-
2
-
-
0033920569
-
Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
-
Adachi, J., Waddell, P.J., Martin, W., Hasegawa, M., 2000. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J. Mol. Evol. 50, 348-358.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 348-358
-
-
Adachi, J.1
Waddell, P.J.2
Martin, W.3
Hasegawa, M.4
-
3
-
-
0035028769
-
Molecular phylogeny and divergence time estimates for major rodent groups: Evidence from multiple genes
-
Adkins, R.M., Gelke, E.L., Rowe, D., Honeycutt, R.L., 2001. Molecular phylogeny and divergence time estimates for major rodent groups: evidence from multiple genes. Mol. Biol. Evol. 18, 777-791.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 777-791
-
-
Adkins, R.M.1
Gelke, E.L.2
Rowe, D.3
Honeycutt, R.L.4
-
4
-
-
0037062433
-
Mammalian mitogenomic relationships and the root of the eutherian tree
-
Arnason, U., Adegoke, J.A., Bodin, K., Born, E.W., Esa, Y.B., Gullberg, A., Nilsson, M., Short, R.V., Xu, X., Janke, A., 2002. Mammalian mitogenomic relationships and the root of the eutherian tree. Proc. Natl. Acad. Sci. USA 99, 8151-8156.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8151-8156
-
-
Arnason, U.1
Adegoke, J.A.2
Bodin, K.3
Born, E.W.4
Esa, Y.B.5
Gullberg, A.6
Nilsson, M.7
Short, R.V.8
Xu, X.9
Janke, A.10
-
5
-
-
0033593880
-
The mitochondrial DNA molecule of the aardvark, Orycteropus afer, and the position of the Tubulidentata in the eutherian tree
-
Arnason, U., Gullberg, A., Janke, A., 1999. The mitochondrial DNA molecule of the aardvark, Orycteropus afer, and the position of the Tubulidentata in the eutherian tree. Proc. R. Soc. Lond. B Biol. Sci. 266, 339-345.
-
(1999)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.266
, pp. 339-345
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
-
6
-
-
0030799649
-
Phylogenetic analyses of mitochondrial DNa suggest a sister group relationship between Xenarthra (Edentata) and ferungulates
-
Arnason, U., Gullberg, A., Janke, A., 1997. Phylogenetic analyses of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and ferungulates. Mol. Biol. Evol. 14, 762-768.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 762-768
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
-
7
-
-
0007228548
-
Vertical postures and climbing in the morphotype of Primatomorpha: Implications for locomotor evolution in primate history
-
Coppens, Y., Senut, B. (Eds.), Editions du CNRS (Cahiers de Paléoanthropologie), Paris
-
Beard, K.C., 1991. Vertical postures and climbing in the morphotype of Primatomorpha: Implications for locomotor evolution in primate history. In: Coppens, Y., Senut, B. (Eds.), Origines de la Bipédie chez les Hominidés. Editions du CNRS (Cahiers de Paléoanthropologie), Paris, pp. 79-87.
-
(1991)
Origines de la Bipédie Chez Les Hominidés
, pp. 79-87
-
-
Beard, K.C.1
-
8
-
-
12044257391
-
Partitioning and combining data in phylogenetic analysis
-
Bull, J.J., Huelsenbeck, J.P., Cunningham, C.W., Swofford, D.L., Waddell, P.J., 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42, 384-397.
-
(1993)
Syst. Biol.
, vol.42
, pp. 384-397
-
-
Bull, J.J.1
Huelsenbeck, J.P.2
Cunningham, C.W.3
Swofford, D.L.4
Waddell, P.J.5
-
9
-
-
84983987863
-
The skull of Ictops and the classification of the Insectivora
-
Butler, P.M., 1956. The skull of Ictops and the classification of the Insectivora. Proc. Zool. Soc. London 126, 453-481.
-
(1956)
Proc. Zool. Soc. London
, vol.126
, pp. 453-481
-
-
Butler, P.M.1
-
10
-
-
0002241871
-
The problem of insectivore classification
-
Joysey, K., Kemp, T. (Eds.), Oliver & Boyd, Edinburgh
-
Butler, P.M., 1972. The problem of insectivore classification. In: Joysey, K., Kemp, T. (Eds.), Studies in Vertebrate Evolution. Oliver & Boyd, Edinburgh, pp. 253-265.
-
(1972)
Studies in Vertebrate Evolution
, pp. 253-265
-
-
Butler, P.M.1
-
11
-
-
0031694349
-
Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders
-
Cao, Y., Janke, A., Waddell, P.J., Westerman, M., O, Murata, S., Okada, N., Pääbo, S., Hasegawa, M., 1998. Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders. J. Mol. Evol. 47, 307-322.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 307-322
-
-
Cao, Y.1
Janke, A.2
Waddell, P.J.3
Westerman, M.O.4
Murata, S.5
Okada, N.6
Pääbo, S.7
Hasegawa, M.8
-
12
-
-
0029993941
-
The guinea-pig is not a rodent
-
D'Erchia, A.M., Gissi, C., Pesole, G., Saccone, C., Arnason, U., 1996. The guinea-pig is not a rodent. Nature 381, 597-600.
