-
1
-
-
4243754128
-
Nonequilibrium equality for free energy differences
-
Jarzynski, C., Nonequilibrium equality for free energy differences, Phys. Rev. Lett. 1997, 78, 2690-2693
-
(1997)
Phys. Rev. Lett
, vol.78
, pp. 2690-2693
-
-
Jarzynski, C.1
-
2
-
-
4244116139
-
Equilibrium free energy differences from nonequilibrium measurements. A master-equation approach
-
Jarzynski, C., Equilibrium free energy differences from nonequilibrium measurements. A master-equation approach, Phys. Rev. E 1997, 56, 5018-5035
-
(1997)
Phys. Rev. E
, vol.56
, pp. 5018-5035
-
-
Jarzynski, C.1
-
3
-
-
0035957434
-
Free energy reconstruction from nonequilibrium single-molecule pulling experiments
-
Hummer, G.; Szabo, A., Free energy reconstruction from nonequilibrium single-molecule pulling experiments, Proc. Natl Acad. Sci. USA 2001, 98, 3658-3661
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 3658-3661
-
-
Hummer, G.1
Szabo, A.2
-
4
-
-
0037036070
-
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality
-
Liphardt, J.; Dumont, S.; Smith, S. B.; Tinoco, I.; Bustamante, C., Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality, Science 2002, 296, 1832-1835
-
(2002)
Science
, vol.296
, pp. 1832-1835
-
-
Liphardt, J.1
Dumont, S.2
Smith, S.B.3
Tinoco, I.4
Bustamante, C.5
-
5
-
-
10944270141
-
Direct determination of the equilibrium unbinding potential profile for a short DNA duplex from force spectroscopy data
-
Noy, A., Direct determination of the equilibrium unbinding potential profile for a short DNA duplex from force spectroscopy data, Appl. Phys. Lett. 2004, 85, 4792-4794
-
(2004)
Appl. Phys. Lett
, vol.85
, pp. 4792-4794
-
-
Noy, A.1
-
6
-
-
6344259981
-
Experimental test of Hatano and Sasa's nonequilibrium steady-state equality
-
Trepagnier, E. H.; Jarzynski, C.; Ritort, F.; Crooks, G. E.; Bustamante, C. J.; Liphardt, J., Experimental test of Hatano and Sasa's nonequilibrium steady-state equality, Proc. Natl Acad. Sci. USA 2004, 101, 15038-15041
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 15038-15041
-
-
Trepagnier, E.H.1
Jarzynski, C.2
Ritort, F.3
Crooks, G.E.4
Bustamante, C.J.5
Liphardt, J.6
-
7
-
-
34250928962
-
Volumen und Hydratationswärme der Ionen
-
Born, M., Volumen und Hydratationswärme der Ionen, Z. Phys. 1920, 1, 45-48
-
(1920)
Z. Phys
, vol.1
, pp. 45-48
-
-
Born, M.1
-
8
-
-
0344227487
-
Thermodynamics of cavity formation in water. A molecular dynamics study
-
Postma, J. P. M.; Berendsen, H. J. C.; Haak, J. R., Thermodynamics of cavity formation in water. A molecular dynamics study, Faraday Symp. Chem. Soc. 1982, 17, 55
-
(1982)
Faraday Symp. Chem. Soc
, vol.17
, pp. 55
-
-
Postma, J.P.M.1
Berendsen, H.J.C.2
Haak, J.R.3
-
9
-
-
36549104841
-
Free energy of hydrophobic hydration. A molecular dynamics study of noble gases in water
-
Straatsma, T. P.; Berendsen, H. J. C.; Postma, J. P. M., Free energy of hydrophobic hydration. A molecular dynamics study of noble gases in water, J. Chem. Phys. 1986, 85, 6720-6727
-
(1986)
J. Chem. Phys
, vol.85
, pp. 6720-6727
-
-
Straatsma, T.P.1
Berendsen, H.J.C.2
Postma, J.P.M.3
-
10
-
-
