Mechanisms of polar arrest of a replication fork: MicroReview

Molecular Microbiology

Volumn 72, Issue 2, 2009, Pages 279-285

  Kaplan, Daniel L ^a   Bastia, Deepak ^b  

^a VANDERBILT UNIVERSITY   (United States)

^b MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FORK HELICASE; HELICASE; UNCLASSIFIED DRUG;

BACILLUS SUBTILIS; CELL CYCLE ARREST; DNA REPLICATION; ESCHERICHIA COLI; EUKARYOTE; GENE LOCUS; IN VIVO STUDY; MATING TYPE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN PROTEIN INTERACTION; REVIEW;

BACILLUS SUBTILIS; DNA REPLICATION; DNA, BACTERIAL; DNAB HELICASES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; NUCLEIC ACID DENATURATION; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES; TERMINATOR REGIONS, GENETIC;

BACILLUS SUBTILIS; ESCHERICHIA COLI;

EID: 64149106045     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2009.06656.x     Document Type: Review

References (35)

1. Andersen, P., Griffiths, A., Duggin, I. Wake, R. (2000) Functional specificity of the replication fork-arrest complexes of Bacillus subtilis and Escherichia coli: significant specificity for Tus-Ter functioning in E. coli. Mol Microbiol 36 : 1327 1335.
2. Bastia, D. Mohanty, B. (2006) Termination of DNA Replication. In DNA Replication and Human Disease. DePamphilis, M. (ed.). Cold Spring Harbor, NY : Cold Spring Harbor Laboratory Press, pp. 155 174.
3. Bastia, D., Zzaman, S., Krings, G., Saxena, M., Peng, X. Greenberg, M. (2008) Replication termination mechanism as revealed by Tus-mediated polar arrest of a sliding helicase. Proc Natl Acad Sci USA 105 : 12831 12836.
4. Bidnenko, V., Lestini, R. Michel, B. (2006) The Escherichia coli UvrD helicase is essential for Tus removal during recombination-dependent replication restart from Ter sites. Mol Microbiol 62 : 382 396.
5. Biswas, S. Bastia, D. (2008) Mechanistic insights into replication termination as revealed by investigations of the Reb1-Ter3 complex of Schizosaccharomyces pombe. Mol Cell Biol 28 : 6844 6857.
6. Bussiere, D., Bastia, D. White, S. (1995) Crystal structure of the replication terminator protein from B. subtilis at 2.6 A. Cell 80 : 651 660.
7. Calzada, A., Hodgson, B., Kanemaki, M., Bueno, A. Labib, K. (2005) Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork. Genes Dev 19 : 1905 1919.
8. Codlin, S. Dalgaard, J. (2003) Complex mechanism of site-specific DNA replication termination in fission yeast. EMBO J 22 : 3431 3440.
9. Coskun-Ari, F.F. Hill, T.M. (1997) Sequence-specific interactions in the Tus-Ter complex and the effect of base pair substitutions on arrrest of DNA replication in Escherichia coli. J Biol Chem 272 : 26448 26456.
10. Dalgaard, J. Klar, A. (2001) A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes Dev 15 : 2060 2068.
11. Duggin, I. (2006) DNA replication fork arrest by the Bacillus subtilis RTP-DNA complex involves a mechanism that is independent of the affinity of RTP-DNA binding. J Mol Biol 361 : 1 6.
12. Duggin, I., Matthews, J., Dixon, N., Wake, R. Mackay, J. (2005) A complex mechanism determines polarity of DNA replication fork arrest by the replication terminator complex of Bacillus subtilis. J Biol Chem 280 : 13105 13113.
13. Eydmann, T., Sommariva, E., Inagawa, T., Mian, S., Klar, A. Dalgaard, J. (2008) Rtf1-mediated eukaryotic site-specific replication termination. Genetics 180 : 27 39.
14. Gautam, A., Mulugu, S., Alexander, K. Bastia, D. (2001) A single domain of the replication termination protein of Bacillus subtilis is involved in arresting both DnaB helicase and RNA polymerase. J Biol Chem 276 : 23471 23479.
15. Gotter, A., Suppa, C. Emanuel, B. (2007) Mammalian TIMELESS and Tipin are evolutionarily conserved replication fork-associated factors. J Mol Biol 366 : 36 52.
16. Griffiths, A., Andersen, P. Wake, R. (1998) Replication terminator protein-based replication fork-arrest systems in various Bacillus species. J Bacteriol 180 : 3360 3367.
