DNA methylation polymorphism in a set of elite maize inbred lines revealed by methylation-sensitive ISSR analysis

Cereal Research Communications

Volumn 34, Issue 2-3, 2006, Pages 879-886

  Zhao, Xinxin ^a,b   Jia, Enji ^b   Yang, Weiguang ^b   Dong, Yingshan ^c   Liu, Bao ^a  

^a NORTHEAST NORMAL UNIVERSITY   (China)

^b JILIN AGRICULTURAL UNIVERSITY   (China)

^c National Center of Transgenic Plant Research and Commercialization   (China)

Author keywords

DNA methylation polymorphism; ISSR fingerprinting; Maize inbred lines; Molecular marker

Indexed keywords

ZEA MAYS;

EID: 33749522063     PISSN: 01333720     EISSN: None     Source Type: Journal    
DOI: 10.1556/CRC.34.2006.2-3.215     Document Type: Article

References (26)

1. Ashikawa I (2001) Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars. Plant Molecular Biology 45: 31-39
2. Cervera MT, Ruiz-Garcia L, Martinez-Zapater JM (2002) Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics 268: 543-552
3. Colot V, Rossignol JL (1999) Eukaryotic DNA methylation as an evolutionary device. Bioessays 21: 402-411
4. Gruenbaum Y, Naveh-Many T, Cedar H, Razin A (1981) Sequence specificity of methylation in higher plant DNA. Nature 292: 860-862
5. Hollick JB, Chandler VL (1998) Epigenetic allelic states of a maize transcriptional regulatory locus exhibit overdominant gene action. Genetics 150: 891-897
6. Kato M, Miura A, Bender J, Jacobsen SE, Kakutani T (2003) Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Current Biology 13: 421-426
7. Keyte AL, Percifield R, Liu B, Wendel JF (2005) Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). Mol Genet Genomics (submitted)
8. Kidwell KK, Osborn TC (1992) Simple plant DNA isolation procedures. In Plant genomes: Methods for Genetic and Physical Mapping, J. S. Beckman and T.C. Osborn, eds (Dordrecht, The Netherlands: Kluwer Academic Publishers), pp. 1-13
9. Knox MR, Ellis THN (2001) Stability and inheritance of methylation states at PstI sites in Pisum. Mol Genet Genomics 265: 497-507
10. Kovarik A,. Koukalová B, Bezdek M, Opatrn Z (1997) Hypermethylation of tobacco heterochromatic loci in response to osmotic stress. Theor. Appl. Genet. 95: 301-306
11. Liu B, Wendel JF (2003) Epigenetic phenomena and the evolution of plant allopolyploids. Molecular Phylogenetics and Evolution 29: 365-379
12. McClelland M, Nelson M, Raschke E. (1994) Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. Nucleic Acids Res. 22: 3640-3659
13. Messeguer R, Ganal MW, Stevens JC, Tanksley SD (1991) Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA. Plant Molecular Biology 16: 753-770
14. Morgante M and Salamini F (2003) From plant genomics to breeding practice. Curr Opin Biotechnol. 14: 214-219
15. Portis E, Acquadro A, Comino C, Lanteri S (2003) Analysis of DNA methylation during germination of pepper (Capsicum annuum L.) seeds using methylation-sensitive amplification polymorphism (MSAP). Plant Science 166: 169-178
16. Richards EJ (1997) DNA methylation and plant development. Trends Genet. 13: 319-323
17. Riddle NC, Richards EJ (2002) The control of natural variation in cytosine methylation in Arabidopsis. Genetics 162: 355-363
18. Rohlf FJ (1993) NTSYS-pc. Numerical taxonomy and multivariate analysis system. Exeter, Publishing Ltd., New York, USA.
19. Swofford DL, Olsen GJ (1990) Phylogenetic reconstruction. In: Molecular Systemics. Edited by DM Hillis & C Moritz. Sinauer Associations, Sunderland. pp. 411-501
20. Tariq M, Paszkowski J (2004) DNA and histone methylation in plants. Trends in Genetics 20: 244-251
21. Wada Y, Miyamoto K, Kusano T, Sano H. (2004) Association between up-regulation of stress-responsive genes and hypomethylation of genomic DNA in tobacco plants. Mol Genet Genomics. 271: 658-66
22. Walbot V (2004) Genomic, chromosomal and allelic assessment of the amazing diversity of maize. Genome Biol. 5: 328
23. Wang YM, Lin XY, Dong B, Wang YD, Liu B (2004) DNA methylation polymorphism in a set of elite rice cultivars and its possible contribution to inter-cultivar differential gene expression. Cell. Mol. Biol. Lett. 9: 543-556
24. Xiong LZ, Xu CG, Maroof MAS, Zhang Q (1999) Patterns of cytosine methyaltion in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261: 439-46
25. Zhao, SH, Wang P, Li HH, Zhang JP and Li DM (2004) Evaluation of phylogenetic relationship among 28 maize inbred lines based on RAPD markers. Biotechnology 14: 8-9
26. Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183