-
(1996)
Nature
, vol.381
, pp. 597-600
-
-
D'Erchia, A.M.1
Gissi, C.2
Pesole, G.3
Saccone, C.4
Arnason, U.5
-
13
-
-
0032125465
-
Molecules remodel the mammalian tree
-
de Jong, W.W., 1998. Molecules remodel the mammalian tree. Trends Ecol. Evol. 13, 270-275.
-
(1998)
Trends Ecol. Evol.
, vol.13
, pp. 270-275
-
-
De Jong, W.W.1
-
14
-
-
0002373867
-
Eye lens crystallins and the phylogeny of placental orders: Evidence for a macroscelid-paenungulate clade
-
Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Springer-Verlag, New York
-
de Jong, W.W., Leunissen, J.A.M., Wistow, G.J., 1993. Eye lens crystallins and the phylogeny of placental orders: evidence for a macroscelid-paenungulate clade. In: Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Mammal Phylogeny: Placentals. Springer-Verlag, New York, pp. 5-12.
-
(1993)
Mammal Phylogeny: Placentals
, pp. 5-12
-
-
De Jong, W.W.1
Leunissen, J.A.M.2
Wistow, G.J.3
-
15
-
-
0036792101
-
Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting
-
Delsuc, F., Scally, M., Madsen, O., Stanhope, M.J., de Jong, W.W., Catzeflis, F.M., Springer, M.S., Douzery, E.J., 2002. Molecular phylogeny of living xenarthrans and the impact of character and taxon sampling on the placental tree rooting. Mol. Biol. Evol. 19, 1656-1671.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1656-1671
-
-
Delsuc, F.1
Scally, M.2
Madsen, O.3
Stanhope, M.J.4
De Jong, W.W.5
Catzeflis, F.M.6
Springer, M.S.7
Douzery, E.J.8
-
16
-
-
0036368966
-
Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs
-
Douady, C.J., Catzeflis, F., Kao, D.J., Springer, M.S., Stanhope, M.J., 2001. Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs. Mol. Phyl. Evol. 22, 357-363.
-
(2001)
Mol. Phyl. Evol.
, vol.22
, pp. 357-363
-
-
Douady, C.J.1
Catzeflis, F.2
Kao, D.J.3
Springer, M.S.4
Stanhope, M.J.5
-
17
-
-
0036402765
-
Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews
-
Douady, C. J., Chatelier, P.I., Madsen, O., de Jong, W.W., Catzeflise, F., Springer, M.S., Stanhope, J.M., 2002. Molecular phylogenetic evidence confirming the Eulipotyphla concept and in support of hedgehogs as the sister group to shrews. Mol. Phyl. Evol. 25, 200-209.
-
(2002)
Mol. Phyl. Evol.
, vol.25
, pp. 200-209
-
-
Douady, C.J.1
Chatelier, P.I.2
Madsen, O.3
De Jong, W.W.4
Catzeflise, F.5
Springer, M.S.6
Stanhope, J.M.7
-
18
-
-
0037329108
-
Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability
-
Douady, C.J., Delsuc, F., Boucher, Y., Doolittle, W.F., Douzery, E.J., 2003. Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Mol. Biol. Evol. 20, 248-254.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 248-254
-
-
Douady, C.J.1
Delsuc, F.2
Boucher, Y.3
Doolittle, W.F.4
Douzery, E.J.5
-
19
-
-
0034988036
-
Molecular dating and biogeography of the early placental mammal radiation
-
Eizirik, E., Murphy, W.J., O'Brien, J.S., 2001. Molecular dating and biogeography of the early placental mammal radiation. J. Hered. 92, 212-219.
-
(2001)
J. Hered.
, vol.92
, pp. 212-219
-
-
Eizirik, E.1
Murphy, W.J.2
O'Brien, J.S.3
-
20
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
21
-
-
0030989922
-
More DNa support for a Cetacea/Hippopotamidae clade: The blood-clotting protein gene gamma fibrinogen
-
Gatesy, J., 1997. More DNA support for a Cetacea/Hippopotamidae clade: the blood-clotting protein gene gamma fibrinogen. Mol. Biol. Evol. 14 (5), 537-543.
-
(1997)
Mol. Biol. Evol.
