-
1
-
-
29344432096
-
Sequence context analysis in the mouse genome: single nucleotide polymorphisms and CpG island sequences
-
Zhao Z., and Zhang F. Sequence context analysis in the mouse genome: single nucleotide polymorphisms and CpG island sequences. Genomics 87 (2006) 68-74
-
(2006)
Genomics
, vol.87
, pp. 68-74
-
-
Zhao, Z.1
Zhang, F.2
-
2
-
-
47149116702
-
CpG island density and its correlations with genomic features in mammalian genomes
-
Han L., Su B., Li W.H., and Zhao Z. CpG island density and its correlations with genomic features in mammalian genomes. Genome Biol. 9 (2008) R79
-
(2008)
Genome Biol.
, vol.9
-
-
Han, L.1
Su, B.2
Li, W.H.3
Zhao, Z.4
-
3
-
-
0027893006
-
Evidence for erosion of mouse CpG islands during mammalian evolution
-
Matsuo K., Clay O., Takahashi T., Silke J., and Schaffner W. Evidence for erosion of mouse CpG islands during mammalian evolution. Somat. Cell. Mol. Genet. 19 (1993) 543-555
-
(1993)
Somat. Cell. Mol. Genet.
, vol.19
, pp. 543-555
-
-
Matsuo, K.1
Clay, O.2
Takahashi, T.3
Silke, J.4
Schaffner, W.5
-
4
-
-
0042329754
-
Structure, function and evolution of CpG island promoters
-
Antequera F. Structure, function and evolution of CpG island promoters. Cell. Mol. Life Sci. 60 (2003) 1647-1658
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 1647-1658
-
-
Antequera, F.1
-
5
-
-
31444437920
-
Epigenetics provides a new generation of oncogenes and tumour-suppressor genes
-
Esteller M. Epigenetics provides a new generation of oncogenes and tumour-suppressor genes. Br. J. Cancer 94 (2006) 179-183
-
(2006)
Br. J. Cancer
, vol.94
, pp. 179-183
-
-
Esteller, M.1
-
6
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
Weber M., Hellmann I., Stadler M.B., Ramos L., Paabo S., Rebhan M., and Schubeler D. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet. 39 (2007) 457-466
-
(2007)
Nat. Genet.
, vol.39
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Paabo, S.5
Rebhan, M.6
Schubeler, D.7
-
7
-
-
1242296842
-
A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q
-
Yamada Y., Watanabe H., Miura F., Soejima H., Uchiyama M., Iwasaka T., Mukai T., Sakaki Y., and Ito T. A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q. Genome Res. 14 (2004) 247-266
-
(2004)
Genome Res.
, vol.14
, pp. 247-266
-
-
Yamada, Y.1
Watanabe, H.2
Miura, F.3
Soejima, H.4
Uchiyama, M.5
Iwasaka, T.6
Mukai, T.7
Sakaki, Y.8
Ito, T.9
-
8
-
-
33751505540
-
DNA methylation profiling of human chromosomes 6, 20 and 22
-
Eckhardt F., Lewin J., Cortese R., Rakyan V.K., Attwood J., Burger M., Burton J., Cox T.V., Davies R., Down T.A., et al. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat. Genet. 38 (2006) 1378-1385
-
(2006)
Nat. Genet.
, vol.38
, pp. 1378-1385
-
-
Eckhardt, F.1
Lewin, J.2
Cortese, R.3
Rakyan, V.K.4
Attwood, J.5
Burger, M.6
Burton, J.7
Cox, T.V.8
Davies, R.9
Down, T.A.10
-
9
-
-
38949212693
-
A novel CpG island set identifies tissue-specific methylation at developmental gene loci
-
Illingworth R., Kerr A., Desousa D., Jorgensen H., Ellis P., Stalker J., Jackson D., Clee C., Plumb R., Rogers J., et al. A novel CpG island set identifies tissue-specific methylation at developmental gene loci. PLoS Biol. 6 (2008) e22
-
(2008)
PLoS Biol.
