-
1
-
-
3543137973
-
Resource Description Framework (RDF): Concepts and Abstract Syntax
-
10 February 2004, last accessed
-
Klyne G, Carroll JJ. Resource Description Framework (RDF): Concepts and Abstract Syntax. W3C Recommendation 10 February 2004. http://www.w3.org/ TR/2004/REC-rdf-concepts-20040210/ last accessed).
-
Recommendation
, vol.W3C
-
-
Klyne, G.1
Carroll, J.J.2
-
2
-
-
43849092309
-
Searching the NCBI databases using Entrez
-
Chapter 6:UNit 6 10
-
Baxevanis AD. Searching the NCBI databases using Entrez, Curr Protoc Hum Genet 2006;Chapter 6:UNit 6 10.
-
(2006)
Curr Protoc Hum Genet
-
-
Baxevanis, A.D.1
-
3
-
-
0030010970
-
Entrez: Molecular biology database and retrieval system
-
Schuler GD, Epstein JA, Ohkawa H, et al. Entrez: Molecular biology database and retrieval system. Methods Enzymol 1996;266 141-62.
-
(1996)
Methods Enzymol
, vol.266
, pp. 141-162
-
-
Schuler, G.D.1
Epstein, J.A.2
Ohkawa, H.3
-
4
-
-
0029967362
-
-
Etzold T, Ulyanov A, Argos P. SRS: Information retrieval system for molecular biology data banks. Methods Enzymol 1996;266 114-28.
-
Etzold T, Ulyanov A, Argos P. SRS: Information retrieval system for molecular biology data banks. Methods Enzymol 1996;266 114-28.
-
-
-
-
6
-
-
0034910345
-
Navigating gene expression using microarrays - a technology review
-
Schulze ADJ. Navigating gene expression using microarrays - a technology review. Nature Cell Biol 2001;3: E190-5.
-
(2001)
Nature Cell Biol
, vol.3
-
-
Schulze, A.D.J.1
-
7
-
-
58149330982
-
Meta-analysis of gene expression profiles in breast cancer: Toward a unified understanding of breast cancer subtyping and prognosis signatures
-
Wirapati P, Sotiriou C, Kunkel S, et al. Meta-analysis of gene expression profiles in breast cancer: Toward a unified understanding of breast cancer subtyping and prognosis signatures. Breast Cancer Res 2008;10:R65.
-
(2008)
Breast Cancer Res
, vol.10
-
-
Wirapati, P.1
Sotiriou, C.2
Kunkel, S.3
-
8
-
-
70449558618
-
Meta-analysis of gene expression profiles related to relapse-free survival in 1,079 breast cancer patients
-
Gyorffy B, Schafer R. Meta-analysis of gene expression profiles related to relapse-free survival in 1,079 breast cancer patients. Breast Cancer Res Treat 2008.
-
(2008)
Breast Cancer Res Treat
-
-
Gyorffy, B.1
Schafer, R.2
-
9
-
-
63349099766
-
An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer
-
Liang Y. An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer. BMCMed Genomics 2008;1:61.
-
(2008)
BMCMed Genomics
, vol.1
, pp. 61
-
-
Liang, Y.1
-
10
-
-
63349091075
-
Gene expression metaanalysis identifies chromosomal regions and candidate genes involved in breast cancer metastasis
-
Thomassen M, Tan Q, Kruse TA. Gene expression metaanalysis identifies chromosomal regions and candidate genes involved in breast cancer metastasis. Breast Cancer Res Treat 2008.
-
(2008)
Breast Cancer Res Treat
-
-
Thomassen, M.1
Tan, Q.2
Kruse, T.A.3
-
11
-
-
51049118140
-
An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer
-
Stemke-Hale K, Gonzalez-Angulo AM, Lluch A, et al. An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer. Cancer Res 2008;68:6084-91.
-
(2008)
Cancer Res
, vol.68
, pp. 6084-6091
-
-
Stemke-Hale, K.1
Gonzalez-Angulo, A.M.2
Lluch, A.3
-
12
-
-
51449093281
-
A Semantic Web management model for integrative biomedical informatics
-
Deus HF, Stanislaus R, Veiga DF, et al. A Semantic Web management model for integrative biomedical informatics. PLoS ONE 2008;3 e2946.
-
(2008)
PLoS ONE
, vol.3
-
-
Deus, H.F.1
Stanislaus, R.2
Veiga, D.F.3
-
14
-
-
33845209913
-
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
-
Neve RM, Chin K, Fridlyand J, et al. A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Cancer Cell 2006;10:515-27.
-
(2006)
Cancer Cell
, vol.10
, pp. 515-527
-
-
Neve, R.M.1
Chin, K.2
Fridlyand, J.3
-
15
-
-
34547172596
-
A transforming mutation in the pleckstrin homology domain of AKT1 in cancer
-
Carpten JD, Faber AL, Horn C, et al. A transforming mutation in the pleckstrin homology domain of AKT1 in cancer. Nature 2007; 448:439-44.