, vol.14
, Issue.5
, pp. 537-543
-
-
Gatesy, J.1
-
22
-
-
0001804147
-
Molecular evidence for the phylogenetic affinities of Cetacea
-
Thewissen, J. (Ed.), Plenum, New York
-
Gatesy, J., 1998. Molecular evidence for the phylogenetic affinities of Cetacea. In: Thewissen, J. (Ed.), The Emergence of Whales: Evolutionary Patterns in the Origin of Cetacea. Advances in Vertebrate Paleobiology Series. Plenum, New York, pp. 63-111.
-
(1998)
The Emergence of Whales: Evolutionary Patterns in the Origin of Cetacea. Advances in Vertebrate Paleobiology Series
, pp. 63-111
-
-
Gatesy, J.1
-
23
-
-
0033084945
-
The stability of cladistic relationships between Cetacea and higher level artiodactyl taxa
-
Gatesy, J., Milinkovitch, M., Waddell, V., Stanhope, M., 1999. The stability of cladistic relationships between Cetacea and higher level artiodactyl taxa. Syst. Biol. 48, 6-20.
-
(1999)
Syst. Biol.
, vol.48
, pp. 6-20
-
-
Gatesy, J.1
Milinkovitch, M.2
Waddell, V.3
Stanhope, M.4
-
25
-
-
0028327335
-
Molecular evidence on primate phylogeny from DNA sequences
-
Goodman, M., Bailey, W.J., Hayasaka, K., Stanhope, M.J., Slightom, J., Czelusniak, J., 1994. Molecular evidence on primate phylogeny from DNA sequences. Am. J. Phys. Anthropol. 94, 3-24.
-
(1994)
Am. J. Phys. Anthropol.
, vol.94
, pp. 3-24
-
-
Goodman, M.1
Bailey, W.J.2
Hayasaka, K.3
Stanhope, M.J.4
Slightom, J.5
Czelusniak, J.6
-
27
-
-
0029947159
-
Phylogenetic position of cetaceans relative to artiodactyls: Reanalysis of mitochondrial and nuclear sequences
-
Hasegawa, M., Adachi, J., 1996. Phylogenetic position of cetaceans relative to artiodactyls: Reanalysis of mitochondrial and nuclear sequences. Mol. Biol. Evol. 13, 710-717.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 710-717
-
-
Hasegawa, M.1
Adachi, J.2
-
28
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., Kishino, H., Yano, T., 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 21, 160-174.
-
(1985)
J. Mol. Evol.
, vol.21
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
29
-
-
0000084234
-
A framework for the quantitative study of evolutionary trees
-
Hendy, M.D., Penny, D., 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38, 297-309.
-
(1989)
Syst. Zool.
, vol.38
, pp. 297-309
-
-
Hendy, M.D.1
Penny, D.2
-
30
-
-
0344675456
-
A review of the shrew-moles (genus Uropsilus) of China and Burma
-
Hoffmann, R.S., 1984. A review of the shrew-moles (genus Uropsilus) of China and Burma. J. Mamm. Soc. Japan 10, 69-80.
-
(1984)
J. Mamm. Soc. Japan
, vol.10
, pp. 69-80
-
-
Hoffmann, R.S.1
-
31
-
-
0035986875
-
Rodent phylogeny and a timescale for the evolution of Glires: Evidence from an extensive taxon sampling using three nuclear genes
-
Huchon, D., Madsen, O., Sibbald, M.J., Ament, K., Stanhope, M.J., Catzeflis, F., de Jong, W.W., Douzery, E.J., 2002. Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes. Mol. Biol. Evol. 19, 1053-1065.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1053-1065
-
-
Huchon, D.1
Madsen, O.2
Sibbald, M.J.3
Ament, K.4
Stanhope, M.J.5
Catzeflis, F.6
De Jong, W.W.7
Douzery, E.J.8
-
32
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J.P., Ronquist, F., 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 8, 754-755.
-
(2001)
Bioinformatics
, vol.8
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
33
-
-
85030949491
-
-
University of California, San Diego and Uppsala University, Sweden
-
Huelsenbeck, J.P., Ronquist, F., 2002. MRBAYES 3.0b. University of California, San Diego and Uppsala University, Sweden.
-
(2002)
MRBAYES 3.0b
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
34
-
-
0039359657
-
Limitations of molecular methods for establishing the phylogeny of mammals, with special reference to the position of elephants
-
Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Springer-Verlag, New York
-
Irwin, D.M., Wilson, A.C., 1993. Limitations of molecular methods for establishing the phylogeny of mammals, with special reference to the position of elephants. In: Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Mammal Phylogeny: Placentals. Springer-Verlag, New York, pp. 257-267.
