메뉴 건너뛰기




Volumn 28, Issue 2, 2003, Pages 197-224

Evaluating placental inter-ordinal phylogenies with novel sequences including RAG1, γ-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models

Author keywords

[No Author keywords available]

Indexed keywords

CHRYSOCHLORIDAE; EDENTATA; ELEPHANT; ERINACEIDAE; HYLOMYINAE; MAMMALIA; NEUROTRICHUS GIBBSII; ODOBENUS ROSMARUS; PHOCIDAE; PROCAVIIDAE; RODENTIA; SIRENIA; SOLENODON; SORICIDAE; TENRECIDAE; UROPSILUS;

EID: 0141609706     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(03)00115-5     Document Type: Conference Paper
Times cited : (107)

References (91)
  • 2
    • 0033920569 scopus 로고    scopus 로고
    • Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
    • Adachi, J., Waddell, P.J., Martin, W., Hasegawa, M., 2000. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J. Mol. Evol. 50, 348-358.
    • (2000) J. Mol. Evol. , vol.50 , pp. 348-358
    • Adachi, J.1    Waddell, P.J.2    Martin, W.3    Hasegawa, M.4
  • 3
    • 0035028769 scopus 로고    scopus 로고
    • Molecular phylogeny and divergence time estimates for major rodent groups: Evidence from multiple genes
    • Adkins, R.M., Gelke, E.L., Rowe, D., Honeycutt, R.L., 2001. Molecular phylogeny and divergence time estimates for major rodent groups: evidence from multiple genes. Mol. Biol. Evol. 18, 777-791.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 777-791
    • Adkins, R.M.1    Gelke, E.L.2    Rowe, D.3    Honeycutt, R.L.4
  • 5
    • 0033593880 scopus 로고    scopus 로고
    • The mitochondrial DNA molecule of the aardvark, Orycteropus afer, and the position of the Tubulidentata in the eutherian tree
    • Arnason, U., Gullberg, A., Janke, A., 1999. The mitochondrial DNA molecule of the aardvark, Orycteropus afer, and the position of the Tubulidentata in the eutherian tree. Proc. R. Soc. Lond. B Biol. Sci. 266, 339-345.
    • (1999) Proc. R. Soc. Lond. B Biol. Sci. , vol.266 , pp. 339-345
    • Arnason, U.1    Gullberg, A.2    Janke, A.3
  • 6
    • 0030799649 scopus 로고    scopus 로고
    • Phylogenetic analyses of mitochondrial DNa suggest a sister group relationship between Xenarthra (Edentata) and ferungulates
    • Arnason, U., Gullberg, A., Janke, A., 1997. Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and ferungulates. Mol. Biol. Evol. 14, 762-768.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 762-768
    • Arnason, U.1    Gullberg, A.2    Janke, A.3
  • 7
    • 0007228548 scopus 로고
    • Vertical postures and climbing in the morphotype of Primatomorpha: Implications for locomotor evolution in primate history
    • Coppens, Y., Senut, B. (Eds.), Editions du CNRS (Cahiers de Paléoanthropologie), Paris
    • Beard, K.C., 1991. Vertical postures and climbing in the morphotype of Primatomorpha: Implications for locomotor evolution in primate history. In: Coppens, Y., Senut, B. (Eds.), Origines de la Bipédie chez les Hominidés. Editions du CNRS (Cahiers de Paléoanthropologie), Paris, pp. 79-87.
    • (1991) Origines de la Bipédie Chez Les Hominidés , pp. 79-87
    • Beard, K.C.1
  • 9
    • 84983987863 scopus 로고
    • The skull of Ictops and the classification of the Insectivora
    • Butler, P.M., 1956. The skull of Ictops and the classification of the Insectivora. Proc. Zool. Soc. London 126, 453-481.
