Inhella inkyongensis gen. nov., sp. nov., a new freshwater bacterium in the order Burkholderiales

Journal of Microbiology and Biotechnology

Volumn 19, Issue 1, 2009, Pages 5-10

  Song, Jaeho ^a   Oh, Hyun Myung ^a   Lee, Jung Sook ^b   Woo, Seung Buhm ^a   Cho, Jang Cheon ^a  

^a Inha University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

16S rRNA gene; Freshwater; Inhella inkyongensis; Novel genus; Sphaerotilus Leptothrix group

Indexed keywords

AMPICILLIN; CHLORAMPHENICOL; ERYTHROMYCIN; GENTAMICIN; KANAMYCIN; PENICILLIN G; RIFAMPICIN; RNA 16S; STREPTOMYCIN; TETRACYCLINE; VANCOMYCIN; BACTERIAL DNA; FRESH WATER; RIBOSOME DNA;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BURKHOLDERIALES; CLADISTICS; DNA BASE COMPOSITION; FRESHWATER SPECIES; INHELLA INKYONGENSIS; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; SEQUENCE HOMOLOGY; TAXONOMIC IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LEPTOTHRIX; MICROBIOLOGY; MOLECULAR GENETICS; SPECIES DIFFERENCE; SPHAEROTILUS; ULTRASTRUCTURE;

BACTERIA (MICROORGANISMS); BURKHOLDERIALES; IDEONELLA DECHLORATANS; LEPTOTHRIX; MITSUARIA CHITOSANITABIDA; NEGIBACTERIA; PSEUDOMONAS SACCHAROPHILA; ROSEATELES DEPOLYMERANS; SPHAEROTILUS;

BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; LEPTOTHRIX; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; SPHAEROTILUS; WATER MICROBIOLOGY;

EID: 63449115552     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.0802.145     Document Type: Article

References (28)