-
(1993)
Mammal Phylogeny: Placentals
, pp. 257-267
-
-
Irwin, D.M.1
Wilson, A.C.2
-
35
-
-
0036728808
-
Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution
-
Jow, H., Hudelot, C., Rattray, M., Higgs, P.G., 2002. Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution. Mol. Biol. Evol. 19, 1591-1601.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1591-1601
-
-
Jow, H.1
Hudelot, C.2
Rattray, M.3
Higgs, P.G.4
-
36
-
-
0034967880
-
Marsupials and Eutherians reunited: Genetic evidence for the Theria hypothesis of mammalian evolution
-
Killian, J.K., Buckley, T.R., Stewart, N., Munday, B.L., Jirtle, R.L., 2001. Marsupials and Eutherians reunited: genetic evidence for the Theria hypothesis of mammalian evolution. Mamm. Genome. 12, 513-517.
-
(2001)
Mamm. Genome
, vol.12
, pp. 513-517
-
-
Killian, J.K.1
Buckley, T.R.2
Stewart, N.3
Munday, B.L.4
Jirtle, R.L.5
-
37
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
-
Kishino, H., Hasegawa, M., 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29, 170-179.
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
38
-
-
0025181359
-
Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
-
Kishino, H., Miyata, T., Hasegawa, M., 1990. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 30, 151-160.
-
(1990)
J. Mol. Evol.
, vol.30
, pp. 151-160
-
-
Kishino, H.1
Miyata, T.2
Hasegawa, M.3
-
39
-
-
0027482104
-
Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics
-
Kumazawa, Y., Nishida, M., 1993. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J. Mol. Evol. 37, 380-398.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 380-398
-
-
Kumazawa, Y.1
Nishida, M.2
-
40
-
-
0035933310
-
Birth of a gene: Locus of neuronal BC200 snmRNa in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage
-
Kuryshev, V.Y., Skryabin, B.V., Kremerskothen, J., Jurka, J., Brosius, J., 2002. Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage. J. Mol. Biol. 309, 1049-1066.
-
(2002)
J. Mol. Biol.
, vol.309
, pp. 1049-1066
-
-
Kuryshev, V.Y.1
Skryabin, B.V.2
Kremerskothen, J.3
Jurka, J.4
Brosius, J.5
-
41
-
-
0037055264
-
Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires
-
Lin, Y., Waddell, P.J., Penny, D., 2002. Pika and vole mitochondrial genomes increase support for both rodent monophyly and glires. Gene 294, 119-129.
-
(2002)
Gene
, vol.294
, pp. 119-129
-
-
Lin, Y.1
Waddell, P.J.2
Penny, D.3
-
42
-
-
0033084948
-
Phylogenetic assessment of molecular and morphological data for eutherian mammals
-
Lin, F.-G.R., Miyamoto, M.M., 1999. Phylogenetic assessment of molecular and morphological data for eutherian mammals. Syst. Biol. 48, 5.
-
(1999)
Syst. Biol.
, vol.48
, pp. 5
-
-
Lin, F.-G.R.1
Miyamoto, M.M.2
-
43
-
-
0035793857
-
Molecular and morphological supertrees for eutherian (placental) mammals
-
Liu, F.G., Miyamoto, M.M., Freire, N.P., Ong, P.Q., Tennant, M.R., Young, T.S., Gugel, K.F., 2001. Molecular and morphological supertrees for eutherian (placental) mammals. Science 291, 1786-1789.
-
(2001)
Science
, vol.291
, pp. 1786-1789
-
-
Liu, F.G.1
Miyamoto, M.M.2
Freire, N.P.3
Ong, P.Q.4
Tennant, M.R.5
Young, T.S.6
Gugel, K.F.7
-
44
-
-
0029935637
-
-
Lockhart, P.J., Larkum, A.W.D., Waddell, P.J., Steel, M.A., Penny, D., 1996. Evolution of chlorophyll and bacteriochlorophyll: The problem of Science, USA 93, 1930-1934.
-
(1996)
Evolution of Chlorophyll and Bacteriochlorophyll: the Problem of Science, USA
, vol.93
, pp. 1930-1934
-
-
Lockhart, P.J.1
Larkum, A.W.D.2
Waddell, P.J.3
Steel, M.A.4
Penny, D.5
-
45
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P.J., Steel, M.A., Hendy, M.D., Penny, D., 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
46
-
-
0002825067
-
Definition and relationships of Lipotyphla
-
Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Springer-Verlag, New York
-
MacPhee, R.D.E., Novacek, M., 1993. Definition and relationships of Lipotyphla. In: Szalay, F.S., Novacek, M.J., McKenna, M.C. (Eds.), Mammal Phylogeny: Placentals. Springer-Verlag, New York, pp. 13-29.