    • (1956) Proc. Zool. Soc. London , vol.126 , pp. 453-481
    • Butler, P.M.1
  • 10
    • 0002241871 scopus 로고
    • The problem of insectivore classification
    • Joysey, K., Kemp, T. (Eds.), Oliver & Boyd, Edinburgh
    • Butler, P.M., 1972. The problem of insectivore classification. In: Joysey, K., Kemp, T. (Eds.), Studies in Vertebrate Evolution. Oliver & Boyd, Edinburgh, pp. 253-265.
    • (1972) Studies in Vertebrate Evolution , pp. 253-265
    • Butler, P.M.1
  • 13
    • 0032125465 scopus 로고    scopus 로고
    • Molecules remodel the mammalian tree
    • de Jong, W.W., 1998. Molecules remodel the mammalian tree. Trends Ecol. Evol. 13, 270-275.
    • (1998) Trends Ecol. Evol. , vol.13 , pp. 270-275
    • De Jong, W.W.1
  • 14
    • 0002373867 scopus 로고
    • Eye lens crystallins and the phylogeny of placental orders: Evidence for a macroscelid-paenungulate clade
    • Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Springer-Verlag, New York
    • de Jong, W.W., Leunissen, J.A.M., Wistow, G.J., 1993. Eye lens crystallins and the phylogeny of placental orders: evidence for a macroscelid-paenungulate clade. In: Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Mammal Phylogeny: Placentals. Springer-Verlag, New York, pp. 5-12.
    • (1993) Mammal Phylogeny: Placentals , pp. 5-12
    • De Jong, W.W.1    Leunissen, J.A.M.2    Wistow, G.J.3
  • 16
    • 0036368966 scopus 로고    scopus 로고
    • Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs
    • Douady, C.J., Catzeflis, F., Kao, D.J., Springer, M.S., Stanhope, M.J., 2001. Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs. Mol. Phyl. Evol. 22, 357-363.
    • (2001) Mol. Phyl. Evol. , vol.22 , pp. 357-363
    • Douady, C.J.1    Catzeflis, F.2    Kao, D.J.3    Springer, M.S.4    Stanhope, M.J.5
  • 17
    • 0036402765 scopus 로고    scopus 로고
    • Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews
    • Douady, C. J., Chatelier, P.I., Madsen, O., de Jong, W.W., Catzeflise, F., Springer, M.S., Stanhope, J.M., 2002. Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews. Mol. Phyl. Evol. 25, 200-209.
    • (2002) Mol. Phyl. Evol. , vol.25 , pp. 200-209
    • Douady, C.J.1    Chatelier, P.I.2    Madsen, O.3    De Jong, W.W.4    Catzeflise, F.5    Springer, M.S.6    Stanhope, J.M.7
  • 18
    • 0037329108 scopus 로고    scopus 로고
    • Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
    • Douady, C.J., Delsuc, F., Boucher, Y., Doolittle, W.F., Douzery, E.J., 2003. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 20, 248-254.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 248-254
    • Douady, C.J.1    Delsuc, F.2    Boucher, Y.3    Doolittle, W.F.4    Douzery, E.J.5
  • 19
    • 0034988036 scopus 로고    scopus 로고
    • Molecular dating and biogeography of the early placental mammal radiation
    • Eizirik, E., Murphy, W.J., O'Brien, J.S., 2001. Molecular dating and biogeography of the early placental mammal radiation. J. Hered. 92, 212-219.
    • (2001) J. Hered. , vol.92 , pp. 212-219
    • Eizirik, E.1    Murphy, W.J.2    O'Brien, J.S.3
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 0030989922 scopus 로고    scopus 로고
    • More DNa support for a Cetacea/Hippopotamidae clade: The blood-clotting protein gene gamma fibrinogen
    • Gatesy, J., 1997. More DNA support for a Cetacea/Hippopotamidae clade: the blood-clotting protein gene gamma fibrinogen. Mol. Biol. Evol. 14 (5), 537-543.
    • (1997) Mol. Biol. Evol. , vol.14 , Issue.5 , pp. 537-543
    • Gatesy, J.1
  • 23
    • 0033084945 scopus 로고    scopus 로고
    • The stability of cladistic relationships between Cetacea and higher level artiodactyl taxa
    • Gatesy, J., Milinkovitch, M., Waddell, V., Stanhope, M., 1999. The stability of cladistic relationships between Cetacea and higher level artiodactyl taxa. Syst. Biol. 48, 6-20.