-
(2007)
Nature
, vol.448
, pp. 439-444
-
-
Carpten, J.D.1
Faber, A.L.2
Horn, C.3
-
16
-
-
18244384210
-
Multiple-laboratory comparison of microarray platforms
-
Irizarry RA, Warren D, Spencer F, et al. Multiple-laboratory comparison of microarray platforms. Nat Methods 2005;2: 345-50.
-
(2005)
Nat Methods
, vol.2
, pp. 345-350
-
-
Irizarry, R.A.1
Warren, D.2
Spencer, F.3
-
17
-
-
33646369893
-
Strategies for comparing gene expression profiles from different microarray platforms: Application to a case-control experiment
-
Severgnini M, Bicciato S, Mangano E, et al. Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment. Anal Biochem 2006;353 43-56.
-
(2006)
Anal Biochem
, vol.353
, pp. 43-56
-
-
Severgnini, M.1
Bicciato, S.2
Mangano, E.3
-
18
-
-
41649116922
-
Scaling of gene expression data allowing the comparison of different gene expression platforms
-
van Ruissen F, Schaaf GJ, Kool M, et al. Scaling of gene expression data allowing the comparison of different gene expression platforms. Methods Mol Biol 2008;387: 169-83.
-
(2008)
Methods Mol Biol
, vol.387
, pp. 169-183
-
-
van Ruissen, F.1
Schaaf, G.J.2
Kool, M.3
-
19
-
-
33847246805
-
Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
-
Rhodes DR, Kalyana-Sundaram S, Mahavisno V, et al. Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. Neoplasia 2007;9:166-80.
-
(2007)
Neoplasia
, vol.9
, pp. 166-180
-
-
Rhodes, D.R.1
Kalyana-Sundaram, S.2
Mahavisno, V.3
-
20
-
-
5444231422
-
Integration of biological sources: Current systems and challenges ahead
-
Hernandez T, Kambhampati S. Integration of biological sources: Current systems and challenges ahead. SIGMOD Rec 2004;33:51-60.
-
(2004)
SIGMOD Rec
, vol.33
, pp. 51-60
-
-
Hernandez, T.1
Kambhampati, S.2
-
21
-
-
52949085815
-
State of the nation in data integration for bioinformatics
-
Goble C, Stevens R. State of the nation in data integration for bioinformatics. J Biomed Inform 2008;41:687-93.
-
(2008)
J Biomed Inform
, vol.41
, pp. 687-693
-
-
Goble, C.1
Stevens, R.2
-
23
-
-
0034020917
-
STAR/mmCIF: An ontology for macromolecular structure
-
Westbrook JD, Bourne PE. STAR/mmCIF: An ontology for macromolecular structure. Bioinformatics 2000;16: 159-68.
-
(2000)
Bioinformatics
, vol.16
, pp. 159-168
-
-
Westbrook, J.D.1
Bourne, P.E.2
-
24
-
-
7244247242
-
The SRS 3D module: Integrating structures, sequences and features
-
O'Donoghue SI, Meyer JE, Schafferhans A, et al. The SRS 3D module: integrating structures, sequences and features. Bioinformatics 2004;20:2476-8.
-
(2004)
Bioinformatics
, vol.20
, pp. 2476-2478
-
-
O'Donoghue, S.I.1
Meyer, J.E.2
Schafferhans, A.3
-
25
-
-
18444373540
-
The Protein Data Bank: Unifying the archive
-
Westbrook J, Feng Z, Jain S, et al. The Protein Data Bank: unifying the archive. Nucleic Acids Res 2002;30:245-8.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 245-248
-
-
Westbrook, J.1
Feng, Z.2
Jain, S.3
-
27
-
-
4344592748
-
The impact of structural genomics on the protein data bank
-
Berman HM, Westbrook JD. The impact of structural genomics on the protein data bank. Am J Pharmacogenomics 2004;4:247-52.
-
(2004)
Am J Pharmacogenomics
, vol.4
, pp. 247-252
-
-
Berman, H.M.1
Westbrook, J.D.2
-
28
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
Berman H, Henrick K, Nakamura H, et al. The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data. Nucleic Acids Res 2007;35:D301-3.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
-
29
-
-
34249860996
-
LinkHub: A Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
-
Smith AK, Cheung KH, Yip KY, et al. LinkHub: A Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinformatics 2007;8(Suppl. 3):S5.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 3
-
-
Smith, A.K.1
Cheung, K.H.2
Yip, K.Y.3
-
30
-
-
48249158190
-
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
-
Belleau F, Nolin M-A, Tourigny N, et al. Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J Biomed Inform 2008; 41:706-16.
-
(2008)
J Biomed Inform
, vol.41
, pp. 706-716
-
-
Belleau, F.1
Nolin, M.-A.2
Tourigny, N.3
-
35
-
-
13444270892
-
The RCSB Protein Data Bank: A redesigned query system and relational database based on the mmCIF schema
-
Deshpande N, Addess KJ, Bluhm WF, et al. The RCSB Protein Data Bank: A redesigned query system and relational database based on the mmCIF schema. Nucleic Acids Res 2005;33:D233-7.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Deshpande, N.1
Addess, K.J.2
Bluhm, W.F.3
-
39
-
-
0242442735
-
The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface
-
Chen J, Zhao P, Massaro D, et al. The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface. Nucleic Acids Res 2004;32:D578-81.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Chen, J.1
Zhao, P.2
Massaro, D.3
-
40
-
-
0025489261
-
Federated database systems for managing distributed, heterogeneous, and autonomous databases
-
Sheth AP, Larson JA. Federated database systems for managing distributed, heterogeneous, and autonomous databases. ACM Comput Surv 1990;33:183-236.
