The SRS 3D module: Integrating structures, sequences and features

Bioinformatics

Volumn 20, Issue 15, 2004, Pages 2476-2478

  O'Donoghue, Seán I ^a,b   Meyer, Joachim E W ^a   Schafferhans, Andrea ^a   Fries, Karsten ^a  

^a Axaron Bioscience AG   (Germany)

^b Cay Labs   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; INFORMATION SYSTEM; PEPTIDE MAPPING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

EID: 7244247242     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth260     Document Type: Article

References (8)

1. Apweiler,R., Attwood,T.K., Bairoch,A., Bateman,A., Birney,E., Biswas,M., Bucher,P., Cerutti,L., Corpet,F., Goning,M.D. et al. (2001) InterPro - an integrated documentation resource for protein families, domains and functional sites. Bioinformatics, 16, 1145-1150.
2. Apweiler,R., Bairoch,A., Wu.C.H., Barker,W.C., Boeckmann,B., Ferro,S., Gasteiger,E., Huang,H., Lopez,R., Margrame,M. et al. (2004) UniProt: the universal protein knowledgebase. Nucleic Acids Res., 32, D115-D119.
3. Berman,H.M., Westbrook,J., Feng.Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
4. Chen,J., Anderson,J.B., Deweese-Scott,C., Fedorova,N.D., Geer,L.Y., He,S., Hurwitz,D.T., Jackson,J.D., Jacobs,A.R. et al. (2003) MMDB: Entrez's 3D-structure database. Nucleic Acids Res., 31, 474-477.
5. Etzold,T., Ulyanov,A. and Argos,P. (1996) SRS: information retrieval system for molecular biology data banks. In: Doolittle,R.F. (ed.), Methods in Enzymology. Academic Press, San Diego, Vol. 266, pp. 114-128.
6. Fries,K. and O'Donoghue,S.I. (2002) Navigating around the building blocks of life. Adv. Imag., 17, 18-19, 39.
7. Sander,C. and Schneider,R. (1991) Database of homology-derived structures and the structural meaning of sequence alignment. Proteins, 9, 56-68.
8. Schafferhans,A., Meyer,J.E.W. and O'Donoghue,S.I. (2003) The PSSH database of alignments between protein sequences and tertiary structures. Nucleic Acids Res., 31, 494-498.