-
(1993)
Mammal Phylogeny: Placentals
, pp. 13-29
-
-
MacPhee, R.D.E.1
Novacek, M.2
-
47
-
-
0035252569
-
Parallel adaptive radiations in two major clades of placental mammals
-
Madsen, O., Scally, M., Douady, C.J., Kao, D.J., DeBry, R.W., Adkins, R., Amrine, H.M., Stanhope, M.J., de Jong, W.W., Springer, M.S., 2001. Parallel adaptive radiations in two major clades of placental mammals. Nature 409, 610-614.
-
(2001)
Nature
, vol.409
, pp. 610-614
-
-
Madsen, O.1
Scally, M.2
Douady, C.J.3
Kao, D.J.4
DeBry, R.W.5
Adkins, R.6
Amrine, H.M.7
Stanhope, M.J.8
De Jong, W.W.9
Springer, M.S.10
-
48
-
-
0036377364
-
Molecular support for Afrotheria and the polyphyly of Lipotyphla based on analyses of the growth hormone receptor gene
-
Malia Jr., M.J., Adkins, R.M., Allard, M.W., 2002. Molecular support for Afrotheria and the polyphyly of Lipotyphla based on analyses of the growth hormone receptor gene. Mol. Phylogenet. Evol. 24, 91-101.
-
(2002)
Mol. Phylogenet. Evol.
, vol.24
, pp. 91-101
-
-
Malia Jr., M.J.1
Adkins, R.M.2
Allard, M.W.3
-
49
-
-
0002074955
-
Toward a phylogenetic classification of the Mammalia
-
Luckett, W.P., Szalay, F. (Eds.), Plenum, New York
-
McKenna, M.C., 1975. Toward a phylogenetic classification of the Mammalia. In: Luckett, W.P., Szalay, F. (Eds.), Phylogeny of the Primates: A Multidisiplinary Approach. Plenum, New York, pp. 21-46.
-
(1975)
Phylogeny of the Primates: A Multidisiplinary Approach
, pp. 21-46
-
-
McKenna, M.C.1
-
50
-
-
0034350322
-
c-myc gene sequences and the phylogeny of bats and other eutherian mammals
-
Miyamoto, M.M., Porter, C.A., Goodman, M., 2000. c-myc gene sequences and the phylogeny of bats and other eutherian mammals. Syst. Biol. 49, 501-514.
-
(2000)
Syst. Biol.
, vol.49
, pp. 501-514
-
-
Miyamoto, M.M.1
Porter, C.A.2
Goodman, M.3
-
51
-
-
0030969833
-
Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences
-
Montgelard, C., Catzeflis, F.M., Douzery, E., 1997. Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences. Mol. Biol. Evol. 14, 550-559.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 550-559
-
-
Montgelard, C.1
Catzeflis, F.M.2
Douzery, E.3
-
53
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy, W.J., Eizirik, E., Johnson, W.E., Zhang, Y.P., Ryder, O.A., O'Brien, S.J., 2001a. Molecular phylogenetics and the origins of placental mammals. Nature 409, 614-618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
54
-
-
0035861441
-
Resolution of the early placental mammal radiation using Bayesian phylogenetics
-
Murphy, W.J., Eizirik, E.D., O'Brien, S.J., Madsen, O., Scally, M., Douady, C.J., Teeling, E., Ryder, O.A., Stanhope, M.J., de Jong, W.W., Springer, M.S., 2001b. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science 294, 2348-2351.
-
(2001)
Science
, vol.294
, pp. 2348-2351
-
-
Murphy, W.J.1
Eizirik, E.D.2
O'Brien, S.J.3
Madsen, O.4
Scally, M.5
Douady, C.J.6
Teeling, E.7
Ryder, O.A.8
Stanhope, M.J.9
De Jong, W.W.10
Springer, M.S.11
-
55
-
-
0026557719
-
Mammalian phylogeny: Shaking the tree
-
Novacek, M.J., 1992. Mammalian phylogeny: shaking the tree. Nature 356, 121-125.
-
(1992)
Nature
, vol.356
, pp. 121-125
-
-
Novacek, M.J.1
-
57
-
-
0033569255
-
Comparative genomics: Mammalian radiations, wall chart
-
O'Brien, S.J., Eisenberg, J.F., Miyamoto, M., Hedges, S.B., Kumar, S., Wilson, D.E., Menotti-Raymond, M., Murphy, W.J., Nash, W.G., et al., 1999. Comparative genomics: Mammalian radiations, wall chart. Science 286, 463-478.