-
(1990)
ACM Comput Surv
, vol.33
, pp. 183-236
-
-
Sheth, A.P.1
Larson, J.A.2
-
41
-
-
24044522270
-
BioMart and bioconductor: A powerful link between biological databases and microarray data analysis
-
Durinck S, Moreau Y, Kasprzyk A, et al. BioMart and bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 2005;21: 3439-40.
-
(2005)
Bioinformatics
, vol.21
, pp. 3439-3440
-
-
Durinck, S.1
Moreau, Y.2
Kasprzyk, A.3
-
42
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
Kasprzyk A, Keefe D, Smedley D, et al. EnsMart: A generic system for fast and flexible access to biological data. Genome Res 2004;14:160-9.
-
(2004)
Genome Res
, vol.14
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
-
45
-
-
58149157628
-
The PRIDE proteomics identifications database: Data submission, query, and dataset comparison
-
Jones P, Cote R. The PRIDE proteomics identifications database: Data submission, query, and dataset comparison. Methods Mol Biol 2008;484:287-303.
-
(2008)
Methods Mol Biol
, vol.484
, pp. 287-303
-
-
Jones, P.1
Cote, R.2
-
46
-
-
34250191844
-
Reactome: A knowledge base of biologic pathways and processes
-
Vastrik I, D'Eustachio P, Schmidt E, et al. Reactome: A knowledge base of biologic pathways and processes. Genome Biol 2007;8 R39.
-
(2007)
Genome Biol
, vol.8
-
-
Vastrik, I.1
D'Eustachio, P.2
Schmidt, E.3
-
48
-
-
63349099987
-
-
Berners-Lee T, RF, Masinter L. Uniform Resource Identifier URI, Generic Syntax
-
Berners-Lee T, RF, Masinter L. Uniform Resource Identifier (URI): Generic Syntax.
-
-
-
-
49
-
-
63349109726
-
Bechhofer S, van Harmelen F, Hendler J, Horrocks I, McGuinness D, Patel-Schneider P, Stein L
-
Dean M, Schreiber G eds
-
Dean M, Schreiber G (eds), Bechhofer S, van Harmelen F, Hendler J, Horrocks I, McGuinness D, Patel-Schneider P, Stein L. OWL web ontology language reference, 2004.
-
(2004)
OWL web ontology language reference
-
-
-
50
-
-
34249860439
-
Advancing translational research with the Semantic Web
-
Ruttenberg A, Clark T, Bug W, et al. Advancing translational research with the Semantic Web. BMC Bioinformatics 2007;8 (Suppl. 3):S2.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 3
-
-
Ruttenberg, A.1
Clark, T.2
Bug, W.3
-
51
-
-
48349143399
-
An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence
-
Sahoo SS, Bodenreider O, Rutter JL, et al. An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. J Biomed Inform 2008;41 752-65.
-
(2008)
J Biomed Inform
, vol.41
, pp. 752-765
-
-
Sahoo, S.S.1
Bodenreider, O.2
Rutter, J.L.3
-
53
-
-
41149160103
-
Biological data integration using Semantic Web technologies
-
Pasquier C. Biological data integration using Semantic Web technologies. Biochimie 2008;90:584-94.
-
(2008)
Biochimie
, vol.90
, pp. 584-594
-
-
Pasquier, C.1
-
54
-
-
52949109188
-
Combining semantic web technologies with multi-agent systems for integrated access to biological resources
-
Francisco G-S, Jesualdo TF-B, Rafael V-G, et al. Combining semantic web technologies with multi-agent systems for integrated access to biological resources. J Biomed Inform 2007;41:848-59.
-
(2007)
J Biomed Inform
, vol.41
, pp. 848-859
-
-
Francisco, G.-S.1
Jesualdo, T.F.-B.2
Rafael, V.-G.3
-
55
-
-
6044224544
-
Globally distributed object identification for biological knowledgebases
-
Clark SM, Liefeld T. Globally distributed object identification for biological knowledgebases. Brief Bioinform 2004;5: 59-70.
-
(2004)
Brief Bioinform
, vol.5
, pp. 59-70
-
-
Clark, S.M.1
Liefeld, T.2
-
56
-
-
20744457733
-
BACIIS: Biological and chemical integrated information system
-
Miled ZB, Li N, Bukhres O. BACIIS: Biological and chemical integrated information system. J Database Manage 2005;16:72-85.
-
(2005)
J Database Manage
, vol.16
, pp. 72-85
-
-
Miled, Z.B.1
Li, N.2
Bukhres, O.3
|