    • (1999) Syst. Biol. , vol.48 , pp. 6-20
    • Gatesy, J.1    Milinkovitch, M.2    Waddell, V.3    Stanhope, M.4
  • 27
    • 0029947159 scopus 로고    scopus 로고
    • Phylogenetic position of cetaceans relative to artiodactyls: Reanalysis of mitochondrial and nuclear sequences
    • Hasegawa, M., Adachi, J., 1996. Phylogenetic position of cetaceans relative to artiodactyls: Reanalysis of mitochondrial and nuclear sequences. Mol. Biol. Evol. 13, 710-717.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 710-717
    • Hasegawa, M.1    Adachi, J.2
  • 28
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H., Yano, T., 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21, 160-174.
    • (1985) J. Mol. Evol. , vol.21 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 29
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy, M.D., Penny, D., 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38, 297-309.
    • (1989) Syst. Zool. , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 30
    • 0344675456 scopus 로고
    • A review of the shrew-moles (genus Uropsilus) of China and Burma
    • Hoffmann, R.S., 1984. A review of the shrew-moles (genus Uropsilus) of China and Burma. J. Mamm. Soc. Japan 10, 69-80.
    • (1984) J. Mamm. Soc. Japan , vol.10 , pp. 69-80
    • Hoffmann, R.S.1
  • 31
    • 0035986875 scopus 로고    scopus 로고
    • Rodent phylogeny and a timescale for the evolution of Glires: Evidence from an extensive taxon sampling using three nuclear genes
    • Huchon, D., Madsen, O., Sibbald, M.J., Ament, K., Stanhope, M.J., Catzeflis, F., de Jong, W.W., Douzery, E.J., 2002. Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes. Mol. Biol. Evol. 19, 1053-1065.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1053-1065
    • Huchon, D.1    Madsen, O.2    Sibbald, M.J.3    Ament, K.4    Stanhope, M.J.5    Catzeflis, F.6    De Jong, W.W.7    Douzery, E.J.8
  • 32
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J.P., Ronquist, F., 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 8, 754-755.
    • (2001) Bioinformatics , vol.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 33
    • 85030949491 scopus 로고    scopus 로고
    • University of California, San Diego and Uppsala University, Sweden
    • Huelsenbeck, J.P., Ronquist, F., 2002. MRBAYES 3.0b. University of California, San Diego and Uppsala University, Sweden.
    • (2002) MRBAYES 3.0b
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 34
    • 0039359657 scopus 로고
    • Limitations of molecular methods for establishing the phylogeny of mammals, with special reference to the position of elephants
    • Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Springer-Verlag, New York
    • Irwin, D.M., Wilson, A.C., 1993. Limitations of molecular methods for establishing the phylogeny of mammals, with special reference to the position of elephants. In: Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Mammal Phylogeny: Placentals. Springer-Verlag, New York, pp. 257-267.
    • (1993) Mammal Phylogeny: Placentals , pp. 257-267
    • Irwin, D.M.1    Wilson, A.C.2
  • 35
    • 0036728808 scopus 로고    scopus 로고
    • Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution
    • Jow, H., Hudelot, C., Rattray, M., Higgs, P.G., 2002. Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution. Mol. Biol. Evol. 19, 1591-1601.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1591-1601
    • Jow, H.1    Hudelot, C.2    Rattray, M.3    Higgs, P.G.4
  • 36
    • 0034967880 scopus 로고    scopus 로고
    • Marsupials and Eutherians reunited: Genetic evidence for the Theria hypothesis of mammalian evolution
    • Killian, J.K., Buckley, T.R., Stewart, N., Munday, B.L., Jirtle, R.L., 2001. Marsupials and Eutherians reunited: genetic evidence for the Theria hypothesis of mammalian evolution. Mamm. Genome. 12, 513-517.