-
(1999)
Science
, vol.286
, pp. 463-478
-
-
O'Brien, S.J.1
Eisenberg, J.F.2
Miyamoto, M.3
Hedges, S.B.4
Kumar, S.5
Wilson, D.E.6
Menotti-Raymond, M.7
Murphy, W.J.8
Nash, W.G.9
-
59
-
-
0034106726
-
Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters
-
Ota, R., Waddell, P.J., Hasegawa, M., Shimodaira, H., Kishino, H., 2000. Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters. Mol. Biol. Evol. 17, 798-803.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 798-803
-
-
Ota, R.1
Waddell, P.J.2
Hasegawa, M.3
Shimodaira, H.4
Kishino, H.5
-
60
-
-
0031554287
-
The platypus put in its place
-
Penny, D., Hasegawa, M., 1997. The platypus put in its place. Nature 387, 549-550.
-
(1997)
Nature
, vol.387
, pp. 549-550
-
-
Penny, D.1
Hasegawa, M.2
-
61
-
-
0019951634
-
Testing the theory of evolution by comparing phylogenetic trees constructed from five different protein sequences
-
Penny, D., Foulds, L.R., Hendy, M.D., 1982. Testing the theory of evolution by comparing phylogenetic trees constructed from five different protein sequences. Nature 297, 197-200.
-
(1982)
Nature
, vol.297
, pp. 197-200
-
-
Penny, D.1
Foulds, L.R.2
Hendy, M.D.3
-
62
-
-
0028947659
-
Evidence on primate phylogeny from ε-globin gene sequences and flanking regions
-
Porter, C.A., Sampaio, I., Schneider, H., Schneider, M.P., Czelusniak, J., Goodman, M.J., 1995. Evidence on primate phylogeny from ε-globin gene sequences and flanking regions. J. Mol. Evol. 40, 30-55.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 30-55
-
-
Porter, C.A.1
Sampaio, I.2
Schneider, H.3
Schneider, M.P.4
Czelusniak, J.5
Goodman, M.J.6
-
63
-
-
0026808975
-
Heterogeneity in the substitution process of amino acid sites of proteins coded for by mitochondrial DNA
-
Reeves, J.H., 1992. Heterogeneity in the substitution process of amino acid sites of proteins coded for by mitochondrial DNA. J. Mol. Evol. 35, 17-31.
-
(1992)
J. Mol. Evol.
, vol.35
, pp. 17-31
-
-
Reeves, J.H.1
-
64
-
-
0014623982
-
Pinniped phylogeny
-
Sarich, V.M., 1969. Pinniped phylogeny. Syst. Zool. 18, 416-422.
-
(1969)
Syst. Zool.
, vol.18
, pp. 416-422
-
-
Sarich, V.M.1
-
65
-
-
0000275496
-
Molecular evidence for the major clades of placental mammals
-
Scally, M., Madsen, O., Douady, C.J., de Jong, W.W., Stanhope, M.J., Springer, M.S., 2001. Molecular evidence for the major clades of placental mammals. J. Mamm. Evol. 8, 239-277.
-
(2001)
J. Mamm. Evol.
, vol.8
, pp. 239-277
-
-
Scally, M.1
Madsen, O.2
Douady, C.J.3
De Jong, W.W.4
Stanhope, M.J.5
Springer, M.S.6
-
66
-
-
0035108258
-
SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates
-
Schmitz, J., Ohme, M., Zischler, H., 2001. SINE insertions in cladistic analyses and the phylogenetic affiliations of Tarsius bancanus to other primates. Genetics 157, 777-784.
-
(2001)
Genetics
, vol.157
, pp. 777-784
-
-
Schmitz, J.1
Ohme, M.2
Zischler, H.3
-
67
-
-
84890829458
-
Modified sequentially rejective multiple test procedures
-
Shaffer, J.P., 1986. Modified sequentially rejective multiple test procedures. J. Amer. Statist. Assoc. 76, 826-831.
-
(1986)
J. Amer. Statist. Assoc.
, vol.76
, pp. 826-831
-
-
Shaffer, J.P.1
-
68
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira, H., Hasegawa, M., 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
69
-
-
0032085453
-
Higher taxonomic relationships among extant mammals based on morphology, with selected comparisons of results from molecular data
-
Shoshani, J., McKenna, M.C., 1998. Higher taxonomic relationships among extant mammals based on morphology, with selected comparisons of results from molecular data. Mol. Phyl. Evol. 9, 572-584.
-
(1998)
Mol. Phyl. Evol.
, vol.9
, pp. 572-584
-
-
Shoshani, J.1
McKenna, M.C.2
-
70
-
-
0002015259
-
The principles of classification and the classification of mammals
-
Simpson, G.G., 1945. The principles of classification and the classification of mammals. Bull. Amer. Mus. Nat. Hist. 85, 1-350.
-
(1945)
Bull. Amer. Mus. Nat. Hist.
, vol.85
, pp. 1-350
-
-
Simpson, G.G.1
-
71
-
-
0033161156
-
Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates
-
Sorenson, M.D., Ast, J.C., Dimcheff, D.E., Yuri, T., Mindell, D.P., 1999. Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol. Phyl. Evol. 12, 105-114.
