A novel double-stranded RNA virus detected in Primula malacoides is a plant-isolated partitivirus closely related to partitivirus infecting fungal species

Archives of Virology

Volumn 154, Issue 4, 2009, Pages 565-572

  Li, Liqiang ^a   Tian, Qinghua ^a   Du, Zhiyou ^a   Duns, Greg J ^a   Chen, Jishuang ^a  

^a ZHEJIANG SCI TECH UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FUNGUS; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; PRIMULACEAE; RNA VIRUS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; ULTRASTRUCTURE; VIRION; VIROLOGY;

AMINO ACID SEQUENCE; BASE SEQUENCE; FUNGI; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PRIMULA; RNA VIRUSES; RNA, DOUBLE-STRANDED; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRION;

FUNGI; MIRIDAE; PARTITIVIRUS; PRIMULA MALACOIDES; PRIMULACEAE; RNA VIRUSES;

EID: 64249154618     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-009-0342-8     Document Type: Article

References (45)

1. MA Abou-Elnasr AT Jones MA Mayo 1985 Detection of dsRNA in particles of Vicia cryptic virus and in Vicia faba tissues and protoplasts J Gen Virol 66 2453 2460
2. SF Altschul W Gish W Miller EW Myers DJ Lipman 1990 Basic local alignment search tool J Mol Biol 215 403 410
3. JF Antoniw HJM Linthorst RF White JF Bol 1986 Molecular cloning of the double-stranded RNA of Beet cryptic viruses J Gen Virol 67 2047 2051
4. R Blawid D Stephan E Maiss 2007 Molecular characterization and detection of Vicia cryptic virus in different Vicia faba cultivars Arch Virol 152 1477 1488
5. G Boccardo RG Milne E Luisoni V Lisa GP Accotto 1985 Three seedborne cryptic viruses containing double-stranded RNA isolated from white clover Virology 147 29 40
6. G Boccardo V Lisa E Luisoni RG Milne 1987 Cryptic plant viruses Adv Virus Res 32 171 214
7. JA Bruenn 1993 A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses Nucleic Acids Res 21 5667 5669
8. JA Bruenn 2003 A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases Nucleic Acids Res 31 1821 1829
9. L Chen JS Chen L Liu X Yu S Yu TZ Fu WH Liu 2006 Complete nucleotide sequences and genome characterization of double-stranded RNA 1 and RNA 2 in the Raphanus sativus-root cv. Yipinghong Arch Virol 151 849 859
10. L Chen JS Chen H Zhang SN Chen 2006 Complete nucleotide sequences of three dsRNA segments from Raphanus sativus-root cv. Yipinghong with leaf yellow edge symptoms Arch Virol 151 2077 2083
11. P Compel I Papp M Bibo C Fekete L Hornok 1999 Genetic interrelationships and genome organization of double-stranded RNA elements of Fusarium poae Virus Genes 18 49 56
12. L Crawford T Osman F Booy R Coutts C Brasier K Buck 2006 Molecular characterization of a partitivirus from Ophiostoma Himal-ulmi Virus Genes 33 33 39
13. F Deng GJ Boland 2007 Natural occurrence of a partitivirus in the sapstaining fungus Ceratocystis resinifera Can J Plant Pathol 29 182 189
14. JA Dodds TJ Morris RL Jordan 1984 Plant viral double-stranded RNA Ann Rev phytopathol 22 151 168
15. SA Ghabrial 1998 Origin, adaptation and evolutionary pathways of fungal viruses Virus Genes 16 119 131
16. Ghabrial SA, Buck K, Hillman B, Milne R (2005) Partitiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball AL (eds) Eight report of the international committee on taxonomy of viruses. Elsevier, Amsterdam, pp 581-590
17. T Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98
18. ICTVdB Management (2006) 00.057.0.81.074. Primula mottle virus. In: Büchen-Osmond C (ed) ICTVdB-The Universal Virus Database, version 4. Columbia University, New York
19. ICTVdB Management (2006) 00.057.0.81.073. Primula mosaic virus. In: Büchen-Osmond C (ed) ICTVdB-The Universal Virus Database, version 4. Columbia University, New York