1. Amakata, D., Y. Matsuo, K. Shimono, J. K. Park, C. S. Yun, H. Matsuda, A. Yokota, and M. Kawamukai. 2005. Mitsuaria chitosanitabida gen. nov., sp. nov., an aerobic, chitosanase-producing member of the 'Betaproteobacteria'. Int. J. Syst. Evol. Microbiol. 55: 1927-1932.
2. Bowman, J. P. 2000. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int. J. Syst. Evol. Microbiol. 50: 1861-1868.
3. Cho, J.-C. and S. J. Giovannoni. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70: 432-440.
4. Choo, Y.-J., K. Lee, J. Song, and J.-C. Cho. 2007. Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum 'Verrucomicrobia'. Int. J. Syst. Evol. Microbiol. 57: 532-537.
5. Garrity, G. M., J. A. Bell, and T. Lilburn. 2005. Order I. Burkholderiales ord. nov., pp. 575-763. In D. J. Brenner, N. R. Krieg, J. T. Staley, and G. M. Garrity (eds.), Bergey's Manual of Systematic Bacteriology, Vol. 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), 2nd Ed. Springer, New York.
6. Gomila, M., B. Bowien, E. Falsen, E. R. Moore, and J. Lalucat. 2007. Description of Pelomonas aquatica sp. nov. and Pelomonas puraquae sp. nov., isolated from industrial and haemodialysis water. Int. J. Syst. Evol. Microbiol. 57: 2629-2635.
7. Gomila, M., B. Bowien, E. Falsen, E. R. Moore, and J. Lalucat. 2008. Description of Roseateles aquatilis sp. nov. and Roseateles terrae sp. nov., in the class Betaproteobacteria, and emended description of the genus Roseateles. Int. J. Syst. Evol. Microbiol. 58: 6-11.
8. Kalmbach, S., W. Manz, J. Wecke, and U. Szewzyk. 1999. Aquabacterium gen. nov., with description of Aquabacterium citratiphilum sp. nov., Aquabacterium parvum sp. nov. and Aquabacterium commune sp. nov., three in situ dominant bacterial species from the Berlin drinking water system. Int. J. Syst. Bacteriol. 49: 769-777.
9. Komagata, K. and K. Suzuki. 1987. Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol. 19: 161-203.
10. Lechner, U., D. Brodkorb, R. Geyer, G. Hause, C. Hartig, G. Auling, et al. 2007. Aquincola tertiaricarbonis gen. nov., sp. nov., a tertiary butyl moiety-degrading bacterium. Int. J. Syst. Evol. Microbiol. 57: 1295-1303.
11. Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, et al. 2004. ARB: A software environment for sequence data. Nucleic Acids Res. 32: 1363-1371.
12. Malmqvist, A., T. Welander, E. Moore, A. Ternström, G. Molin, and I. Stenström. 1994. Ideonella dechloratans, gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor. Syst. Appl. Microbiol. 17: 58-64.
13. Mesbah, M., U. Premachandran, and W. B. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167.
14. Nakatsu, C. H., K. Hristova, S. Hanada, X. Y. Meng, J. R. Hanson, K. M. Scow, and Y. Kamagata. 2006. Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria. Int. J. Syst. Evol. Microbiol. 56: 983-989.
15. Ostle, A. G. and J. G. Holt. 1982. Nile blue A as a fluorescent stain for poly-beta-hydroxybutyrate. Appl. Environ. Microbiol. 44: 238-241.
16. Ramana Ch, V., C. Sasikala, K. Arunasri, P. Anil Kumar, T. N. Srinivas, S. Shivaji, P. Gupta, J. Suling, and J. F. Imhoff. 2006. Rubrivivax benzoatilyticus sp. nov., an aromatic, hydrocarbon-degrading purple betaproteobacterium. Int. J. Syst. Evol. Microbiol. 56: 2157-2164.
17. Rapala, J., K. A. Berg, C. Lyra, R. M. Niemi, W. Manz, S. Suomalainen, L. Paulin, and K. Lahti. 2005. Paucibacter toxinivorans gen. nov., sp. nov., a bacterium that degrades cyclic cyanobacterial hepatotoxins microcystins and nodularin. Int. J. Syst. Evol. Microbiol. 55: 1563-1568.
18. T. J. Microbiol. Biotechnol. 6: 68-69.
19. Simpson, J. M., J. W. Santo Domingo, and D. J. Reasoner. 2004. Assessment of equine fecal contamination: The search for alternative bacterial source-tracking targets. FEMS Microbiol. Ecol. 47: 65-75.
20. Song, J. and J.-C. Cho. 2007. Methylibium aquaticum sp. nov., a betaproteobacterium isolated from a eutrophic freshwater pond. Int. J. Syst. Evol. Microbiol. 57: 2125-2128.
21. Song, J., S.-J. Yang, and J.-C. Cho. 2007. "Bring to lab" of 19 novel species among 60 isolates retrieved from a freshwater pond. J. Microbiol. Biotechnol. 17: 168-175.
22. Spring, S. 2002. The genera Leptothrix and Sphaerotilus., pp. release 3.9, 1 April 2002. In M. Dworkin, K. H. Schleifer, and E. Stackebrandt (eds.), The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd Ed. Springer-Verlag, New York.
23. Spring, S., P. Kämpfer, W. Ludwig, and K. H. Schleifer. 1996. Polyphasic characterization of the genus Leptothrix: New descriptions of Leptothrix mobilis sp. nov. and Leptothrix discophora sp. nov. nom. rev. and emended description of Leptothrix cholodnii emend. Syst. Appl. Microbiol. 19: 634-643.
24. Suyama, T., T. Shigematsu, S. Takaichi, Y. Nodasaka, S. Fujikawa, H. Hosoya, Y. Tokiwa, T. Kanagawa, and S. Hanada. 1999. Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll α-containing obligate aerobe belonging to the beta-subclass of the Proteobacteria. Int. J. Syst. Evol. Microbiol. 49: 449-457.
25. VP, pp. 686-763. In D. J. Brenner, N. R. Krieg, J. T. Staley, and G. M. Garrity (eds.), Bergey's Manual of Systematic Bacteriology, Vol. 2 (The Proteobacteria), Part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), 2nd Ed. Springer, New York.
26. Willems, A., M. Gillis, and J. De Ley. 1991. Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov., comb. nov., and phylogenetic relationships with Leptothrix, Sphaerotilus natans, Pseudomonas saccharophila, and Alcaligenes latus. Int. J. Syst. Bacteriol. 41: 65-73.
27. T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. Int. J. Syst. Evol. Microbiol. 55: 2419-2425.
28. Yoon, M. H., L. N. Ten, W. T. Im, and S. T. Lee. 2007. Methylibium fulvum sp. nov., a member of the Betaproteobacteria isolated from ginseng field soil, and emended description of the genus Methylibium. Int. J. Syst. Evol. Microbiol. 57: 2062-2066.