. Shen, Y. Q. Yu, G. Z. Ju, and C. S. Consortium, "Association study of an snp combination pattern in the dopaminergic pathway in paranoid schizophrenia: A novel strategy for complex disorders," Mol. Psychiatry., vol. 9, pp. 510-21, 2004.
  • 19
    • 4344657641 scopus 로고    scopus 로고
    • Rules extraction in linkage disequilibrium mapping with an adaptive genetic algorithm
    • Paris, France
    • L. Jourdan, C. Dhaenens, and E.-G. Talbi, "Rules extraction in linkage disequilibrium mapping with an adaptive genetic algorithm," in Proc. Eur. Conf. Computat. Biol. (ECCB) 2003, Paris, France, 2003, pp. 29-32.
    • (2003) Proc. Eur. Conf. Computat. Biol. (ECCB) 2003 , pp. 29-32
    • Jourdan, L.1    Dhaenens, C.2    Talbi, E.-G.3
  • 20
    • 27544508518 scopus 로고    scopus 로고
    • Finding associations in dense genetic maps: A genetic algorithm approach
    • T. G. Clark, M. De Iorio, R. C. Griffiths, and M. Farrall, "Finding associations in dense genetic maps: A genetic algorithm approach," Human Heredity, vol. 60, pp. 97-108, 2005.
    • (2005) Human Heredity , vol.60 , pp. 97-108
    • Clark, T.G.1    De Iorio, M.2    Griffiths, R.C.3    Farrall, M.4
  • 22
    • 12744269194 scopus 로고    scopus 로고
    • Identifying interacting SNPs using monte Carlo logic regression
    • C. Kooperberg and I. Ruczinski, "Identifying interacting SNPs using monte Carlo logic regression," Genet. Epidemiol., vol. 28, pp. 157-70, 2005.
    • (2005) Genet. Epidemiol , vol.28 , pp. 157-170
    • Kooperberg, C.1    Ruczinski, I.2
  • 23
    • 0038449167 scopus 로고    scopus 로고
    • Evolutionary-based association analysis using haplotype data
    • H. Seltman, K. Roeder, and B. Devlin, "Evolutionary-based association analysis using haplotype data," Genet. Epidemiol., vol. 25, pp. 48-58, 2003.
    • (2003) Genet. Epidemiol , vol.25 , pp. 48-58
    • Seltman, H.1    Roeder, K.2    Devlin, B.3
  • 24
    • 33845511145 scopus 로고    scopus 로고
    • Bayesian logistic regression using a perfect phylogeny
    • T. G. Clark, M. De Iorio, and R. C. Griffiths, "Bayesian logistic regression using a perfect phylogeny," Biostatistics, vol. 8, pp. 32-52, 2007.
    • (2007) Biostatistics , vol.8 , pp. 32-52
    • Clark, T.G.1    De Iorio, M.2    Griffiths, R.C.3
  • 25
    • 0029150074 scopus 로고
    • A comparison of linkage disequilibrium measures for fine-scale mapping
    • B. Devlin and N. Risch, "A comparison of linkage disequilibrium measures for fine-scale mapping," Genomics, vol. 29, pp. 311-22, 1995.
    • (1995) Genomics , vol.29 , pp. 311-322
    • Devlin, B.1    Risch, N.2
  • 28
    • 21744432053 scopus 로고    scopus 로고
    • Computing bayes factors by combining simulation and asymptotic approximations
    • T. J. DiCiccio, R. E. Kass, A. Raftery, and L. Wasserman, "Computing bayes factors by combining simulation and asymptotic approximations," J. Amer. Statist Soc., vol. 92, pp. 903-915, 1997.
    • (1997) J. Amer. Statist Soc , vol.92 , pp. 903-915
    • DiCiccio, T.J.1    Kass, R.E.2    Raftery, A.3    Wasserman, L.4
  • 29
    • 0024627518 scopus 로고
    • Inferring decision trees using the minimum description length principle
    • J. R. Quinlan and R. L. Rivest, "Inferring decision trees using the minimum description length principle," Inf. Comp., vol. 80, pp. 227-248, 1989.
    • (1989) Inf. Comp , vol.80 , pp. 227-248
    • Quinlan, J.R.1    Rivest, R.L.2
  • 30
    • 0037862880 scopus 로고    scopus 로고
    • Universal motor efficiency improvement using evolutionary optimization
    • Jun
    • D. Posada and K. A. Crandall, "Universal motor efficiency improvement using evolutionary optimization," IEEE Trans. Ind. Electron., vol. 50, no. 3, pp. 602-11, Jun. 2003.
    • (2003) IEEE Trans. Ind. Electron , vol.50 , Issue.3 , pp. 602-611
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model
    • R. R. Hudson, "Generating samples under a Wright-Fisher neutral model," Bioinformatics, vol. 18, pp. 337-8, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 32
    • 28444445926 scopus 로고    scopus 로고
    • R Foundation for Statistical Computing, Vienna, Austria, Online, Available:, ISBN 3-900051-07-0
    • R Development Core Team, "R: A language and environment for statistical computing," R Foundation for Statistical Computing, Vienna, Austria, 2005. [Online]. Available: http://www.R-project.org, ISBN 3-900051-07-0
    • (2005) R: A language and environment for statistical computing
  • 35
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • M. Stephens and P. Donnelly, "A comparison of Bayesian methods for haplotype reconstruction from population genotype data," Amer. J. Hum. Genet., vol. 73, pp. 1162-9, 2003.
    • (2003) Amer. J. Hum. Genet , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.