-
(1999)
Mol. Phyl. Evol.
, vol.12
, pp. 105-114
-
-
Sorenson, M.D.1
Ast, J.C.2
Dimcheff, D.E.3
Yuri, T.4
Mindell, D.P.5
-
72
-
-
0033085041
-
Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition
-
Springer, M.S., Amrine, H.M., Burk, A., Stanhope, M.J., 1999. Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition. Syst. Biol. 48, 65-75.
-
(1999)
Syst. Biol.
, vol.48
, pp. 65-75
-
-
Springer, M.S.1
Amrine, H.M.2
Burk, A.3
Stanhope, M.J.4
-
73
-
-
0030837454
-
Endemic African mammals shake the phylogenetic tree
-
Springer, M.S., Cleven, G.C., Madsen, O., de Jong, W.W., Waddell, V.G., Amrine, H.M., Stanhope, J.M., 1997. Endemic African mammals shake the phylogenetic tree. Nature 388, 61-64.
-
(1997)
Nature
, vol.388
, pp. 61-64
-
-
Springer, M.S.1
Cleven, G.C.2
Madsen, O.3
De Jong, W.W.4
Waddell, V.G.5
Amrine, H.M.6
Stanhope, J.M.7
-
74
-
-
0035793899
-
Phylogenetics. Which mammalian supertree to bark up?
-
Springer, M.S., de Jong, W.W., 2001. Phylogenetics. Which mammalian supertree to bark up? Science 291, 1709-1711.
-
(2001)
Science
, vol.291
, pp. 1709-1711
-
-
Springer, M.S.1
De Jong, W.W.2
-
75
-
-
0026870120
-
A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly
-
Stanhope, M.J., Czelusniak, J., Si, J.S., Nickerson, J., Goodman, M., 1992. A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol. Phylogenet. Evol. 1, 148-160.
-
(1992)
Mol. Phylogenet. Evol.
, vol.1
, pp. 148-160
-
-
Stanhope, M.J.1
Czelusniak, J.2
Si, J.S.3
Nickerson, J.4
Goodman, M.5
-
76
-
-
0032544017
-
Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals
-
Stanhope, M.J., Waddell, V.G., Madsen, O., de Jong, W., Hedges, C.B., Cleven, G.C., Kao, D., Springer, S.M., 1998. Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals. Proc. Natl. Acad. Sci. USA 95, 9967-9972.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9967-9972
-
-
Stanhope, M.J.1
Waddell, V.G.2
Madsen, O.3
De Jong, W.4
Hedges, C.B.5
Cleven, G.C.6
Kao, D.7
Springer, S.M.8
-
77
-
-
0002618746
-
Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics
-
Sullivan, J., Swofford, D.L., 1997. Are guinea pigs rodents. The importance of adequate models in molecular phylogenetics. J. Mammal. Evol. 4, 77-86.
-
(1997)
J. Mammal. Evol.
, vol.4
, pp. 77-86
-
-
Sullivan, J.1
Swofford, D.L.2
-
79
-
-
0001336205
-
Phylogenetic inference
-
Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Sinauer Associates, Sunderland, Massachusetts
-
Swofford, D.L., Olsen, G.J., Waddell, P.J., Hillis, D.M., 1996. Phylogenetic inference. In: Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Molecular Systematics, 2nd ed. Sinauer Associates, Sunderland, Massachusetts, pp. 407-514.
-
(1996)
Molecular Systematics, 2nd Ed.
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
80
-
-
0037022361
-
Microbat paraphyly and the convergent evolution of a key innovation in old World rhinolophoid microbats
-
Teeling, E.C., Madsen, O., Van den Bussche, R.A., de Jong, W.W., Stanhope, M.J., Springer, M.S., 2002. Microbat paraphyly and the convergent evolution of a key innovation in old World rhinolophoid microbats. Proc. Natl. Acad. Sci. USA 99, 1431-1436.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1431-1436
-
-
Teeling, E.C.1
Madsen, O.2
Van Den Bussche, R.A.3
De Jong, W.W.4
Stanhope, M.J.5
Springer, M.S.6
-
81
-
-
0034642538
-
Molecular evidence regarding the origin of echolocation and flight in bats
-
Teeling, E.C., Scally, M., Kao, D.J., Romagnoli, M.L., Springer, M.S., Stanhope, M.J., 2000. Molecular evidence regarding the origin of echolocation and flight in bats. Nature 403, 188-192.
-
(2000)
Nature
, vol.403
, pp. 188-192
-
-
Teeling, E.C.1
Scally, M.2
Kao, D.J.3
Romagnoli, M.L.4
Springer, M.S.5
Stanhope, M.J.6
-
82
-
-
0031149251
-
Links between maximum likelihood and maximum parsimony under a simple model of site substitution
-
Tuffley, C., Steel, M.A., 1997. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull. Math. Biol. 59, 581-607.
