-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
2
-
-
13244259253
-
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method
-
Bagos,P.G. et al. (2005) Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinformatics, 6:7.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 7
-
-
Bagos, P.G.1
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M. et al. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-42.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
4
-
-
21744454309
-
Transmembrane helix prediction: A comparative evaluation and analysis
-
Cuthbertson,J.M. et al. (2005) Transmembrane helix prediction: A comparative evaluation and analysis. Protein Eng. Des. Sel., 18 295-308.
-
(2005)
Protein Eng. Des. Sel
, vol.18
, pp. 295-308
-
-
Cuthbertson, J.M.1
-
5
-
-
64549163502
-
-
Available at, last accessed date 15 February, 2008
-
DeLano,W.L. (2002) The PyMOL molecular graphics system. Available at http://www.pymol.org (last accessed date 15 February, 2008).
-
(2002)
-
-
DeLano, W.L.1
-
6
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar,R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
7
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh,A. et al. (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol., 305, 567-580.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
-
8
-
-
33644861214
-
OPM: Orientations of proteins in membranes database
-
Lomize,M.A. et al. (2006) OPM: Orientations of proteins in membranes database. Bioinformatics, 22, 623-625.
-
(2006)
Bioinformatics
, vol.22
, pp. 623-625
-
-
Lomize, M.A.1
-
9
-
-
4243671284
-
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins
-
Martelli,P.L. et al. (2002) A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. Bioinformatics, 18 (Suppl. 1), S46-S53.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Martelli, P.L.1
-
10
-
-
41149127245
-
Vertebrate membrane proteins: Structure, function, and insights from biophysical approaches
-
Müller,D.J. et al. (2008) Vertebrate membrane proteins: structure, function, and insights from biophysical approaches. Pharmacol. Rev., 60, 43-78.
-
(2008)
Pharmacol. Rev
, vol.60
, pp. 43-78
-
-
Müller, D.J.1
-
11
-
-
0036839162
-
MAMMOTH (Matching Molecular Models Obtained from Theory): An automated method for model comparison
-
Ortiz,A.R. et al. (2002) MAMMOTH (Matching Molecular Models Obtained from Theory): An automated method for model comparison. Protein Sci., 11, 2606-2621.
-
(2002)
Protein Sci
, vol.11
, pp. 2606-2621
-
-
Ortiz, A.R.1
-
12
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson,W.R. (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol., 183, 63-98.
-
(1990)
Methods Enzymol
, vol.183
, pp. 63-98
-
-
Pearson, W.R.1
-
13
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost,B. (1999) Twilight zone of protein sequence alignments. Protein Eng., 12, 85-94.
-
(1999)
Protein Eng
, vol.12
, pp. 85-94
-
-
Rost, B.1
-
14
-
-
41449119304
-
Coarse-grained MD simulations of membrane protein-bilayer self-assembly
-
Scott,K.A. et al. (2008) Coarse-grained MD simulations of membrane protein-bilayer self-assembly. Structure, 16, 621-630.
-
(2008)
Structure
, vol.16
, pp. 621-630
-
-
Scott, K.A.1
|