    • (2001) Mamm. Genome , vol.12 , pp. 513-517
    • Killian, J.K.1    Buckley, T.R.2    Stewart, N.3    Munday, B.L.4    Jirtle, R.L.5
  • 37
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino, H., Hasegawa, M., 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29, 170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 38
    • 0025181359 scopus 로고
    • Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
    • Kishino, H., Miyata, T., Hasegawa, M., 1990. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 30, 151-160.
    • (1990) J. Mol. Evol. , vol.30 , pp. 151-160
    • Kishino, H.1    Miyata, T.2    Hasegawa, M.3
  • 39
    • 0027482104 scopus 로고
    • Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
    • Kumazawa, Y., Nishida, M., 1993. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J. Mol. Evol. 37, 380-398.
    • (1993) J. Mol. Evol. , vol.37 , pp. 380-398
    • Kumazawa, Y.1    Nishida, M.2
  • 40
    • 0035933310 scopus 로고    scopus 로고
    • Birth of a gene: Locus of neuronal BC200 snmRNa in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage
    • Kuryshev, V.Y., Skryabin, B.V., Kremerskothen, J., Jurka, J., Brosius, J., 2002. Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage. J. Mol. Biol. 309, 1049-1066.
    • (2002) J. Mol. Biol. , vol.309 , pp. 1049-1066
    • Kuryshev, V.Y.1    Skryabin, B.V.2    Kremerskothen, J.3    Jurka, J.4    Brosius, J.5
  • 41
    • 0037055264 scopus 로고    scopus 로고
    • Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires
    • Lin, Y., Waddell, P.J., Penny, D., 2002. Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires. Gene 294, 119-129.
    • (2002) Gene , vol.294 , pp. 119-129
    • Lin, Y.1    Waddell, P.J.2    Penny, D.3
  • 42
    • 0033084948 scopus 로고    scopus 로고
    • Phylogenetic assessment of molecular and morphological data for eutherian mammals
    • Lin, F.-G.R., Miyamoto, M.M., 1999. Phylogenetic assessment of molecular and morphological data for eutherian mammals. Syst. Biol. 48, 5.
    • (1999) Syst. Biol. , vol.48 , pp. 5
    • Lin, F.-G.R.1    Miyamoto, M.M.2
  • 45
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart, P.J., Steel, M.A., Hendy, M.D., Penny, D., 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 46
    • 0002825067 scopus 로고
    • Definition and relationships of Lipotyphla
    • Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Springer-Verlag, New York
    • MacPhee, R.D.E., Novacek, M., 1993. Definition and relationships of Lipotyphla. In: Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Mammal Phylogeny: Placentals. Springer-Verlag, New York, pp. 13-29.
    • (1993) Mammal Phylogeny: Placentals , pp. 13-29
    • MacPhee, R.D.E.1    Novacek, M.2
  • 48
    • 0036377364 scopus 로고    scopus 로고
    • Molecular support for Afrotheria and the polyphyly of Lipotyphla based on analyses of the growth hormone receptor gene
    • Malia Jr., M.J., Adkins, R.M., Allard, M.W., 2002. Molecular support for Afrotheria and the polyphyly of Lipotyphla based on analyses of the growth hormone receptor gene. Mol. Phylogenet. Evol. 24, 91-101.
    • (2002) Mol. Phylogenet. Evol. , vol.24 , pp. 91-101
    • Malia Jr., M.J.1    Adkins, R.M.2    Allard, M.W.3
  • 49
    • 0002074955 scopus 로고
    • Toward a phylogenetic classification of the Mammalia
    • Luckett, W.P., Szalay, F. (Eds.), Plenum, New York
    • McKenna, M.C., 1975. Toward a phylogenetic classification of the Mammalia. In: Luckett, W.P., Szalay, F. (Eds.), Phylogeny of the Primates: A Multidisiplinary Approach. Plenum, New York, pp. 21-46.
