Aquincola tertiaricarbonis gen. nov., sp. nov., a tertiary butyl moiety-degrading bacterium

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 6, 2007, Pages 1295-1303

  Lechner, Ute ^a   Brodkorb, Danny ^a   Geyer, Roland ^b,e   Hause, Gerd ^a   Härtig, Claus ^b   Auling, Georg ^c   Fayolle Guichard, Françoise ^d   Piveteau, Pascal ^d   Müller, Roland H ^b   Rohwerder, Thore ^b,f  

^a MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

^b HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

^c LEIBNIZ UNIVERSITY HANNOVER   (Germany)

^d IFP ENERGIES NOUVELLES   (France)

^e LC MS Support   (Switzerland)

^f UNIVERSITY OF DUISBURG ESSEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

GROUND WATER; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S; TERT BUTYL ALCOHOL; UBIQUINONE; UBIQUINONE 8; UNCLASSIFIED DRUG;

AQUINCOLA TERTIARICARBONIS; ARTICLE; BACTERIUM ISOLATE; BETAPROTEOBACTERIA; CHEMOTAXONOMY; FATTY ACID ANALYSIS; GENE SEQUENCE; GENETIC ANALYSIS; GRAM NEGATIVE AEROBIC RODS AND COCCI; IDEONELLA DECHLORATANS; LEPTOTHRIX; LEPTOTHRIX MOBILIS; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; ROSEATELES; RUBRIVIVAX GELATINOSUS; SPECIES IDENTIFICATION; STRAIN DIFFERENCE; TAXONOMIC RANK;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BETAPROTEOBACTERIA; BIODEGRADATION, ENVIRONMENTAL; CYTOPLASMIC GRANULES; DNA, BACTERIAL; DNA, RIBOSOMAL; FIMBRIAE, BACTERIAL; FLAGELLA; GENES, RRNA; HYDROXYBUTYRATES; LIPIDS; LOCOMOTION; METABOLIC NETWORKS AND PATHWAYS; METHYL ETHERS; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYESTERS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY; TERT-BUTYL ALCOHOL; UBIQUINONE; WATER MICROBIOLOGY;

AQUABACTERIUM; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; IDEONELLA; IDEONELLA DECHLORATANS; LEPTOTHRIX; LEPTOTHRIX MOBILIS; ROSEATELES; RUBRIVIVAX; RUBRIVIVAX GELATINOSUS;

EID: 34250774581     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64663-0     Document Type: Article

References (39)