0001489180
-
Systematic errors in free energy perturbation calculations due to a finite sample of configuration space. Sample-size hysteresis
-
Wood, R. H.; Mühlbauer, W. C. F.; Thompson, P. T., Systematic errors in free energy perturbation calculations due to a finite sample of configuration space. Sample-size hysteresis, J. Phys. Chem. 1991, 95, 6670-6675
-
(1991)
J. Phys. Chem
, vol.95
, pp. 6670-6675
-
-
Wood, R.H.1
Mühlbauer, W.C.F.2
Thompson, P.T.3
-
11
-
-
6944235692
-
Simple analysis of noise and hysteresis in (slow-growth) free energy simulations
-
Hermans, J., Simple analysis of noise and hysteresis in (slow-growth) free energy simulations, J. Phys. Chem. 1991, 95, 9029-9032
-
(1991)
J. Phys. Chem
, vol.95
, pp. 9029-9032
-
-
Hermans, J.1
-
12
-
-
36849122972
-
High-temperature equation of state by a perturbation method. I. Nonpolar gases
-
Zwanzig, R. W., High-temperature equation of state by a perturbation method. I. Nonpolar gases, J. Chem. Phys. 1954, 22, 1420-1426
-
(1954)
J. Chem. Phys
, vol.22
, pp. 1420-1426
-
-
Zwanzig, R.W.1
-
13
-
-
17444372741
-
Biased sampling of nonequilibrium trajectories. Can fast switching simulations outperform conventional free energy calculation methods
-
Oberhofer, H.; Dellago, C.; Geissler, P. L., Biased sampling of nonequilibrium trajectories. Can fast switching simulations outperform conventional free energy calculation methods, J. Phys. Chem. B 2005, 109, 6902-6915
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 6902-6915
-
-
Oberhofer, H.1
Dellago, C.2
Geissler, P.L.3
-
15
-
-
23744478437
-
Free energy surfaces from single-molecule force spectroscopy
-
Hummer, G.; Szabo, A., Free energy surfaces from single-molecule force spectroscopy, Acc. Chem. Res. 2005, 38, 504-513
-
(2005)
Acc. Chem. Res
, vol.38
, pp. 504-513
-
-
Hummer, G.1
Szabo, A.2
-
16
-
-
0000186593
-
Path-ensemble averages in systems driven far from equilibrium
-
Crooks, G. E., Path-ensemble averages in systems driven far from equilibrium, Phys. Rev. E 2000, 61, 2361-2366
-
(2000)
Phys. Rev. E
, vol.61
, pp. 2361-2366
-
-
Crooks, G.E.1
-
17
-
-
18344406027
-
Steady-state thermodynamics of Langevin systems
-
Hatano, T.; Sasa, S., Steady-state thermodynamics of Langevin systems, Phys. Rev. Lett. 2001, 86, 3463-3466
-
(2001)
Phys. Rev. Lett
, vol.86
, pp. 3463-3466
-
-
Hatano, T.1
Sasa, S.2
-
18
-
-
0032023968
-
Nonequilibrium measurements of free energy differences for microscopically reversible Markovian systems
-
Crooks, G. E., Nonequilibrium measurements of free energy differences for microscopically reversible Markovian systems, J. Stat. Phys. 1998, 90, 1481-1487
-
(1998)
J. Stat. Phys
, vol.90
, pp. 1481-1487
-
-
Crooks, G.E.1
-
19
-
-
0000765761
-
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences
-
Crooks, G. E., Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences, Phys. Rev. E 1999, 60, 2721-2726
-
(1999)
Phys. Rev. E
, vol.60
, pp. 2721-2726
-
-
Crooks, G.E.1
-
20
-
-
0035333627
-
Fast-growth thermodynamic integration error and efficiency analysis
-