20. Ihrmark K (2001) Double-stranded RNA elements in the root rot fungus Heterobasidion annosum. Department of Forest Mycologi and Pathology Uppsala. Swedish University of Agricultural Sciences, Uppsala
21. B Kassanis RF White RD Woods 1977 Beet cryptic virus Phytopathologische Zeitschrift 90 350 360
22. Kentex RH, Cockbain HJ, Woods RD (1978) Vicia cryptic virus. Report of Rothamsted Experimental Station for 1977: 222
23. NV Khramtsov SJ Upton 2000 Association of RNA polymerase complexes of the parasitic protozoan Cryptosporidium parvum with virus-like particles: heterogeneous system J Virol 74 5788 5795
24. PR Lambden SJ Cooke EO Caul IN Clarke 1992 Cloning of noncultivatable human rotavirus by single primer amplification J Virol 66 1817 1822
25. WS Lim JH Jeong RD Jeong YB Yoo SW Yie KH Kim 2005 Complete nucleotide sequence and genome organization of a dsRNA partitivirus infecting Pleurotus ostreatus Virus Res 108 111 119
26. V Lisa G Boccardo RG Milne 1981 Double-stranded ribonucleic acid from carnation cryptic virus Virology 115 410 413
27. V Lisa E Luisoni RG Milne 1981 A possible virus cryptic in carnation Ann Appl Biol 98 431 437
28. E Luisoni RG Milne G Accotto G Boccardo 1987 Cryptic viruses in hop trefoil (Medicago lupulina) and their relationships to other cryptic viruses in legumes Intervirology 28 144 156
29. DH Mathews MD Disney JL Childs SJ Schroeder M Zuker DH Turner 2004 Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure Proc Natl Acad Sci USA 101 7287 7292
30. TJ Morris JA Dodds 1979 Isolation and analysis of double-stranded RNA from virus infected plant and fungal tissue Phytopathology 69 854 858
31. KB Nicholas HB Nicholas Jr DW Deerfield II 1997 GeneDoc: analysis and visualization of genetic variation EMBnet news 4 1 4
32. C-S Oh BI Hillman 1995 Genome organization of a partitivirus from the filamentous ascomycete Atkinsonella hypoxylon J Gen Virol 76 1461 1470
33. H Osaki K Nomura N Matsumoto Y Ohtsu 2004 Characterization of double-stranded RNA elements in the violet root rot fungus Helicobasidium mompa Mycol Res 108 635 640
34. N Salem D Golino B Falk A Rowhani 2008 Complete nucleotide sequences and genome characterization of a novel double-stranded RNA virus infecting Rosa multiflora Arch Virol 153 455 462
35. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York
36. A Sasaki M Miyanishi K Ozaki M Onoue K Yoshida 2005 Molecular characterization of a partitivirus from the plant pathogenic ascomycete Rosellinia necatrix Arch Virol 150 1069 1083
37. EE Strauss DK Lakshman SM Tavantzis 2000 Molecular characterization of the genome of a partitivirus from the basidiomycete Rhizoctonia solani J Gen Virol 81 549 555
38. A Szegô EK Tóth L Potyondi N Lukács 2005 Detection of high molecular weight dsRNA persisting in Dianthus species Acta Biologica Szegediensis 49 17 19
39. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
40. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucl Acids Res 22 4673 4680
41. TT Tuomivirta J Hantula 2005 Three unrelated viruses occur in a single isolate of Gremmeniella abietina var. abietina type A Virus Res 110 31 39
42. I Tzanetakis R Price R Martin 2008 Nucleotide sequence of the tripartite Fragaria chiloensis cryptic virus and presence of the virus in the Americas Virus Genes 36 267 272
43. A Wilm DG Higgins C Notredame 2008 R-Coffee: a method for multiple alignment of non-coding RNA Nucl Acids Res 36 e52
44. WS Xie JF Antoniw RF White RD Woods 1993 A third cryptic virus in beet (Beta vulgaris) Plant Pathol 42 465 470
45. T Yokoi S Yamashita T Hibi 2003 The nucleotide sequence and genome organization of Sclerophthora macrospora virus A Virology 311 394 399