1. Amakata, D., Matsuo, Y., Shimono, K, Park, J. K, Yun, C. S., Matsuda, H., Yokota, A. & Kawamukai, M. (2005). Mitsuaria chitosanitabida gen. nov., sp. nov., arr aerobic, chitosanase-producing member of the 'Betaproteobacteria'. Int J Syst Evol Microbiol 55, 1927-1932.
2. Auling, G., Probst A. Kroppenstedt, R. M. (1986). Chemo- and molecular taxonomy of D(-)-tartrate-utilizing pseudomonads. Syst Appl Microbiol 8, 114-120.
3. Blümel, S., Busse, H. J, Stolz, A. & Kämpfer, P. (2001 . Xenophilus azovorans gen. nov., sp. nov., a soil bacterium that is able to degrade azo dyes of the Orange II type. Int J Syst Evol Microbiol 51, 1831-1837.
4. Breitenstein, A., Wiegel, J., Haertig, C., Weiss, N., Andreesen, J. R. & Lechner, U. (2002). Reclassification of Clostridium hydroxybenzoicum as Sedimentibacter hydroxybenzoicus gen. nov., comb. nov., and description of Sedimentibacter saalensis sp. nov. Int J Syst Evol Microbiol 52, 801-807.
5. Breuer, U., Ackermann, J.-U. & Babel, W. (1995). Accumulation of poly (3-hydroxybutyric acid) and overproduction of exopolysaccharides in a mutant of a methylotrophic bacterium. Can J Microbiol 41, 55-59.
6. Brosius, J., Dull, T. J., Sleeter, D. D. & Noller, H. F. (1981). Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107-127.
7. Curtis, P. D., Geyer, R., White, D. C. & Shimkets, L J. (2006 . Novel lipids in Myxococcus xanthus and their role in chemotaxis. Environ Microbiol 8, 1935-1949.
8. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation. rates. Eur J Biochem 12, 133-142.
9. Fayolle, F., Vandecasteele, J.-P. & Monot, F. (2001). Microbial degradation and fate in the environment of methyl tert-butyl ether and related fuel oxygenates. Appl Microbiol Biotechnol 56, 339-349.
10. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
11. François, A., Mathis, H., Godefroy, D., Piveteau, P, Fayolle, F. & Monot, F. (2002). Biodegradation of methyl tert-butyl ether and other fuel oxygenates by a new strain, Mycobacterium austroafricanum IFP 2012. Appl Environ Microbiol 68, 2754-2762.
12. Gerhardt P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology, Washington, DC: American Society for Microbiology.
13. Härtig, C., Loffhagen, N. & Harms, H. (2005). Formation of trans fatty acids is not involved in growth-linked membrane adaptation of Pseudomonas putida. Appl Environ Microbiol 71, 1915-1922.
14. Hatzinger, P. B, McClay, K., Vainberg, S, Tugusheva, M, Condee, C. W. & Stetfan, R. J. (2001). Biodegradation of methyl tert-butyl ether by a pure bacterial culture. Appl Environ Microbiol 67 5601-5607.
15. Hause, G. & Hahn, H. (1998). Cytological characterization of multicellular structures in embryogenic microspore cultures of Brassica napus. L Bot Acta 111, 204-211.
16. Hiraishi, A., Hoshino, Y. & Satoh, T. (1991). Rhodoferax fermentans gen. nov., sp. nov., a phototrophic purple nonsulfur bacterium previously referred to as the "Rhodocyclus gelatinosus like" group. Arch Microbiol 155, 330-336.
17. AL. In Bergey's Manual of Systematic Bacteriology Vol. 3, pp. 1678-1682. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt. Baltimore: Williams & Wilkins.
18. Jeon, C. O., Park W., Ghiorse, W. C. & Madsen, E. L. (2004). Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. Int J Syst Evol Microbiol 54, 93-97.
19. Lechner, U., Baumbach, R., Becker, D., Kitunen, V., Auling, G. & Salkinoia-Solonen, M. (1995). Degradation of 4-chloro-2-methylphenol by an activated sludge isolate and its taxonomic description. Biodegradation 6, 83-92.
20. Lopes Ferreira, N., Malandain, C. & Fayolle-Guichard, F. (2006a . Enzymes and genes involved in the aerobic biodegradation of methyl tert-butyl ether (MTBE). Appl Microbiol Biotechnol 72, 252-262.
21. Lopes Ferreira, N., Maciel, H., Mathis, H., Monot F., Fayolle-Guichard, F. & Greer, C. W. (2006b). Isolation and characterization of a new Mycobacterium austroafricanum strain, IFP 2015, growing on MTBE. Appl Microbiol Biotechnol 70, 358-365.