Hummer, G., Fast-growth thermodynamic integration error and efficiency analysis, J. Chem. Phys. 2001, 114, 7330-7337
-
(2001)
J. Chem. Phys
, vol.114
, pp. 7330-7337
-
-
Hummer, G.1
-
21
-
-
5244304444
-
Efficient estimation of free energy differences from Monte Carlo data
-
Bennett, C. H., Efficient estimation of free energy differences from Monte Carlo data, J. Comput. Phys. 1976, 22, 245-268
-
(1976)
J. Comput. Phys
, vol.22
, pp. 245-268
-
-
Bennett, C.H.1
-
22
-
-
0242677537
-
Equilibrium free energies from nonequilibrium measurements using maximum-likelihood methods
-
Shirts, M. R.; Bair, E.; Hooker, G.; Pande, V. S., Equilibrium free energies from nonequilibrium measurements using maximum-likelihood methods, Phys. Rev. Lett. 2003, 91, 140601
-
(2003)
Phys. Rev. Lett
, vol.91
, pp. 140601
-
-
Shirts, M.R.1
Bair, E.2
Hooker, G.3
Pande, V.S.4
-
23
-
-
23944432199
-
Comparison of efficiency and bias of free energies computed by exponential averaging. The Bennett acceptance ratio and thermodynamic integration
-
Shirts, M. R.; Pande, V. S., Comparison of efficiency and bias of free energies computed by exponential averaging. The Bennett acceptance ratio and thermodynamic integration, J. Chem. Phys. 2005, 122, 144107
-
(2005)
J. Chem. Phys
, vol.122
, pp. 144107
-
-
Shirts, M.R.1
Pande, V.S.2
-
25
-
-
31544454748
-
Equilibrium free energies from fast-switching trajectories with large time steps
-
Lechner, W.; Oberhofer, H.; Dellago, C.; Geissler, P. L., Equilibrium free energies from fast-switching trajectories with large time steps, J. Chem. Phys. 2006, 124, 044113
-
(2006)
J. Chem. Phys
, vol.124
, pp. 044113
-
-
Lechner, W.1
Oberhofer, H.2
Dellago, C.3
Geissler, P.L.4
-
26
-
-
0000464094
-
Variational path optimization and upper and lower bounds for the free energy via finite time minimization of the external work
-
Reinhardt, W. P.; Hunter III, J. E., Variational path optimization and upper and lower bounds for the free energy via finite time minimization of the external work, J. Chem. Phys. 1992, 97, 1599-1601
-
(1992)
J. Chem. Phys
, vol.97
, pp. 1599-1601
-
-
Reinhardt, W.P.1
Hunter III, J.E.2
-
27
-
-
0034322921
-
Efficient free energy calculations by variationally optimized metric scaling concepts and applications to the volume dependence of cluster free energies and to solid-solid phase transitions
-
Miller, M. A.; Reinhardt, W. P., Efficient free energy calculations by variationally optimized metric scaling concepts and applications to the volume dependence of cluster free energies and to solid-solid phase transitions, J. Chem. Phys. 2000, 113, 7035-7046
-
(2000)
J. Chem. Phys
, vol.113
, pp. 7035-7046
-
-
Miller, M.A.1
Reinhardt, W.P.2
-
28
-
-
18744387720
-
Reaction coordinates and rates from transition paths
-
Best, R. B.; Hummer, G., Reaction coordinates and rates from transition paths, Proc. Natl Acad. Sci. USA 2005, 102, 6732-6737
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 6732-6737
-
-
Best, R.B.1
Hummer, G.2
-
29
-
-
33748374124
-
Statistical mechanics of isomerization dynamics in liquids and the transition state approximation
-