    • (1975) Phylogeny of the Primates: A Multidisiplinary Approach , pp. 21-46
    • McKenna, M.C.1
  • 50
    • 0034350322 scopus 로고    scopus 로고
    • c-myc gene sequences and the phylogeny of bats and other eutherian mammals
    • Miyamoto, M.M., Porter, C.A., Goodman, M., 2000. c-myc gene sequences and the phylogeny of bats and other eutherian mammals. Syst. Biol. 49, 501-514.
    • (2000) Syst. Biol. , vol.49 , pp. 501-514
    • Miyamoto, M.M.1    Porter, C.A.2    Goodman, M.3
  • 51
    • 0030969833 scopus 로고    scopus 로고
    • Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences
    • Montgelard, C., Catzeflis, F.M., Douzery, E., 1997. Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences. Mol. Biol. Evol. 14, 550-559.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 550-559
    • Montgelard, C.1    Catzeflis, F.M.2    Douzery, E.3
  • 55
    • 0026557719 scopus 로고
    • Mammalian phylogeny: Shaking the tree
    • Novacek, M.J., 1992. Mammalian phylogeny: shaking the tree. Nature 356, 121-125.
    • (1992) Nature , vol.356 , pp. 121-125
    • Novacek, M.J.1
  • 59
    • 0034106726 scopus 로고    scopus 로고
    • Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters
    • Ota, R., Waddell, P.J., Hasegawa, M., Shimodaira, H., Kishino, H., 2000. Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters. Mol. Biol. Evol. 17, 798-803.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 798-803
    • Ota, R.1    Waddell, P.J.2    Hasegawa, M.3    Shimodaira, H.4    Kishino, H.5
  • 60
    • 0031554287 scopus 로고    scopus 로고
    • The platypus put in its place
    • Penny, D., Hasegawa, M., 1997. The platypus put in its place. Nature 387, 549-550.
    • (1997) Nature , vol.387 , pp. 549-550
    • Penny, D.1    Hasegawa, M.2
  • 61
    • 0019951634 scopus 로고
    • Testing the theory of evolution by comparing phylogenetic trees constructed from five different protein sequences
    • Penny, D., Foulds, L.R., Hendy, M.D., 1982. Testing the theory of evolution by comparing phylogenetic trees constructed from five different protein sequences. Nature 297, 197-200.
    • (1982) Nature , vol.297 , pp. 197-200
    • Penny, D.1    Foulds, L.R.2    Hendy, M.D.3
  • 63
    • 0026808975 scopus 로고
    • Heterogeneity in the substitution process of amino acid sites of proteins coded for by mitochondrial DNA
    • Reeves, J.H., 1992. Heterogeneity in the substitution process of amino acid sites of proteins coded for by mitochondrial DNA. J. Mol. Evol. 35, 17-31.
    • (1992) J. Mol. Evol. , vol.35 , pp. 17-31
    • Reeves, J.H.1
  • 64
    • 0014623982 scopus 로고
    • Pinniped phylogeny
    • Sarich, V.M., 1969. Pinniped phylogeny. Syst. Zool. 18, 416-422.
    • (1969) Syst. Zool. , vol.18 , pp. 416-422
    • Sarich, V.M.1
  • 66
    • 0035108258 scopus 로고    scopus 로고
    • SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates
    • Schmitz, J., Ohme, M., Zischler, H., 2001. SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates. Genetics 157, 777-784.
    • (2001) Genetics , vol.157 , pp. 777-784
    • Schmitz, J.1    Ohme, M.2    Zischler, H.3
  • 67
    • 84890829458 scopus 로고
    • Modified sequentially rejective multiple test procedures
    • Shaffer, J.P., 1986. Modified sequentially rejective multiple test procedures. J. Amer. Statist. Assoc. 76, 826-831.
    • (1986) J. Amer. Statist. Assoc. , vol.76 , pp. 826-831
    • Shaffer, J.P.1
  • 68
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H., Hasegawa, M., 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 69
    • 0032085453 scopus 로고    scopus 로고
    • Higher taxonomic relationships among extant mammals based on morphology, with selected comparisons of results from molecular data
    • Shoshani, J., McKenna, M.C., 1998. Higher taxonomic relationships among extant mammals based on morphology, with selected comparisons of results from molecular data. Mol. Phyl. Evol. 9, 572-584.