, vol.6
-
-
Illingworth, R.1
Kerr, A.2
Desousa, D.3
Jorgensen, H.4
Ellis, P.5
Stalker, J.6
Jackson, D.7
Clee, C.8
Plumb, R.9
Rogers, J.10
-
10
-
-
0023216891
-
CpG islands in vertebrate genomes
-
Gardiner-Garden M., and Frommer M. CpG islands in vertebrate genomes. J. Mol. Biol. 196 (1987) 261-282
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 261-282
-
-
Gardiner-Garden, M.1
Frommer, M.2
-
11
-
-
0037133565
-
Comprehensive analysis of CpG islands in human chromosomes 21 and 22
-
Takai D., and Jones P.A. Comprehensive analysis of CpG islands in human chromosomes 21 and 22. Proc. Natl. Acad. Sci. USA 99 (2002) 3740-3745
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3740-3745
-
-
Takai, D.1
Jones, P.A.2
-
12
-
-
0035999991
-
CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
-
Ponger L., and Mouchiroud D. CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences. Bioinformatics 18 (2002) 631-633
-
(2002)
Bioinformatics
, vol.18
, pp. 631-633
-
-
Ponger, L.1
Mouchiroud, D.2
-
13
-
-
33750329496
-
CpGcluster: a distance-based algorithm for CpG-island detection
-
Hackenberg M., Previti C., Luque-Escamilla P.L., Carpena P., Martinez-Aroza J., and Oliver J.L. CpGcluster: a distance-based algorithm for CpG-island detection. BMC Bioinformatics 7 (2006) 446
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 446
-
-
Hackenberg, M.1
Previti, C.2
Luque-Escamilla, P.L.3
Carpena, P.4
Martinez-Aroza, J.5
Oliver, J.L.6
-
14
-
-
36749017978
-
CG dinucleotide clustering is a species-specific property of the genome
-
Glass J.L., Thompson R.F., Khulan B., Figueroa M.E., Olivier E.N., Oakley E.J., Van Zant G., Bouhassira E.E., Melnick A., Golden A., et al. CG dinucleotide clustering is a species-specific property of the genome. Nucleic Acids Res. 35 (2007) 6798-6807
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 6798-6807
-
-
Glass, J.L.1
Thompson, R.F.2
Khulan, B.3
Figueroa, M.E.4
Olivier, E.N.5
Oakley, E.J.6
Van Zant, G.7
Bouhassira, E.E.8
Melnick, A.9
Golden, A.10
-
15
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., Devon K., Dewar K., Doyle M., FitzHugh W., et al. Initial sequencing and analysis of the human genome. Nature 409 (2001) 860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
16
-
-
2442684104
-
An evaluation of new criteria for CpG islands in the human genome as gene markers
-
Wang Y., and Leung F.C. An evaluation of new criteria for CpG islands in the human genome as gene markers. Bioinformatics 20 (2004) 1170-1177
-
(2004)
Bioinformatics
, vol.20
, pp. 1170-1177
-
-
Wang, Y.1
Leung, F.C.2
-
17
-
-
62249118461
-
CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?
-
Han L., and Zhao Z. CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?. BMC Bioinformatics 10 (2009) 65
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 65
-
-
Han, L.1
Zhao, Z.2
-
18
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., Feng S., Zhang X., Chen Z., Merriman B., Haudenschild C.D., Pradhan S., Nelson S.F., Pellegrini M., and Jacobsen S.E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452 (2008) 215-219
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
19
-
-
45349086923
-
Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes
-
Farthing C.R., Ficz G., Ng R.K., Chan C.F., Andrews S., Dean W., Hemberger M., and Reik W. Global mapping of DNA methylation in mouse promoters reveals epigenetic reprogramming of pluripotency genes. PLoS Genet. 4 (2008) e1000116
-
(2008)
PLoS Genet.
