Chip-mediated techniques: How close are we to generalised use in the infectious disease clinic?

Clinical Microbiology and Infection

Volumn 10, Issue 10, 2004, Pages 865-867

  Hervas F ^a  

^a HOSPITAL CENTRAL DE LA DEFENSA GÓMEZ ULLA   (Spain)

Author keywords

Biochip; Labchip; Microarrays; Point of care; Robotics

Indexed keywords

ANTIINFECTIVE AGENT;

ANTIBIOTIC RESISTANCE; ARTIFICIAL NEURAL NETWORK; BACTERIAL INFECTION; CLUSTER ANALYSIS; DNA MICROARRAY; EDITORIAL; ESCHERICHIA COLI; GENE EXPRESSION; GENETIC POLYMORPHISM; HELICOBACTER PYLORI; HUMAN; MEDICAL RESEARCH; MEDICAL TECHNOLOGY; MYCOBACTERIUM TUBERCULOSIS; PRIORITY JOURNAL; ROBOTICS; STAPHYLOCOCCUS AUREUS; STREPTOCOCCUS PNEUMONIAE; VIRUS INFECTION;

EID: 6444233388     PISSN: 1198743X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2004.00787.x     Document Type: Editorial

References (24)

1. Heller MJ. DNA microarray technology: devices, systems and applications. Ann Rev Biomed Eng 2002; 4: 129-153.
2. Bednar M. DNA microarray technology and application. Med Sci Monit 2000; 6: 796-800.
3. Marton MJ, De Risi JL, Bennett HA et al. Drug target validation and identification of secondary drug target effects using DNA microarrays. Nat Med 1998; 4: 1293-1301.
4. Fodor SP, Rava RP, Huang XC, Pease AC, Holmes CP, Adams CL. Multiplexed biochemical assays with biological chips. Nature 1993; 364: 555-556.
5. Berry MJ, Linoff G. Data mining techniques for marketing, sales and customer support. New York: Wiley, 1997.
6. Voge W, Nagel D. Cluster analysis in diagnosis. Clin Chem 1992; 38: 182-198.
7. Zhang L. Structural and functional quantization of vagueness. Fuzzy Sets Systems 1993; 55: 51-60.
8. Langton GC. Artificial life. In: Langton GC, ed. SFI studies in the science complexity, vol. VI. Redwood City, CA: Addison-Wesley, 1989; 147.
9. Horak CE, Snyder M. Global analysis of gene expression in yeast. Funct Integr Genomics 2002; 2: 171-180.
10. Schoolnik GK. Microarray analysis of bacterial pathogenicity. Adv Microb Physiol 2002; 46: 1-45.
11. Fitzgerald JR, Musser JM. Evolutionary genomics in pathogenic bacteria. Trends Microbiol 2001; 9: 547-553.
12. Kato-Maeda M, Gao Q, Small PM. Microarray analysis of pathogens and their interaction with hosts. Cell Microbiol 2001; 3: 713-719.
13. Wilson M, De Risi J, Kristensen HH et al. Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization. Proc Natl Acad Sci USA 1999; 96: 12833-12838.
14. Kivi M, Liu X, Raychaudhuri S, Alman RB, Small PM. Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis. J Clin Microbiol 2002; 40: 2192-2198.
15. Hackenback R, Balmelle N, Weber B, Gardes C, Keck W, de Saizieu A. Mosaic genes and mosaic chromosomes: intra and interspecies genomic variation of Streptococcus pneumoniae. Infect Immun 2001; 69: 2477-2486.
16. Bjorkholm B, Lundin A, Sillen A et al. Comparison of genetic divergence and fitness between two subclones of Helicobacter pylori. Infect Immun 2001; 69: 7832-7838.
17. Moxon R, Rappuoli R. Bacterial pathogen genomics and vaccines. Br Med Bull 2002; 62: 45-58.
18. Mezzasoma L, Bacarese-Hamilton T, Di Cristina M, Rossi R, Bistoni F, Crisanti A. Antigen microarrays for serodiagnosis of infectious diseases. Clin Chem 2002; 48: 121-130.
19. Mendoza LG, McQuary P, Mongan A, Gangadharan R, Brignac S, Eggers M. High-throughput microarray-based enzyme-linked immunosorbent assay (ELISA). Biotechniques 1999; 27: 778-788.
20. Zhang Y, Amzel LM. Tuberculosis drug targets. Curr Drug Targets 2002; 3: 131-154.
21. Schallig HD, Oskam L. Molecular biological applications in the diagnosis and control of leishmaniasis and parasite identification. Trop Med Int Health 2002; 7: 641-651.
22. Petri WA. Pathogenesis of amebiasis. Curr Opin Microbiol 2002; 5: 443-447.
23. Kellam P. Post-genomic virology: the impact of bioinformatics, microarrays and proteomics on investigating host and pathogen interactions. Rev Med Virol 2001; 11: 313-329.
24. Liu XS, Brutlag DL, Liu JS. An algorithm for finding protein DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat Biotechnol 2002; 20: 835-839.