Complete nucleotide sequences and genome characterization of a novel double-stranded RNA virus infecting Rosa multiflora

Archives of Virology

Volumn 153, Issue 3, 2008, Pages 455-462

  Salem, Nidá M ^a   Golino, Deborah A ^a   Falk, Bryce W ^a   Rowhani, Adib ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; DOUBLE STRANDED RNA; RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PLANT VIRUS; RNA VIRUS; ROSE; SEQUENCE ALIGNMENT; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; BASE SEQUENCE; DNA, COMPLEMENTARY; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; PLANT VIRUSES; RNA REPLICASE; RNA VIRUSES; RNA, DOUBLE-STRANDED; RNA, VIRAL; ROSA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

FRAGARIA CHILOENSIS CRYPTIC VIRUS; FRAGARIA X ANANASSA; PARTITIVIRIDAE; RAPHANUS SATIVUS; RAPHANUS SATIVUS CRYPTIC VIRUS 2; RNA VIRUSES; ROSA; ROSA MULTIFLORA;

EID: 39749128520     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-007-0008-3     Document Type: Article

References (38)

1. Adams MJ, Swaby AG, Jones P (1988) Confirmation of the transmission of Barley yellow mosaic virus (BaYMV) by the fungus and Polymixa graminis. Ann Appl Biol 112:133-141
2. Ahn I P, Lee YH (2001) A viral double-stranded RNA up regulates the fungal virulence of Nectria radicicola. Mol Plant Microbe Interact 14:496-507
3. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
4. Boccardo G, Candresse T (2005) Complete sequence of the RNA1 of an isolate of White clover cryptic virus 1, type species of the genus Alphacryptovirus. Arch Virol 150:399-402
5. Boccardo G, Lisa V, Luisoni E, Milne GR (1987) Cryptic plant viruses. Adv Virus Res 32:171-214
6. Bruening G (2002) Virus-dependent RNA agents. In: Maloy O, Murray T (eds) Encyclopedia of plant pathology, vol. 2. John Wiley & Sons, Inc, New York, pp 1170-1177
7. Bruenn JA (1993) A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Res 21:2667-5669
8. Chen L, Chen JS, Zhang H, Chen SN (2006a) Complete nucleotide sequences of three dsRNA segments from Raphanus sativus-root cv. Yipinghong with leaf yellow edge symptoms. Arch Virol 151:2077-2083
9. Chen L, Chen JS, Liu L, Yu X, Yu S, Fu TZ, Liu WH (2006b) Complete nucleotide sequences and genome characterization of double-stranded RNA 1 and RNA 2 in the Raphanus sativus-root cv. Yipinghong. Arch Virol 151:849-859
10. Coutts RHA, Covelli L, Di Serio F, Citir A, Acikgoz S, Hernandez C, Ragozzino A, Flores R (2004) Cherry chlorotic rusty spot and Amasya cherry diseases are associated with a complex pattern of mycoviral-like double-stranded RNAs II. Characterization of a new species in the genus Partitivirus. J Gen Virol 85:3399-3403
11. Crawford LJ, Osman TA, Booy FP, Coutts RHA, Brasier CM, Buck KW (2006) Molecular characterization of a partitivirus from Ophiostoma himal-ulmi. Virus Genes 33:33-39
12. Dodds AJ, Morris JT, Jordan LR (1984) Plant viral double-stranded RNA. Ann Rev Phytopathol 22:151-168
13. Ghabrial SA (1998) Origin, adaptation and evolutionary pathways of fungal viruses. Virus Genes 16:119-131
14. Ghabrial SA (2001) Cryptoviruses. In: Maloy O, Murray T (eds) Encyclopedia of plant pathology, vol. 1. John Wiley & Sons, Inc, New York, pp 267-269
15. Ghabrial SA, Buck KW, Hillman BI, Milne RG (2005) Family Partitiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses, San Diego, pp. 580-590
16. Gould AR, Francki RIB (1981) Immunochemical detection of dsRNA in healthy and virus-infected plants and specific detection of viral dsRNA by hybridization to labeled complementary DNA. J Virol Methods 2:277-286