    • (1998) Mol. Phyl. Evol. , vol.9 , pp. 572-584
    • Shoshani, J.1    McKenna, M.C.2
  • 70
    • 0002015259 scopus 로고
    • The principles of classification and the classification of mammals
    • Simpson, G.G., 1945. The principles of classification and the classification of mammals. Bull. Amer. Mus. Nat. Hist. 85, 1-350.
    • (1945) Bull. Amer. Mus. Nat. Hist. , vol.85 , pp. 1-350
    • Simpson, G.G.1
  • 71
    • 0033161156 scopus 로고    scopus 로고
    • Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates
    • Sorenson, M.D., Ast, J.C., Dimcheff, D.E., Yuri, T., Mindell, D.P., 1999. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol. Phyl. Evol. 12, 105-114.
    • (1999) Mol. Phyl. Evol. , vol.12 , pp. 105-114
    • Sorenson, M.D.1    Ast, J.C.2    Dimcheff, D.E.3    Yuri, T.4    Mindell, D.P.5
  • 72
    • 0033085041 scopus 로고    scopus 로고
    • Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition
    • Springer, M.S., Amrine, H.M., Burk, A., Stanhope, M.J., 1999. Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition. Syst. Biol. 48, 65-75.
    • (1999) Syst. Biol. , vol.48 , pp. 65-75
    • Springer, M.S.1    Amrine, H.M.2    Burk, A.3    Stanhope, M.J.4
  • 74
    • 0035793899 scopus 로고    scopus 로고
    • Phylogenetics. Which mammalian supertree to bark up?
    • Springer, M.S., de Jong, W.W., 2001. Phylogenetics. Which mammalian supertree to bark up? Science 291, 1709-1711.
    • (2001) Science , vol.291 , pp. 1709-1711
    • Springer, M.S.1    De Jong, W.W.2
  • 75
    • 0026870120 scopus 로고
    • A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly
    • Stanhope, M.J., Czelusniak, J., Si, J.S., Nickerson, J., Goodman, M., 1992. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1, 148-160.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 148-160
    • Stanhope, M.J.1    Czelusniak, J.2    Si, J.S.3    Nickerson, J.4    Goodman, M.5
  • 77
    • 0002618746 scopus 로고    scopus 로고
    • Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics
    • Sullivan, J., Swofford, D.L., 1997. Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics. J. Mammal. Evol. 4, 77-86.
    • (1997) J. Mammal. Evol. , vol.4 , pp. 77-86
    • Sullivan, J.1    Swofford, D.L.2
  • 79
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Sinauer Associates, Sunderland, Massachusetts
    • Swofford, D.L., Olsen, G.J., Waddell, P.J., Hillis, D.M., 1996. Phylogenetic inference. In: Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Molecular Systematics, 2nd ed. Sinauer Associates, Sunderland, Massachusetts, pp. 407-514.
    • (1996) Molecular Systematics, 2nd Ed. , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 82
    • 0031149251 scopus 로고    scopus 로고
    • Links between maximum likelihood and maximum parsimony under a simple model of site substitution
    • Tuffley, C., Steel, M.A., 1997. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull. Math. Biol. 59, 581-607.
    • (1997) Bull. Math. Biol. , vol.59 , pp. 581-607
    • Tuffley, C.1    Steel, M.A.2
  • 83
    • 0033085003 scopus 로고    scopus 로고
    • Assessing the Cretaceous superordinal divergence times within birds and placental mammals using whole mitochondrial protein sequences and an extended statistical framework
    • Waddell, P.J., Cao, Y., Hasegawa, M., Mindell, D., 1999a. Assessing the Cretaceous superordinal divergence times within birds and placental mammals using whole mitochondrial protein sequences and an extended statistical framework. Syst. Biol. 48, 119-137.
