Building a structured PDB: The RS-PDB database

Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings

Volumn , Issue , 2006, Pages 5755-5758

  Szabadka, Zoltán ^a   Grolmusz, Vince ^a  

^a EÖTVÖS LORÁND UNIVERSITY   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMS; BOND LENGTH; COMPLEXATION; LIGANDS; PROTEINS;

ATOM BUMPS; CHEMICAL COMPONENT DICTIONARY; PROTEIN DATA BANK (PDB); PROTEIN LIGAND COMPLEXES;

DATABASE SYSTEMS;

HYDROGEN; LIGAND; PROTEIN;

ALGORITHM; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; INFORMATION SYSTEM; METHODOLOGY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DATABASE; PROTEOMICS; SEQUENCE ANALYSIS; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ALGORITHMS; CRYSTALLOGRAPHY, X-RAY; DATABASES, PROTEIN; HYDROGEN; INFORMATION SYSTEMS; LIGANDS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEINS; PROTEOMICS; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; X-RAY DIFFRACTION;

EID: 34047151231     PISSN: 05891019     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2006.259331     Document Type: Conference Paper

References (6)

1. H.M.Berman, J.Westbrook, Z.Feng, G.Gilliland, T.N.Bhat, H.Weissig, I.N.Shindyalov, P.E.Bourne The Protein Data Bank Nucleic Acids Research, 28 pp. 235-242 (2000)
2. Z. Szabadka, V. Grolmusz: High Throughput Processing of the Structural Information of the Protein Data Bank, DIMACS Workshop on Information Processing by Protein Structures in Molecular Recognition, June 13-14, 2005, DIMACS Center, Rutgers University
3. http://www.iupac.org/inchi/index.html
4. The PDB Chemical Component Dictionary (formerly the Het Group Dictionary) is available at http://deposit.pdb.org/public-component-erf.cif.
5. Wang et. al, The PDBbind Database: Methodologies and Updates, J. Med. Chem., 2005
6. Wang et al., The PDBbind Database: Collection of Binding Affinities for Protein-Ligand Complexes with Known Three-Dimensional Structures, J. Med. Chem., 2004