17. Handley MK (1986) Identification and partial characterization of two cryptic viruses in rose by analysis of double-stranded RNA content. Ph.D. dissertation. Department of Plant Pathology, University of California, Davis, 89 pp
18. Jiang D, Ghabrial S (2004) Molecular characterization of Penicillium chrysogenum virus: reconsideration of the taxonomy of the genus Chrysovirus. J Gen Virol 85:2111-2121
19. Kim JW, Kim SY, Kim KM (2003) Genome organization and expression of the Penicillium stoloniferum virus S. Virus Genes 27:249-256
20. Kim JW, Choi EY, Kim YT (2006) Intergeneric relationship between the Aspergillus ochraceous virus F and the Penicillium stoloniferum virus S. Virus Res 120:212-215
21. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
22. Nogawa M, Kageyama T, Nakatani A, Taguchi G, Shimosaka M, Okazaki M (1996) Cloning and characterization of mycovirus double-stranded RNA from the plant pathogenic fungus, Fusarium solani f. sp. Robiniae. Biosci Biotechnol Biochem 60:784-788
23. Oh CS, Hillman BI (1995) Genome organization of a partitivirus from the filamentous ascomycete Atkinsonella hypoxylon. J Gen Virol 76:1461-1470
24. Osaki H, Kudo A, Ohtsu Y (1998) Nucleotide sequence of seed- and pollen-transmitted double stranded RNA, which encodes a putative RNA-dependent RNA polymerase, detected from Japanese pear. Biosci Biotechnol Biochem 62:2101-2106
25. Osaki H, Nomura K, Iwanami T, Kanematsu S, Okabe I, Matsumoto N, Sasaki A, Ohtsu Y (2002) Detection of a double-stranded RNA virus from a strain of the violet root rot fungus Helicobasidium mompa Tanaka. Virus Genes 25:139-145
26. Rao AS, Brakke MK (1969) Relation of soil-borne Wheat mosaic virus and its fungal vector. Phytopathology 59:581-587
27. Rong R, Rao S, Scott SW, Carner GR, Tainter FH (2002) Complete sequence of the genome of two dsRNA viruses from Discula destructiva. Virus Res 90:217-224
28. Salem N, Golino DA, Falk BW, Rowhani A (2007) Identification and partial characterization of a new luteovirus associated with rose spring dwarf disease. Plant Dis (In press)
29. Sambrook J, Russell D (2001) Molecular Cloning: a laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
30. Sasaki A, Miyanishi M, Ozaki K, Onoue M, Yoshida K (2005) Molecular characterization of a partitivirus from the plant pathogenic ascomycete Rosellinia necatrix. Arch Virol 150:1069-1083
31. Strauss EE, Lakshman DK, Tavantzis SM (2000) Molecular characterization of the genome of a partitivirus from the basidomycete Rhizoctonia solani. J Gen Virol 81:549-555
32. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTALX windows interface; flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
33. Tzanetakis IE, Martin RR (2005) Fragaria chiloensis cryptic virus: a new strawberry virus found in Fragaria chilloensis plants from Chile. Plant Dis 89:1241
34. Tuomivirta TT, Hantula J (2003) Two unrelated double-stranded RNA molecule patterns in Gremmeniella abietina type A code for putative viruses of the families Totiviridae and Partitiviridae. Arch Virol 148:2293-2305
35. Tuomivirta TT, Hantula J (2005) Three unrelated viruses occure in single isolate of Gremmeniella abietina varabietina type A. Virus Res 110:31-39
36. Valverde RA, Nameth ST, Jordan RL (1990) Analysis of double-stranded RNA for plant virus diagnosis. Plant Dis 74:255-258
37. Veliceasa D, EnÜnlÜ N, Kós PB, Köster S, Beuther E, Morgun B, Deshmukh SD, Lukacs N (2006) Searching for a new putative cryptic virus in Pinus sylvestris L. Virus Genes 32:177-186
38. Xie SW, Antoniw FJ, White FR (1993) Nucleotide sequence of beet cryptic virus 3 dsRNA2 which encodes a putative RNA-dependent RNA polymerase. J Gen Virol 74:1467-1470