, vol.4
-
-
Farthing, C.R.1
Ficz, G.2
Ng, R.K.3
Chan, C.F.4
Andrews, S.5
Dean, W.6
Hemberger, M.7
Reik, W.8
-
20
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis E.R. The impact of next-generation sequencing technology on genetics. Trends Genet. 24 (2008) 133-141
-
(2008)
Trends Genet.
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
21
-
-
0142059820
-
Predicting aberrant CpG island methylation
-
Feltus F.A., Lee E.K., Costello J.F., Plass C., and Vertino P.M. Predicting aberrant CpG island methylation. Proc. Natl. Acad. Sci. USA 100 (2003) 12253-12258
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12253-12258
-
-
Feltus, F.A.1
Lee, E.K.2
Costello, J.F.3
Plass, C.4
Vertino, P.M.5
-
22
-
-
33746051706
-
Computational prediction of methylation status in human genomic sequences
-
Das R., Dimitrova N., Xuan Z., Rollins R.A., Haghighi F., Edwards J.R., Ju J., Bestor T.H., and Zhang M.Q. Computational prediction of methylation status in human genomic sequences. Proc. Natl. Acad. Sci. USA 103 (2006) 10713-10716
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 10713-10716
-
-
Das, R.1
Dimitrova, N.2
Xuan, Z.3
Rollins, R.A.4
Haghighi, F.5
Edwards, J.R.6
Ju, J.7
Bestor, T.H.8
Zhang, M.Q.9
-
23
-
-
33748711235
-
Predicting methylation status of CpG islands in the human brain
-
Fang F., Fan S., Zhang X., and Zhang M.Q. Predicting methylation status of CpG islands in the human brain. Bioinformatics 22 (2006) 2204-2209
-
(2006)
Bioinformatics
, vol.22
, pp. 2204-2209
-
-
Fang, F.1
Fan, S.2
Zhang, X.3
Zhang, M.Q.4
-
24
-
-
33645777446
-
CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure
-
Bock C., Paulsen M., Tierling S., Mikeska T., Lengauer T., and Walter J. CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure. PLoS Genet. 2 (2006) e26
-
(2006)
PLoS Genet.
, vol.2
-
-
Bock, C.1
Paulsen, M.2
Tierling, S.3
Mikeska, T.4
Lengauer, T.5
Walter, J.6
-
25
-
-
33746756014
-
Comparative isoschizomer profiling of cytosine methylation: the HELP assay
-
Khulan B., Thompson R.F., Ye K., Fazzari M.J., Suzuki M., Stasiek E., Figueroa M.E., Glass J.L., Chen Q., Montagna C., et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Res. 16 (2006) 1046-1055
-
(2006)
Genome Res.
, vol.16
, pp. 1046-1055
-
-
Khulan, B.1
Thompson, R.F.2
Ye, K.3
Fazzari, M.J.4
Suzuki, M.5
Stasiek, E.6
Figueroa, M.E.7
Glass, J.L.8
Chen, Q.9
Montagna, C.10
-
26
-
-
33846066292
-
A unique configuration of genome-wide DNA methylation patterns in the testis
-
Oakes C.C., La Salle S., Smiraglia D.J., Robaire B., and Trasler J.M. A unique configuration of genome-wide DNA methylation patterns in the testis. Proc. Natl. Acad. Sci. USA 104 (2007) 228-233
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 228-233
-
-
Oakes, C.C.1
La Salle, S.2
Smiraglia, D.J.3
Robaire, B.4
Trasler, J.M.5
-
27
-
-
42449129744
-
Cytosine methylation profiling of cancer cell lines
-
Ehrich M., Turner J., Gibbs P., Lipton L., Giovanneti M., Cantor C., and van den Boom D. Cytosine methylation profiling of cancer cell lines. Proc. Natl. Acad. Sci. USA 105 (2008) 4844-4849
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 4844-4849
-
-
Ehrich, M.1
Turner, J.2
Gibbs, P.3
Lipton, L.4
Giovanneti, M.5
Cantor, C.6
van den Boom, D.7
-
28
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A., Mikkelsen T.S., Gu H., Wernig M., Hanna J., Sivachenko A., Zhang X., Bernstein B.E., Nusbaum C., Jaffe D.B., et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454 (2008) 766-770
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
Zhang, X.7
Bernstein, B.E.8
Nusbaum, C.9
Jaffe, D.B.10
-
29
-
-
50649108994
-
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
-
Rakyan V.K., Down T.A., Thorne N.P., Flicek P., Kulesha E., Graf S., Tomazou E.M., Backdahl L., Johnson N., Herberth M., et al. An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). Genome Res. 18 (2008) 1518-1529
-
(2008)
Genome Res.
