Genetic variation among lentil (Lens culinaris Medik) landraces from Southeast Turkey

Plant Breeding

Volumn 128, Issue 2, 2009, Pages 178-186

  Toklu, F ^a   Karakoy T ^b   Hakli, E ^a   Bicer, T ^c   Brandolini, A ^d   Kilian, B ^e   Ozkan H ^a  

^a CUKUROVA UNIVERSITY   (Turkey)

^b Cukurova Agricultural Research Institute   (Turkey)

^c DICLE UNIVERSITY   (Turkey)

^d University of Dicle ^*  (Italy)

^e IPK Gatersleben   (Germany)

Author keywords

AFLP; ISSR; Lentil; Turkey

Indexed keywords

LENS CULINARIS;

EID: 63849097151     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2008.01548.x     Document Type: Article

References (55)

1. Abo-Elwafa, A., K. Murai T. Shimada, 1995 : Intra- and inter-spesific variations in Lens revealed by RAPD markers. Theor. Appl. Genet. 90, 335 340.
2. Akagi, H., Y. Yokozeki, A. Inagaki T. Fujimura, 1996 : Microsatellite DNA markers for rice chromosomes. Theor. Appl. Genet. 93, 1071 1077.
3. Ammiraju, J. S. S., B. B. Dholakia, D. K. Santra, H. Singh, M. D. Lagu, S. A. Tamhankar, H. S. Dhaliwal, V. S. Rao, V. S. Gupta P. K. Ranjekar, 2001 : Identification of inter simple sequence repeat (ISSR) markers associated with seed size in wheat. Theor. Appl. Genet. 102, 726 732.
4. Aydòan, A., A. Sarker, N. Aydin, I. Küsmenòlu, A. Karagöz W. Erskine, 2007 : Registration of 'Kafkas' Lentil. J. Plant Registrations 1, 44 45.
5. Aydòan, A., A. Sarker, N. Aydin, I. Küsmenòlu, A. Karagöz W. Erskine, 2008 : Registration of 'Ozbek' Lentil. J. Plant Registrations 2, 16.
6. Badr, A., K. Müller, R. Schäfer-Pregl, H. El Rabey, S. Effgen, H. H. Ibrahim, C. Pozzi, W. Rohde F. Salamini, 2000 : On the origin and domestication history of barley. Mol. Biol. Evol. 17, 499 510.
7. Bajracharya, J., K. A. Steele, D. I. Jarvis, B. R. Sthapit J. R. Witcombe, 2006 : Rice landrace diversity in Nepal: variability of agro-morphological traits and SSR markers in landraces from a high-altitude site. Field Crop Res. 95, 327 335.
8. Bejiga, G., S. Tsegaye, A. Tullu W. Erskine, 1996 : Quantitative evaluation of Ethiopian landraces of lentil (Lens culinaris). Genet. Resour. Crop Evol. 43, 293 301.
9. Bustos, A. D., C. Casanova, C. Soler N. Jouve, 1998 : RAPD variation in wild populations of four species of the genus Hordeum (Poaceae). Theor. Appl. Genet. 96, 101 111.
10. Chikmawati, T., B. Skovmand J. P. Gustafson, 2005 : Phylogenetic relationships among Secale species revealed by amplified fragment length polymorphism. Genome 48, 792 801.
11. Chin, E. C., M. L. Senior, H. Shu J. C. Smith, 1996 : Maize simple repetitive DNA sequences: abundance and allele variation. Genome 39, 866 873.
12. Doyle, J. J. J. L. Doyle, 1990 : Isolation of plant DNA from fresh tissue. Focus 12, 13 15.
13. Echeverrigaray, S., A. C. Oliveira, M. T. V. Carvalho E. Derbyshire, 1998 : Evaluation of the relationship between lentil accessions using comparative electrophoresis of seed proteins. J. Genet. Breed. 52, 89 94.
14. Erskine, W. M. Choudhary, 1986 : Variation between and within lentil landraces from Yemen Arab Republic. Euphytica 35, 695 700.
15. Erskine, W. F. J. Muehlbauer, 1991 : Allozyme and morphological variation, outcrossing rate and core collection formation in lentil germplasm. Theor. Appl. Genet. 83, 119 125.
16. Erskine, W., Y. Adham L. Holly, 1989 : Geographic distribution of variation in quantitative traits in a world lentil collection. Euphytica 43, 97 103.
17. Erskine, W., S. Chandra, M. Chaudhry, I. A. Malik, A. Sarker, B. Sharma, M. Tufail M. C. Tyagi, 1998 : A bottleneck in lentil: widening its genetic base in South Asia. Euphytica 101, 207 211.