Chandler, D., Statistical mechanics of isomerization dynamics in liquids and the transition state approximation, J. Chem. Phys. 1978, 68, 2959-2970
-
(1978)
J. Chem. Phys
, vol.68
, pp. 2959-2970
-
-
Chandler, D.1
-
30
-
-
0842311640
-
From transition paths to transition states and rate coefficients
-
Hummer, G., From transition paths to transition states and rate coefficients, J. Chem. Phys. 2004, 120, 516-523
-
(2004)
J. Chem. Phys
, vol.120
, pp. 516-523
-
-
Hummer, G.1
-
31
-
-
33645666178
-
Rare events and the convergence of exponentially averaged work values
-
Jarzynski, C., Rare events and the convergence of exponentially averaged work values, Phys. Rev. E 2006, 73, 046105
-
(2006)
Phys. Rev. E
, vol.73
, pp. 046105
-
-
Jarzynski, C.1
-
32
-
-
0001927132
-
Free-energy computation and first-order phase transitions. In Molecular Dynamics Simulations of Statistical Mechanical Systems
-
Ciccotti, G, Hoover, W. G, Eds, North-Holland, pp
-
Frenkel, D., Free-energy computation and first-order phase transitions. In Molecular Dynamics Simulations of Statistical Mechanical Systems. Proceedings of the Enrico Fermi Summer School, Varenna, 1985 (Amsterdam, 1986), Ciccotti, G.; Hoover, W. G., Eds., North-Holland, pp. 151-188
-
Proceedings of the Enrico Fermi Summer School, Varenna, 1985 (Amsterdam, 1986)
, pp. 151-188
-
-
Frenkel, D.1
-
33
-
-
0242268467
-
Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
-
Gore, J.; Ritort, F.; Bustamante, C., Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements, Proc. Natl Acad. Sci. USA 2003, 100, 12564-12569
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12564-12569
-
-
Gore, J.1
Ritort, F.2
Bustamante, C.3
-
34
-
-
18744379822
-
Theory of a systematic computational error in free energy differences
-
Zuckerman, D. M.; Woolf, T. B., Theory of a systematic computational error in free energy differences, Phys. Rev. Lett. 2002, 89, 180602
-
(2002)
Phys. Rev. Lett
, vol.89
, pp. 180602
-
-
Zuckerman, D.M.1
Woolf, T.B.2
-
35
-
-
37649029489
-
Asymmetric bias in free-energy perturbation measurements using two Hamiltonian-based models
-
Wu, D.; Kofke, D. A., Asymmetric bias in free-energy perturbation measurements using two Hamiltonian-based models, Phys. Rev. E 2004, 70, 066702
-
(2004)
Phys. Rev. E
, vol.70
, pp. 066702
-
-
Wu, D.1
Kofke, D.A.2
-
36
-
-
0037122460
-
Overcoming finite-sampling errors in fast-switching free-energy estimates. Extrapolative analysis of a molecular system
-
Zuckerman, D. M.; Woolf, T. B., Overcoming finite-sampling errors in fast-switching free-energy estimates. Extrapolative analysis of a molecular system, Chem. Phys. Lett. 2002, 351, 445-453
-
(2002)
Chem. Phys. Lett
, vol.351
, pp. 445-453
-
-
Zuckerman, D.M.1
Woolf, T.B.2
-
37
-
-
5444249356
-
Efficient use of nonequilibrium measurement to estimate free energy differences for molecular systems
-
Ytreberg, F. M.; Zuckerman, D. M., Efficient use of nonequilibrium measurement to estimate free energy differences for molecular systems, J. Comp. Chem. 2004, 25, 1749-1759
-
(2004)
J. Comp. Chem
, vol.25
, pp. 1749-1759
-
-
Ytreberg, F.M.1
Zuckerman, D.M.2
-
38
-
-
1642617408
