Phylogenetic analysis and molecular evolution of guanine deaminases: From guanine to dendrites

Journal of Molecular Evolution

Volumn 68, Issue 3, 2009, Pages 227-235

  Fernández, José R ^a,b   Byrne, Bruce ^b   Firestein, Bonnie L ^a  

^a State University of New Jersey   (United States)

^b UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY   (United States)

Author keywords

Cypin; Dendrite branching; Guanine deaminase; Neuronal development; PDZ binding domain; Zinc binding domain

Indexed keywords

ANIMALS; CARRIER PROTEINS; CONSERVED SEQUENCE; DENDRITES; EUKARYOTIC CELLS; EVOLUTION, MOLECULAR; GUANINE; GUANINE DEAMINASE; HUMANS; NERVE TISSUE PROTEINS; PHYLOGENY; PROKARYOTIC CELLS; PROTEIN INTERACTION DOMAINS AND MOTIFS; RATS; ZINC;

EUKARYOTA; MAMMALIA; PROKARYOTA;

EID: 62949134540     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-009-9205-x     Document Type: Article

References (33)

1. BF Akum M Chen SI Gunderson GM Riefler MM Scerri-Hansen BL Firestein 2004 Cypin regulates dendrite patterning in hippocampal neurons by promoting microtubule assembly Nat Neurosci 7 145 152
2. U Bergthorsson DI Andersson JR Roth 2007 Ohno's dilemma: evolution of new genes under continuous selection Proc Natl Acad Sci USA 104 17004 17009
3. HM Berman J Westbrook Z Feng G Gilliland TN Bhat H Weissig IN Shindyalov PE Bourne 2000 The protein data bank Nucleic Acids Res 28 235 242
4. EI Charych BF Akum JS Goldberg RJ Jörnsten C Rongo JQ Zheng BL Firestein 2006 Activity-independent regulation of dendrite patterning by postsynaptic density protein PSD-95 J Neurosci 26 40 10164 10176
5. H Chen BL Firestein 2007 RhoA regulates dendrite branching in hippocampal neurons by decreasing cypin protein levels J Neurosci 27 8378 8386
6. M Chen KG Lucas BF Akum G Balasingam TM Stawicki JM Provost GM Riefler RJ Jornsten BL Firestein 2005 A novel role for snapin in dendrite patterning: interaction with cypin Mol Biol Cell 16 5103 5114
7. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
8. JR Fernandez WJ Welsh BL Firestein 2008 Structural characterization of the zinc binding domain in cytosolic PSD-95 interactor (cypin): role of zinc binding in guanine deamination and dendrite branching Proteins 70 873 881
9. BL Firestein JE Brenman C Aoki AM Sanchez-Perez AE El-Husseini DS Bredt 1999 Cypin: a cytosolic regulator of PSD-95 postsynaptic targeting Neuron 24 659 672
10. PJ Fogle AL Bieber 1975 Purification of rabbit liver guanine aminohydrolase Prep Biochem 5 59 77
11. JM Galilea EI Canela J Bozal 1981 Characterization of bovine liver guanine aminohydrolase Int J Biochem 13 773 776
12. Haldane JBS (1932) The causes of evolution. Cornell University Press, Ithaca, NY
13. M Kimura T Ota 1974 On some principles governing molecular evolution Proc Natl Acad Sci USA 71 2848 2852
14. S Kumar KK Tewari PS Krishnan 1965 Guanine-deaminase activity in rat brain and liver Biochem J 95 797 802
15. MA Larkin G Blackshields NP Brown R Chenna PA McGettigan H McWilliam F Valentin IM Wallace A Wilm R Lopez JD Thompson TJ Gibson DG Higgins 2007 ClustalW and ClustalX version 2 Bioinformatics 23 2947 2948
16. SF Lee M Kelly A McAlister SN Luck EL Garcia RA Hall RM Robins-Browne G Frankel EL Hartland 2008 A C-terminal class I PDZ binding motif of EspI/NleA modulates the virulence of attaching and effacing Escherichia coli and Citrobacter rodentium Cell Microbiol 10 2 499 513
17. SH Liaw YJ Chang CT Lai HC Chang GG Chang 2004 Crystal structure of Bacillus subtilis guanine deaminase: the first domain-swapped structure in the cytidine deaminase superfamily J Biol Chem 279 35479 35485
18. JT Maynes RG Yuan FF Snyder 2000 Identification, expression, and characterization of Escherichia coli guanine deaminase J Bacteriol 182 4658 4660
19. P Nygaard SM Bested KA Andersen HH Saxild 2000 Bacillus subtilis guanine deaminase is encoded by the yknA gene and is induced during growth with purines as the nitrogen source Microbiology 146 Pt 12 3061 3069
20. HJ Muller 1936 Bar duplication Science 83 528 530
21. RF Paletzki 2002 Cloning and characterization of guanine deaminase from mouse and rat brain Neuroscience 109 15 26
22. CP Ponting C Phillips KE Davies DJ Blake 1997 PDZ domains: targeting signalling molecules to sub-membranous sites Bioessays 19 469 479
23. K Prodanov S Jerev 1971 "Discharge" of guanine deaminase from the dog's lung Nauchni Tr Vissh Med Inst Sofiia 50 57 60
24. CA Rossi G Hakim G Solaini 1978 Purification and properties of pig brain guanine deaminase Biochim Biophys Acta 526 235 246
25. C Saint-Marc B Daignan-Fornier 2004 GUD1 (YDL238c) encodes Saccharomyces cerevisiae guanine deaminase, an enzyme expressed during post-diauxic growth Yeast 21 1359 1363
26. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
27. M Sheng C Sala 2001 PDZ domains and the organization of supramolecular complexes Annu Rev Neurosci 24 1 29
28. J Sohn RA Grant RT Sauer 2007 Allosteric activation of DegS, a stress sensor PDZ protease Cell 131 3 572 583
29. Sokal RR, Sneath PHA (1973) Principles of numerical taxonomy. Freeman, New York
30. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
31. L Yao RI Cukier H Yan 2007 Catalytic mechanism of guanine deaminase: an ONIOM and molecular dynamics study J Phys Chem B 111 4200 4210
32. G Yuan JC Bin DJ McKay FF Snyder 1999 Cloning and characterization of human guanine deaminase. Purification and partial amino acid sequence of the mouse protein J Biol Chem 274 8175 8180
33. E Zuckerkandl L Pauling 1965