17. Henderson, T., Nilles, A., Valjavec-Gratian, M. Hill, T. (2001) Site-directed mutagenesis and phylogenetic comparisons of the Escherichia coli Tus protein: DNA-protein interactions alone can not account for Tus activity. Mol Genet Genomics 265 : 941 953.
18. Hill, T. Marians, K. (1990) Escherichia coli Tus protein acts to arrest the progression of DNA replication forks in vitro. Proc Natl Acad Sci USA 1990 : 2481 2485.
19. Kamada, K., Horiuchi, T., Ohsumi, K., Shimamoto, N. Morikawa, K. (1996) Structure of a replication-termination protein complexed with DNA. Nature 383 : 598 603.
20. Kaplan, D.L. O'Donnell, M. (2002) DnaB drives DNA branch migration and dislodges proteins while encircling two DNA strands. Mol Cell 10 : 647 657.
21. Katou, Y., Kanoh, Y., Bando, M., Noguchi, H., Tanaka, H., Ashikari, T., et al. (2003) S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex. Nature 424 : 1078 1083.
22. Kaul, S., Mohanty, B., Sahoo, T., Patel, I., Khan, S. Bastia, D. (1994) The replication terminator protein of the gram-positive bacterium Bacillus subtilis functions as a polar contrahelicase in gram-negative Escherichia coli. Proc Natl Acad Sci USA 91 : 11143 11147.
23. Khatri, G., MacAllister, T., Sista, P. Bastia, D. (1989) The replication terminator protein of E. coli is a DNA sequence-specific contra-helicase. Cell 59 : 667 674.
24. Labib, K. Hodgson, B. (2007) Replication fork barriers: pausing for a break or stalling for time? EMBO Report 8 : 346 353.
25. Langley, D., Smith, M., Lewis, P. Wake, R. (1993) Protein-nucleoside contacts in the interaction between the replication terminator protein of Bacillus subtilis and the DNA terminator. Mol Microbiol 10 : 771 779.
26. Lee, E.H., Kornberg, A., Hidaka, M., Kobayashi, T. Horiuchi, T. (1989) Escherichia coli replication termination protein impedes the action of helicases. Proc Natl Acad Sci USA 86 : 9104 9108.
27. Mohanty, B., Sahoo, T. Bastia, D. (1998) Mechanistic studies on the impact of transcription on sequence-specific termination of DNA replication and vice versa. J Biol Chem 273 : 3051 3059.
28. Mohanty, B., Bairwa, N. Bastia, D. (2006) The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 103 : 897 902.
29. Mohanty, B., Bairwa, N. Bastia, D. (2009) Contrasting roles of checkpoint proteins as recombination modulators at Fob1-Ter complexes with or without fork arrest. Eukaryotic Cell doi:10.1128/EC.00382-08
30. Mulcair, M.D., Schaeffer, P.M., Oakley, A.J., Cross, H.F., Neylon, C., Hill, T.M. Dixon, N.E. (2006) A Molecular mousetrap determines polarity of termination of DNA replication in E. coli. Cell 125 : 1309 1313.
31. Mulugu, S., Potnis, A., Shamsuzzaman, Taylor, J., Alexander, K. Bastia, D. (2001) Mechanism of termination of DNA replication of Escherichia coli involves helicase-contrahelicase interaction. Proc Natl Acad Sci USA 98 : 9569 9574.
32. Neylon, C., Brown, S., Kralicek, A., Miles, C., Love, C. Dixon, N. (2000) Interaction of the Escherichia coli replication terminator protein (Tus) with DNA: a model derived from DNA-binding studies of mutant proteins by surface plasmon resonance. Biochemistry 39 : 11989 11999.
33. Sahoo, T., Mohanty, B.K., Lobert, M., Manna, A.C. Bastia, D. (1995) The contrahelicase activities of the replication terminator proteins of Escherichia coli and Bacillus subtilis are helicase-specific and impede both helicase translocation and authentic DNA unwinding. J Biol Chem 270 : 29138 29144.
34. Tourrière, H., Versini, G., Cordón-Preciado, V., Alabert, C. Pasero, P. (2005) Mrc1 and Tof1 promote replication fork progression and recovery independently of Rad53. Mol Cell 19 : 699 706.
35. Vivian, J., Porter, C., Wilce, J. Wilce, M. (2007) An asymmetric structure of the Bacillus subtilis replication terminator protein in complex with DNA. J Mol Biol 370 : 481 491.