, vol.18
, pp. 1518-1529
-
-
Rakyan, V.K.1
Down, T.A.2
Thorne, N.P.3
Flicek, P.4
Kulesha, E.5
Graf, S.6
Tomazou, E.M.7
Backdahl, L.8
Johnson, N.9
Herberth, M.10
-
30
-
-
43149125426
-
Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines
-
Shann Y.J., Cheng C., Chiao C.H., Chen D.T., Li P.H., and Hsu M.T. Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines. Genome Res. 18 (2008) 791-801
-
(2008)
Genome Res.
, vol.18
, pp. 791-801
-
-
Shann, Y.J.1
Cheng, C.2
Chiao, C.H.3
Chen, D.T.4
Li, P.H.5
Hsu, M.T.6
-
31
-
-
0038444085
-
Fidelity of the methylation pattern and its variation in the genome
-
Ushijima T., Watanabe N., Okochi E., Kaneda A., Sugimura T., and Miyamoto K. Fidelity of the methylation pattern and its variation in the genome. Genome Res. 13 (2003) 868-874
-
(2003)
Genome Res.
, vol.13
, pp. 868-874
-
-
Ushijima, T.1
Watanabe, N.2
Okochi, E.3
Kaneda, A.4
Sugimura, T.5
Miyamoto, K.6
-
32
-
-
31744433660
-
Evidence for an instructive mechanism of de novo methylation in cancer cells
-
Keshet I., Schlesinger Y., Farkash S., Rand E., Hecht M., Segal E., Pikarski E., Young R.A., Niveleau A., Cedar H., et al. Evidence for an instructive mechanism of de novo methylation in cancer cells. Nat. Genet. 38 (2006) 149-153
-
(2006)
Nat. Genet.
, vol.38
, pp. 149-153
-
-
Keshet, I.1
Schlesinger, Y.2
Farkash, S.3
Rand, E.4
Hecht, M.5
Segal, E.6
Pikarski, E.7
Young, R.A.8
Niveleau, A.9
Cedar, H.10
-
33
-
-
32044455298
-
Large-scale structure of genomic methylation patterns
-
Rollins R.A., Haghighi F., Edwards J.R., Das R., Zhang M.Q., Ju J., and Bestor T.H. Large-scale structure of genomic methylation patterns. Genome Res. 16 (2006) 157-163
-
(2006)
Genome Res.
, vol.16
, pp. 157-163
-
-
Rollins, R.A.1
Haghighi, F.2
Edwards, J.R.3
Das, R.4
Zhang, M.Q.5
Ju, J.6
Bestor, T.H.7
-
34
-
-
45549096818
-
Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping
-
Bock C., Walter J., Paulsen M., and Lengauer T. Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping. Nucleic Acids Res. 36 (2008) e55
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Bock, C.1
Walter, J.2
Paulsen, M.3
Lengauer, T.4
-
35
-
-
43749098985
-
DNA methylation landscapes: provocative insights from epigenomics
-
Suzuki M.M., and Bird A. DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9 (2008) 465-476
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
|