-
Assessing the efficiency of free energy calculation methods
-
Rodriguez-Gomez, D.; Darve, E.; Pohorille, A., Assessing the efficiency of free energy calculation methods, J. Chem. Phys. 2004, 120, 3563-3578
-
(2004)
J. Chem. Phys
, vol.120
, pp. 3563-3578
-
-
Rodriguez-Gomez, D.1
Darve, E.2
Pohorille, A.3
-
39
-
-
0242364982
-
Calculation of free energy differences from computer simulations of initial and final states
-
Hummer, G.; Szabo, A., Calculation of free energy differences from computer simulations of initial and final states, J. Chem. Phys. 1996, 105, 2004-2010
-
(1996)
J. Chem. Phys
, vol.105
, pp. 2004-2010
-
-
Hummer, G.1
Szabo, A.2
-
40
-
-
0030059225
-
Ligand binding molecular mechanics calculation of the streptavidin biotin rupture force
-
Grubmüller, H.; Heymann, B.; Tavan, P., Ligand binding molecular mechanics calculation of the streptavidin biotin rupture force, Science 1996, 271, 997-999
-
(1996)
Science
, vol.271
, pp. 997-999
-
-
Grubmüller, H.1
Heymann, B.2
Tavan, P.3
-
41
-
-
0030987036
-
Molecular dynamics study of unbinding of the avidin-biotin complex
-
Izrailev, S.; Stepaniants, S.; Balsera, M.; Oono, Y.; Schulten, K., Molecular dynamics study of unbinding of the avidin-biotin complex, Biophys. J. 1997, 72, 1568-1581
-
(1997)
Biophys. J
, vol.72
, pp. 1568-1581
-
-
Izrailev, S.1
Stepaniants, S.2
Balsera, M.3
Oono, Y.4
Schulten, K.5
-
42
-
-
0033531973
-
Forced unfolding of fibronectin type 3 modules. An analysis by biased molecular dynamics simulations
-
Paci, E.; Karplus, M., Forced unfolding of fibronectin type 3 modules. An analysis by biased molecular dynamics simulations, J. Mol. Biol. 1999, 288, 441-459
-
(1999)
J. Mol. Biol
, vol.288
, pp. 441-459
-
-
Paci, E.1
Karplus, M.2
-
43
-
-
4143087050
-
Calculating potentials of mean force from steered molecular dynamics simulations
-
Park, S.; Schulten, K., Calculating potentials of mean force from steered molecular dynamics simulations, J. Chem. Phys. 2004, 120, 5946-5961
-
(2004)
J. Chem. Phys
, vol.120
, pp. 5946-5961
-
-
Park, S.1
Schulten, K.2
-
44
-
-
33646987405
-
Optimized Monte Carlo data analysis
-
Ferrenberg, A. M.; Swendsen, R. H., Optimized Monte Carlo data analysis, Phys. Rev. Lett. 1989, 63, 1195-1198
-
(1989)
Phys. Rev. Lett
, vol.63
, pp. 1195-1198
-
-
Ferrenberg, A.M.1
Swendsen, R.H.2
-
45
-
-
0042885340
-
Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality
-
Park, S.; Khalili-Araghi, F.; Tajkhorshid, E.; Schulten, K., Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality, J. Chem. Phys. 2003, 119, 3559-3566
-
(2003)
J. Chem. Phys
, vol.119
, pp. 3559-3566
-
-
Park, S.1
Khalili-Araghi, F.2
Tajkhorshid, E.3
Schulten, K.4
-
46
-
-
0037398346
-
Equilibrium free energies from path sampling of nonequilibrium trajectories
-
Sun, S. X., Equilibrium free energies from path sampling of nonequilibrium trajectories, J. Chem. Phys. 2003, 118, 5769-5775
-
(2003)
J. Chem. Phys
, vol.118
, pp. 5769-5775
-
-
Sun, S.X.1
-
47
-
-
3042688939
-
Single-ensemble nonequilibrium path-sampling estimates of free energy differences
-