18. Ferguson, M. E., L. D. Robertson, B. V. Ford-Loyd, H. J. Newbury N. Maxted, 1998 : Contrasting genetic variation amongst lentil landraces from different geographic origins. Euphytica 102, 265 273.
19. Fernandez, M. E., A. M. Figueiras C. Benito, 2002 : The use of ISSR and RAPD marker for detecting DNA polymorphism, genotype identification and genetic diversity among barley cultivars with known origin. Theor. Appl. Genet. 104, 845 851.
20. Fikiru, E., K. Tesfaye E. Bekele, 2007 : Genetic diversity and population structure of Ethiopian lentil (Lens culinaris Medikus) landraces as revealed by ISSR marker. Afr. J. Biotechnol. 6, 1460 1468.
21. Ford, R., E. C. K. Pang P. W. J. Taylor, 1997 : Diversity analysis and species identification in lens using PCR generated markers. Euphytica 96, 247 255.
22. Gilbert, J. E., R. V. Lewis, M. J. Wilkinson P. D. S. Kaligari, 1999 : Developing an appropriate strategy to assess genetic variability in plant germplasm collections. Theor. Appl. Genet. 98, 1125 1131.
23. Havey, M. J. F. J. Muehlbauer, 1989 : Variability for restriction fragment lengths and phylogenies in lentils. Theor. Appl. Genet. 77, 839 843.
24. Heun, M., R. Schaefer-Pregl, D. Klawan, R. Castagna, M. Accerbi, B. Borghi F. Salamini, 1997 : Site of einkorn wheat domestication identified by DNA fingerprinting. Science 278, 1312 1314.
25. Hou, Y. C., Z. H. Yan, Y. M. Wei Y. L. Zheng, 2005 : Genetic diversity in barley from West China based on RAPD and ISSR analysis. Barley Genet. Newslet. 35, 9 22.
26. Jaccard, P., 1908 : Nouvelles recherces sur la distribution florale. Bull. Soc. Vaudoise Sci. Nat. 44, 223 270.
27. Kafkas, S., H. Ozkan, B. E. Ak, I. Acar, H. S. Atli S. Koyuncu, 2006 : Detecting DNA polymorphism and genetic diversity in a wide pistachio germplasm: comparison of AFLP, ISSR, and RAPD markers. J. Am. Soc. Hortic. Sci. 131, 522 529.
28. Kahraman, A., I. Kusmenoglu, N. Aydin, A. Aydogan, W. Erskine F. J. Muehlbauer, 2004 : QTL mapping of winter hardiness genes in lentil. Crop Sci. 44, 13 22.
29. Kilian, B., H. Özkan, A. Walther, J. Kohl, T. Dagan, F. Salamini W. Martin, 2007 : Molecular diversity at 18 loci in 321 wild and 92 domesticate lines reveal no reduction of nucleotide diversity during Triticum monococcum (einkorn) domestication: Implications for the origin of agriculture. Mol. Biol. Evol. 24, 2657 2668.
30. Lazaro, A., M. Ruiz, L. de la Rosa I. Martin, 2001 : Relationship between agro/morphological characters and climatic parameters in Spanish landraces of lentil (Lens culinaris Medik.). Genet. Resour. Crop Evol. 48, 239 249.
31. Lev-Yadun, S., A. Gopher S. Abbo, 2000 : The cradle of agriculture. Science 288, 1602 1603.
32. Marotti, I., A. Bonetti, M. Minelli, P. Catizone G. Dinelli, 2007 : Characterization of some Italian common bean (Phaseolus vulgaris L.) landraces by RAPD, semi-random and ISSR molecular markers. Genet. Resour. Crop Evol. 54, 175 188.
33. Morgante, M. A. M. Olivieri, 1993 : PCR-amplified micro-satellite markers in plant genetics. Plant J. 3, 175 182.
34. Muminovic, J., A. Merz, A. E. Melchinger T. Lübberstedt, 2005 : Genetic structure and diversity among radish varieties as inferred from AFLP and ISSR analyses. J. Am. Soc. Hortic. Sci. 130, 79 87.
35. Nei, M., 1973 : Analysis of gene diversity in subdivided populations. Proc. Natl Acad. Sci. USA 70, 3321 3323.