    • (1999) Syst. Biol. , vol.48 , pp. 119-137
    • Waddell, P.J.1    Cao, Y.2    Hasegawa, M.3    Mindell, D.4
  • 84
    • 0033084970 scopus 로고    scopus 로고
    • Using novel phylogenetic methods to evaluate mammalian mtDNA, including AA invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the position of hedgehog, armadillo, and elephant
    • Waddell, P.J., Cao, Y., Hauf, J., Hasegawa, M., 1999b. Using novel phylogenetic methods to evaluate mammalian mtDNA, including AA invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the position of hedgehog, armadillo, and elephant. Syst. Biol. 48, 31-53.
    • (1999) Syst. Biol. , vol.48 , pp. 31-53
    • Waddell, P.J.1    Cao, Y.2    Hauf, J.3    Hasegawa, M.4
  • 85
    • 0033635534 scopus 로고    scopus 로고
    • Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests
    • Waddell, P.J., Kishino, H., Ota, R., 2000. Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests. Mol. Biol. Evol. 17, 1988-1992.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1988-1992
    • Waddell, P.J.1    Kishino, H.2    Ota, R.3
  • 86
    • 0035752767 scopus 로고    scopus 로고
    • A phylogenetic foundation for comparative mammalian genomics
    • Waddell, P.J., Kishino, H., Ota, R., 2001. A phylogenetic foundation for comparative mammalian genomics. Genome Inform. 12, 141-154.
    • (2001) Genome Inform. , vol.12 , pp. 141-154
    • Waddell, P.J.1    Kishino, H.2    Ota, R.3
  • 87
    • 0142089657 scopus 로고    scopus 로고
    • Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data
    • Waddell, P.J., Kishino, H., Ota, R., 2002. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data. Genome Inform. 13, 82-92.
    • (2002) Genome Inform. , vol.13 , pp. 82-92
    • Waddell, P.J.1    Kishino, H.2    Ota, R.3
  • 88
    • 0033085002 scopus 로고    scopus 로고
    • Progress in resolving the interordinal relationships of placental mammals
    • Waddell, P.J., Okada, N., Hasegawa, M., 1999c. Progress in resolving the interordinal relationships of placental mammals. Syst. Biol. 48, 1-5.
    • (1999) Syst. Biol. , vol.48 , pp. 1-5
    • Waddell, P.J.1    Okada, N.2    Hasegawa, M.3
  • 89
    • 0002574561 scopus 로고    scopus 로고
    • Evolutionary trees of apes and humans from DNA sequences
    • Lock, A.J., Peters, C.R. (Eds.), Oxford University Press, Oxford, England
    • Waddell, P.J., Penny, D., 1996. Evolutionary trees of apes and humans from DNA sequences. In: Lock, A.J., Peters, C.R. (Eds.), Handbook of Human Symbolic Evolution. Oxford University Press, Oxford, England, pp. 53-73.
    • (1996) Handbook of Human Symbolic Evolution , pp. 53-73
    • Waddell, P.J.1    Penny, D.2
  • 90
    • 0031297695 scopus 로고    scopus 로고
    • General time reversible distances with unequal rates across sites: Mixing Γ and inverse Gaussian distributions with invariant sites
    • Waddell, P.J., Steel, M.A., 1997. General time reversible distances with unequal rates across sites: mixing Γ and inverse Gaussian distributions with invariant sites. Mol. Phyl. Evol. 8, 398-414.
    • (1997) Mol. Phyl. Evol. , vol.8 , pp. 398-414
    • Waddell, P.J.1    Steel, M.A.2
  • 91
    • 0033070455 scopus 로고    scopus 로고
    • Phylogenetic affinities of tarsier in the context of primate Alu repeats
    • Zietkiewicz, E., Richer, C., Labuda, D., 1999. Phylogenetic affinities of tarsier in the context of primate Alu repeats. Mol. Phylogenet. Evol. 11, 77-83.
    • (1999) Mol. Phylogenet. Evol. , vol.11 , pp. 77-83
    • Zietkiewicz, E.1    Richer, C.2    Labuda, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.