Methylibium fulvum sp. nov., a member of the Betaproteobacteria isolated from ginseng field soil, and emended description of the genus Methylibium

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 9, 2007, Pages 2062-2066

  Yoon, Min Ho ^a   Ten, Leonid N ^b   Im, Wan Taek ^c   Lee, Sung Taik ^c  

^a Chungnam National University   (South Korea)

^b PaiChai University   (South Korea)

^c Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CATALASE; CYTOSINE; FATTY ACID; GUANINE; NITRATE; NITRITE; OXIDOREDUCTASE; QUINONE DERIVATIVE; RNA 16S;

AEROBIC BACTERIUM; ANIMAL CELL; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; BETAPROTEOBACTERIA; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; GENUS; GINSENG; GRAM NEGATIVE BACTERIUM; KOREA; LIPID COMPOSITION; METHYLIBIUM FULVUM; NEW SPECIES; NITRATE REDUCING BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOIL MICROFLORA; STRAIN DIFFERENCE; STRAIN IDENTIFICATION;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BETAPROTEOBACTERIA; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NITRATES; NITRITES; OXIDATION-REDUCTION; OXIDOREDUCTASES; PANAX; PHYLOGENY; QUINONES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; METHYLIBIUM; METHYLIBIUM PETROLEIPHILUM; NEGIBACTERIA; PANAX GINSENG;

EID: 34848909952     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64909-0     Document Type: Article

References (22)

1. Atlas, R. M. (1993). Handbook of Microbiological Media. Edited by L. C. Parks. Boca Raton, FL: CRC Press.
2. Buck, J. D. (1982). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
3. Cappuccino, J. G. & Sherman, N. (2002). Microbiology: A Laboratory Manual, 6th edn. San Francisco: Benjamin Cummings.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonudeic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1985). Confidence limit on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
6. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. Hall, T. A. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
8. Hiraishi, A., Ueda, Y., Ishihara, J. & Morl, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by high-performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
9. Im, W.-T., Jung, H.-M., Cul, Y.-S., Liu, Q-M., Zhang, S.-L. & Lee, S.-T. (2005). Cultivation of the three hundreds of bacterial species from the soil of the ginseng field and mining the novel lineage bacteria. In Proceedings of the International Meeting of the Federation of Korean Microbiological Societies, abstract A035, p. 169. Seoul: Federation of Korean Microbiological Societies.
10. Kim, M. K., Im, W.-T., Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a β-glucosidase producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
11. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
12. Kouker, G. & Jaeger, K-E. (1987). Specific and sensitive plate assay for bacterial lipases. Appl Environ Microbiol 53, 211-213.
13. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
14. Liu, O.-M., Im, W.-T., Lee, M., Yang, D.-C. & Lee, S.-T. (2006). Dyadobacter ginsengisoli sp. nov. isolated from soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 56, 1939-1944.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Moore, D. D. & Dowhan, D. (1995). Preparation and analysis of DNA. In Current Protocols in Molecular Biology, pp. 2-11. Edited by F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley.
17. Nakatsu, C. H., Hristova, K., Hanada, S., Meng, X.-Y., Hanson, J. R., Scow, K. M. & Kamagata, Y. (2006). Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria. Int J Syst Evol Microbiol 56, 983-989.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
20. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
21. Ten, L. N., Im, W.-T., Kim, M.-K., Kang, M.-S. & Lee, S.-T. (2004). Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. J Microbiol Methods 56, 375-382.
22. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.