Ytreberg, F. M.; Zuckerman, D. M., Single-ensemble nonequilibrium path-sampling estimates of free energy differences, J. Chem. Phys. 2004, 120, 10876-10879
-
(2004)
J. Chem. Phys
, vol.120
, pp. 10876-10879
-
-
Ytreberg, F.M.1
Zuckerman, D.M.2
-
48
-
-
0035826435
-
A fast growth method of computing free energy differences
-
Hendrix, D. A.; Jarzynski, C., A fast growth method of computing free energy differences, J. Chem. Phys. 2001, 114, 5974-5981
-
(2001)
J. Chem. Phys
, vol.114
, pp. 5974-5981
-
-
Hendrix, D.A.1
Jarzynski, C.2
-
49
-
-
0002291676
-
Fast-growth thermodynamic integration results for sodium ion hydration
-
Hummer, G., Fast-growth thermodynamic integration results for sodium ion hydration, Mol. Simul. 2002, 28, 81-90
-
(2002)
Mol. Simul
, vol.28
, pp. 81-90
-
-
Hummer, G.1
-
50
-
-
0042531222
-
Reversibility of free energy simulations slow growth may have a unique advantage with a note on use of Ewald summation
-
Hu, H.; Yun, R. H.; Hermans, J., Reversibility of free energy simulations slow growth may have a unique advantage with a note on use of Ewald summation, Mol. Simul. 2002, 28, 67-80
-
(2002)
Mol. Simul
, vol.28
, pp. 67-80
-
-
Hu, H.1
Yun, R.H.2
Hermans, J.3
-
51
-
-
0035935802
-
Calculating free energies using average force
-
Darve, E.; Pohorille, A., Calculating free energies using average force, J. Chem. Phys. 2001, 115, 9169-9183
-
(2001)
J. Chem. Phys
, vol.115
, pp. 9169-9183
-
-
Darve, E.1
Pohorille, A.2
-
52
-
-
0033523904
-
Mechanical unfolding intermediates in titin modules
-
Marszalek, P. E.; Lu, H.; Li, H. B.; Carrion-Vazquez, M.; Oberhauser, A. F.; Schulten, K.; Fernandez, J. M., Mechanical unfolding intermediates in titin modules, Nature 1999, 402, 100-103
-
(1999)
Nature
, vol.402
, pp. 100-103
-
-
Marszalek, P.E.1
Lu, H.2
Li, H.B.3
Carrion-Vazquez, M.4
Oberhauser, A.F.5
Schulten, K.6
Fernandez, J.M.7
-
53
-
-
0037076420
-
Energetics of glycerol conduction through aquaglyceroporin glpf
-
Jensen, M. O.; Park, S.; Tajkhorshid, E.; Schulten, K., Energetics of glycerol conduction through aquaglyceroporin glpf, Proc. Natl Acad. Sci. USA 2002, 99, 6731-6736
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 6731-6736
-
-
Jensen, M.O.1
Park, S.2
Tajkhorshid, E.3
Schulten, K.4
-
54
-
-
8644260166
-
Molecular dynamics simulations of substrate channeling through an alpha-beta barrel protein
-
Amaro, R.; Luthey-Schulten, Z., Molecular dynamics simulations of substrate channeling through an alpha-beta barrel protein, Chem. Phys. 2004, 307, 147-155
-
(2004)
Chem. Phys
, vol.307
, pp. 147-155
-
-
Amaro, R.1
Luthey-Schulten, Z.2
-
55
-
-
4344714435
-
Quantum extension of the Jarzynski relation analogy with stochastic dephasing
-
Mukamel, S., Quantum extension of the Jarzynski relation analogy with stochastic dephasing, Phys. Rev. Lett. 2003, 90, 170604
-
(2003)
Phys. Rev. Lett
, vol.90
, pp. 170604
-
-
Mukamel, S.1
-
56
-
-
3242655723
-
Classical and quantum fluctuation theorems for heat exchange
-
Jarzynski, C.; Wojcik, D. K., Classical and quantum fluctuation theorems for heat exchange, Phys. Rev. Lett. 2004, 92, 230602
-
(2004)
Phys. Rev. Lett