-
(1997)
Bull. Math. Biol.
, vol.59
, pp. 581-607
-
-
Tuffley, C.1
Steel, M.A.2
-
83
-
-
0033085003
-
Assessing the Cretaceous superordinal divergence times within birds and placental mammals using whole mitochondrial protein sequences and an extended statistical framework
-
Waddell, P.J., Cao, Y., Hasegawa, M., Mindell, D., 1999a. Assessing the Cretaceous superordinal divergence times within birds and placental mammals using whole mitochondrial protein sequences and an extended statistical framework. Syst. Biol. 48, 119-137.
-
(1999)
Syst. Biol.
, vol.48
, pp. 119-137
-
-
Waddell, P.J.1
Cao, Y.2
Hasegawa, M.3
Mindell, D.4
-
84
-
-
0033084970
-
Using novel phylogenetic methods to evaluate mammalian mtDNA, including AA invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the position of hedgehog, armadillo, and elephant
-
Waddell, P.J., Cao, Y., Hauf, J., Hasegawa, M., 1999b. Using novel phylogenetic methods to evaluate mammalian mtDNA, including AA invariant sites-LogDet plus site stripping, to detect internal conflicts in the data, with special reference to the position of hedgehog, armadillo, and elephant. Syst. Biol. 48, 31-53.
-
(1999)
Syst. Biol.
, vol.48
, pp. 31-53
-
-
Waddell, P.J.1
Cao, Y.2
Hauf, J.3
Hasegawa, M.4
-
85
-
-
0033635534
-
Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests
-
Waddell, P.J., Kishino, H., Ota, R., 2000. Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests. Mol. Biol. Evol. 17, 1988-1992.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1988-1992
-
-
Waddell, P.J.1
Kishino, H.2
Ota, R.3
-
86
-
-
0035752767
-
A phylogenetic foundation for comparative mammalian genomics
-
Waddell, P.J., Kishino, H., Ota, R., 2001. A phylogenetic foundation for comparative mammalian genomics. Genome Inform. 12, 141-154.
-
(2001)
Genome Inform.
, vol.12
, pp. 141-154
-
-
Waddell, P.J.1
Kishino, H.2
Ota, R.3
-
87
-
-
0142089657
-
Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data
-
Waddell, P.J., Kishino, H., Ota, R., 2002. Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data. Genome Inform. 13, 82-92.
-
(2002)
Genome Inform.
, vol.13
, pp. 82-92
-
-
Waddell, P.J.1
Kishino, H.2
Ota, R.3
-
88
-
-
0033085002
-
Progress in resolving the interordinal relationships of placental mammals
-
Waddell, P.J., Okada, N., Hasegawa, M., 1999c. Progress in resolving the interordinal relationships of placental mammals. Syst. Biol. 48, 1-5.
-
(1999)
Syst. Biol.
, vol.48
, pp. 1-5
-
-
Waddell, P.J.1
Okada, N.2
Hasegawa, M.3
-
89
-
-
0002574561
-
Evolutionary trees of apes and humans from DNA sequences
-
Lock, A.J., Peters, C.R. (Eds.), Oxford University Press, Oxford, England
-
Waddell, P.J., Penny, D., 1996. Evolutionary trees of apes and humans from DNA sequences. In: Lock, A.J., Peters, C.R. (Eds.), Handbook of Human Symbolic Evolution. Oxford University Press, Oxford, England, pp. 53-73.
-
(1996)
Handbook of Human Symbolic Evolution
, pp. 53-73
-
-
Waddell, P.J.1
Penny, D.2
-
90
-
-
0031297695
-
General time reversible distances with unequal rates across sites: Mixing Γ and inverse Gaussian distributions with invariant sites
-
Waddell, P.J., Steel, M.A., 1997. General time reversible distances with unequal rates across sites: mixing Γ and inverse Gaussian distributions with invariant sites. Mol. Phyl. Evol. 8, 398-414.
-
(1997)
Mol. Phyl. Evol.
, vol.8
, pp. 398-414
-
-
Waddell, P.J.1
Steel, M.A.2
-
91
-
-
0033070455
-
Phylogenetic affinities of tarsier in the context of primate Alu repeats
-
Zietkiewicz, E., Richer, C., Labuda, D., 1999. Phylogenetic affinities of tarsier in the context of primate Alu repeats. Mol. Phylogenet. Evol. 11, 77-83.
-
(1999)
Mol. Phylogenet. Evol.
, vol.11
, pp. 77-83
-
-
Zietkiewicz, E.1
Richer, C.2
Labuda, D.3
|