22. Lytle, C. A., Gan, Y.-D. & White, D. C. (2000). Electrospray ionization/mass spectrometry compatible reversed-phase separation of phospholipids: Piperidine as a post column modifier for negative ion detection. J Microbiol Methods 41, 227-234.
23. Malmqvist, A., Welander, T., Moore, E., Ternström, A., Molin, G. & Stenström, I.-M. (1994). Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor. Syst Appl Microbiol 17, 58-64.
24. Manaia, C. M., Nunes, O. C. & Nogales, B. (2003). Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge. Int J Syst Evol Microbiol 53, 1375-1382.
25. Müller, S., Bley, T. & Babel, W. (1999). Adaptive responses of Ralstonia eutropha to feast and famine conditions analysed by flow cytometry. J Biotechnol 75, 81-97.
26. Nakatsu, C. H, Hristova, K, Hanada, S., Meng, X.-Y., Hanson, J. R., Scow, K M. & Kamagata, Y. (2006). Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria. Int J Syst Evol Microbiol 56, 983-989.
27. Piveteau, P., Fayolle, F., Vandecasteele, J.-P. & Monot, F. (2001 Biodegradation of tert-butyl alcohol and related xenobiotics by a methylotrophic bacterial isolate. Appl Microbiol Biotechnol 55, 369-373.
28. Ramana, Ch. V., Sasikala, Ch., Arunasri, K, Anil Kumar, P., Srinivas, T. N., Shivaji, S., Gupta, P., Süling, J. & Imhoff, J. F. (2006 . Rubrivivax benzoatilyticus sp. nov., an aromatic, hydrocarbondegrading purple betaprotoobacterium. Int J Syst Evol Microbiol 56, 2157-2164.
29. Reasoner, D. J. & Geldrelch, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
30. Rohwerder, T., Breuer, U, Benndorf, D., Lechner, U. & Müller, R. H. (2006). The alkyl tert butyl ether intermediate 2-hydroxyisobutyrate is degraded via a novel cobalamin-dependent mutase pathway. Appl Environ Microbiol 72, 4128-4135.
31. Siering, P. L. & Ghiorse, W. C. (1996). Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses. Int J Syst Bacteriol 46, 173-182.
32. Spring, S., Kämpfer, P., Ludwig, W. & Schleifer, K H. (1996 . Polyphasic characterization of the genus Leptothrix: New descriptions of Leptothrix mobilis sp. nov. and Leptothrix discophora sp. nov. nom. rev. and emended description of Leptothrix cholodnii emend. Syst Appl Microbiol 19, 634-643.
33. Stackebrandt, E. (2006). Defining taxonomic ranks. In The Prokaryotes, vol. 1, Symbiotic Associations, Biotechnology, Applied Microbiology, pp. 29-57. Edited by M. Dworkin, S. Falkow, E. Roseberg, K.-H. Schleifer and E. Stackebrandt. New York: Springer.
34. Suyama, T., Shigematsu, T., Takaichi S., Nodasaka, Y., Fujikawa, S., Hosoya, H., Tokiwa, Y., Kanagawa, T. & Hanada, S. (1999). Roseateles depolymerans gen. nov., sp. nov., a new bacteriochlorophyll a-containing obligate aerobe belonging to the β-subclass of the Proteobacteria. Int J Syst Bacteriol 49, 449-457.
35. Weisburg, W. G., Barns, S. M., Petletier, D. A. & Lane, D. J. (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
36. Wen, A., Fegan, M., Hayward, C., Chakraborty, S. & Sly, L. I. (1999) Phylogenetic relationships among members of the Comamonadaceae and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov. Int J Syst Bacteriol 49, 567-576.
37. White, D. C. & Ringelberg, D. B. (1998). Signature lipid biomarker analysis. In Techniques in Microbial Ecology, pp. 255-272. Edited by R. S. Burlage, R. Atlas, D. Stahl, G. Geesey & G. Saylor. New York: Oxford University Press.
38. Willems, A, Gilles, M. & de Ley, J. (1991). Transfer of Rhodocyclus gelatinosus to Rubrivivax gelatinosus gen. nov., comb. nov., and phylogenetic relationships with Leptothrix, Sphaerotilus; natans, Pseudomonas saccharophila, and Alcaligenes latus. Int J Syst Evol Microbiol 41, 65-73.
39. T and IAM 12664 and Pseudomonas saccharophila as Azohydromonas lata gen. nov., comb. nov., Azohydromonas australica sp. nov. and Pelomonas saccharophila gen. nov., comb. nov., respectively. Int J Syst Evol Microbiol 55, 2419-2425.