, vol.92
, pp. 230602
-
-
Jarzynski, C.1
Wojcik, D.K.2
-
57
-
-
37649030819
-
Quantum version of free-energy-irreversible-work relations
-
De Roeck, W.; Maes, C., Quantum version of free-energy-irreversible-work relations, Phys. Rev. E 2004, 69, 026115
-
(2004)
Phys. Rev. E
, vol.69
, pp. 026115
-
-
De Roeck, W.1
Maes, C.2
-
58
-
-
10844282657
-
Equilibrium free energy estimates based on nonequilibrium work relations and extended dynamics
-
Atilgan, E.; Sun, S. X., Equilibrium free energy estimates based on nonequilibrium work relations and extended dynamics, J. Chem. Phys. 2004, 121, 10392-10400
-
(2004)
J. Chem. Phys
, vol.121
, pp. 10392-10400
-
-
Atilgan, E.1
Sun, S.X.2
-
59
-
-
19944364561
-
Peptide conformational equilibria computed via a single-stage shifting protocol
-
Ytreberg, F. M.; Zuckerman, D. M., Peptide conformational equilibria computed via a single-stage shifting protocol, J. Phys. Chem. B 2005, 109, 9096-9103
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 9096-9103
-
-
Ytreberg, F.M.1
Zuckerman, D.M.2
-
60
-
-
41349113029
-
Dynamical generalization of nonequilibrium work relation
-
Chernyak, V.; Chertkov, M.; Jarzynski, C., Dynamical generalization of nonequilibrium work relation, Phys. Rev. E 2005, 71, 025102
-
(2005)
Phys. Rev. E
, vol.71
, pp. 025102
-
-
Chernyak, V.1
Chertkov, M.2
Jarzynski, C.3
-
61
-
-
17044382128
-
Enhancing the accuracy the efficiency and the scope of free energy simulations
-
Rodinger, T.; Pomès, R., Enhancing the accuracy the efficiency and the scope of free energy simulations, Curr. Opin. Struct. Biol. 2005, 15, 164-170
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 164-170
-
-
Rodinger, T.1
Pomès, R.2
-
62
-
-
17444397727
-
Optimizing the driving function for nonequilibrium free-energy calculations in the linear regime. A variational approach
-
De Koning, M., Optimizing the driving function for nonequilibrium free-energy calculations in the linear regime. A variational approach, J. Chem. Phys. 2005, 122, 104106
-
(2005)
J. Chem. Phys
, vol.122
, pp. 104106
-
-
De Koning, M.1
-
63
-
-
17444396742
-
Practical applicability of the Jarzynski relation in statistical mechanics. A pedagogical example
-
Lua, R. C.; Grosberg, A. Y., Practical applicability of the Jarzynski relation in statistical mechanics. A pedagogical example, J. Phys. Chem. B 2005, 109, 6805-6811
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 6805-6811
-
-
Lua, R.C.1
Grosberg, A.Y.2
-
64
-
-
33244455901
-
Entropy and density of states from isoenergetic nonequilibrium processes
-
Adib, A. B., Entropy and density of states from isoenergetic nonequilibrium processes, Phys. Rev. E 2005, 71, 056128
-
(2005)
Phys. Rev. E
, vol.71
, pp. 056128
-
-
Adib, A.B.1
-
65
-
-
24644450199
-
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
-
Collin, D.; Ritort, F.; Jarzynski, C.; Smith, S.B.; Tinoco, I.; Bustamante, C. Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies. Nature 2005, 437, 231-234
-
(2005)
Nature
, vol.437
, pp. 231-234
-
-
Collin, D.1
Ritort, F.2
Jarzynski, C.3
Smith, S.B.4
Tinoco, I.5
Bustamante, C.6
|