36. Özkan, H., A. Brandolini, R. Schäfer-Pregl F. Salamini, 2002 : AFLP analysis of a collection of tetraploid wheats indicates the origin of emmer and hard wheat domestication in Southeast Turkey. Mol. Biol. Evol. 19, 1797 1801.
37. Özkan, H., S. Kafkas, M. S. Ozer A. Brandolini, 2005 : Genetic relationships among South-East Turkey wild barley populations and sampling strategies of Hordeum spontaneum. Theor. Appl. Genet. 112, 12 20.
38. Piergiovanni, A. R. G. Taranto, 2003 : Geographic distribution of genetic variation in lentil collection as revealed by SDS-PAGE fractionation of seed storage proteins. J. Genet. Breed. 57, 39 46.
39. Powell, W. M., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey A. Rafalski, 1996 : The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2, 225 238.
40. Rohlf, F. J., 2004 : NTSYS-pc ver 2.11T. Exter Software, Setauket, NY.
41. Rongwen, J., M. S. Akkaya, A. A. Bhagwat, U. Lavi P. Cregan, 1995 : The use of microsatellite DNA markers for soybean genotype identification. Theor. Appl. Genet. 90, 43 48.
42. de la Rosa, L. N. Jouve, 1992 : Genetic variation isozyme genes and proteins in Spanish primitive cultivars and wild subspecies of genus Lens. Euphytica 59, 181 187.
43. Sarker, A. W. Erskine, 2006 : Recent progress in the ancient lentil. J. Agric. Sci. 144, 19 29.
44. Sharma, S. K., I. K. Dawson R. Waugh, 1995 : Relationship among cultivated and wild lentils revealed by RAPD analysis. Theor. Appl. Genet. 91, 647 654.
45. Smith, J. S. C., E. C. L. Chin, H. Shu, O. S. Smith, S. J. Wall, M. L. Senior, S. E. Mitchel, S. Kresorich J. Tiegle, 1997 : An evaluation of the utility of SSR loci as molecular marker in maize (Zea mays): comparisons with data from RFLP and pedigree. Theor. Appl. Genet. 95, 163 173.
46. Sonnante, G. D. Pignone, 2001 : Assesment of genetic variation in a collection of lentil using molecular tools. Euphytica 120, 301 307.
47. Sonnante, G. D. Pignone, 2007 : The major Italian landraces of lentil (Lens culinaris Medik.): their molecular diversity and possible origin. Genet. Resour. Crop Evol. 54, 1023 1031.
48. Sultana, T., A. Ghaffoor M. Ashraf, 2006 : Geographic patterns of diversity of cultivated lentil germplasm collected from Pakistan, as assessed by seed protein assays. Acta Biol. Cracoviensia Ser. Bot. 48, 77 84.
49. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kupier M. Zabeau, 1995 : AFLP. a new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407 4414.
50. Xu, F. M. Sun, 2001 : Comparative analysis of phylogenetic relationships of grain amaranths and their wild relatives (Amaranthus; Amaranthaceae) using internal transcribed spacer, amplified length polymorphism, and double-primer fluorescent intersimple sequence repeat markers. Mol. Phylogenet. Evol. 21, 372 387.
51. Yeh, F. C., R. C. Yang, T. B. J. Boyle, Z. H. Ye J. X. Mao, 1997 : POPGENE, the User-Friendly Shareware for Population Genetic Analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, AB.
52. Yuzbasioglu, E., S. Ozcan L. Acik, 2006 : Analysis of genetic relationship among Turkish cultivars and breeding lines of Lens culinatis Mestile using RAPD markers. Genet. Resour. Crop Evol. 53, 507 514.
53. Zhao, X. X., E. J. Jia, W. G. Yang, Y. S. Dong B. Liu, 2006 : DNA methylation polymorphism in a set of elite maize inbred lines revealed by methylation-sensitive ISSR analysis. Cereal Res. Commun. 34, 879 886.
54. Zietkiewicz, E., A. Rafalski D. Labuda, 1994 : Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20, 176 183.
55. Zohary, D. M. Hopf, 2000 : Domestication of Plants in the Old World, 3rd edn. 316 pp. Oxford University Press, New York.