Environmental shaping of ribosomal rna nucleotide composition

Microbial Ecology

Volumn 57, Issue 3, 2009, Pages 469-477

  Rudi, Knut ^a,b  

^a INLAND NORWAY UNIVERSITY OF APPLIED SCIENCES   (Norway)

^b NOFIMA   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBOSOME RNA;

ANALYSIS OF VARIANCE; ARTICLE; BACTERIUM; CLASSIFICATION; DNA BASE COMPOSITION; ECOSYSTEM; ENVIRONMENT; GENETICS; MULTIVARIATE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; REGRESSION ANALYSIS; SEQUENCE ANALYSIS;

ANALYSIS OF VARIANCE; BACTERIA; BASE COMPOSITION; ECOSYSTEM; ENVIRONMENT; MULTIVARIATE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; REGRESSION ANALYSIS; RNA, BACTERIAL; RNA, RIBOSOMAL; SEQUENCE ANALYSIS, RNA;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); FIRMICUTES; PROTEOBACTERIA;

EID: 62749130853     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-008-9446-z     Document Type: Article

References (14)

1. PA Aas M Otterlei PO Falnes CB Vagbo F Skorpen M Akbari O Sundheim M Bjoras G Slupphaug E Seeberg HE Krokan 2003 Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA Nature 421 859 863
2. S Blume J Lebowitz W Zacharias V Guarcello C Mayfield S Ebbinghaus P Bates D Jones Jr J Trent N Vigneswaran D Miller 1999 The integral divalent cation within the intermolecular purine*purine. pyrimidine structure: a variable determinant of the potential for and characteristics of the triple helical association Nucleic Acids Res 27 695 702
3. JR Cole B Chai RJ Farris Q Wang SA Kulam DM McGarrell GM Garrity JM Tiedje 2005 The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis Nucleic Acids Res 33 D294 D296
4. CC Conaway G Nie NS Hussain ES Fiala 1991 Comparison of oxidative damage to rat Liver DNA and RNA by primary nitroalkanes, secondary nitroalkanes, cyclopentanone oxime, and related compounds Cacer Res 51 3143 3147
5. K Honda MA Smith X Zhu D Baus WC Merrick AM Tartakoff T Hattier PL Harris SL Siedlak H Fujioka Q Liu PI Moreira FP Miller A Nunomura S Shimohama G Perry 2005 Ribosomal RNA in Alzheimer disease is oxidized by bound redox-active iron J Biol Chem 280 20978 20986
6. Martens H, Næs T (1989) Multivariate callibration. Wiley, Chichester
7. CE McEwan D Gatherer NR McEwan 1998 Nitrogen-fixing aerobic bacteria have higher genomic GC content than non-fixing species within the same genus Hereditas 128 173 178
8. XJ Min DA Hickey 2007 DNA asymmetric strand bias affects the amino Acid composition of mitochondrial proteins DNA Res 14 201 206
9. EP Rocha 2004 The replication-related organization of bacterial genomes Microbiology 150 1609 1627
10. K Rudi M Zimonja T Næs 2006 Alignment independent bi-linear multivariate modeling (AIBIMM) for global analyses of 16S rRNA phylogeny Int J Syst Evol Microbiol 56 1565 1575
11. J SantaLucia Jr D Hicks 2004 The thermodynamics of DNA structural motifs Annu Rev Biophys Biomol Struct 33 415 440
12. HH Thorp 2000 The importance of being r: greater oxidative stability of RNA compared with DNA Chem Biol 7 R33 R36
13. DA Usher AH McHale 1976 Hydrolytic stability of helical RNA: a selective advantage for the natural 3′,5′-bond Proc Natl Acad Sci U S A 73 1149 1153
14. HC Wang X Xia D Hickey 2006 Thermal adaptation of the small subunit ribosomal RNA gene: a comparative study J Mol Evol 63 120 126