메뉴 건너뛰기




Volumn 14, Issue 5, 2007, Pages 201-206

DNA asymmetric strand bias affects the amino acid composition of mitochondrial proteins

Author keywords

Amino acids; Codon usage; Mitochondrion; Strand asymmetry

Indexed keywords

AMINO ACID; DNA; MITOCHONDRIAL PROTEIN;

EID: 39749188243     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsm019     Document Type: Article
Times cited : (49)

References (24)
  • 2
    • 0031593216 scopus 로고    scopus 로고
    • Influence of genomic G + C content on average amino-acid composition of proteins from 59 bacterial species
    • Lobry, J. R., 1997, Influence of genomic G + C content on average amino-acid composition of proteins from 59 bacterial species, Gene, 205, 309-316.
    • (1997) Gene , vol.205 , pp. 309-316
    • Lobry, J.R.1
  • 3
    • 0033745103 scopus 로고    scopus 로고
    • Nucleotide bias causes a genomewide bias in the amino acid composition of proteins
    • Singer, G. A. and Hickey, D. A. 2000, Nucleotide bias causes a genomewide bias in the amino acid composition of proteins, Mol. Biol. Evol., 17, 1581-1588.
    • (2000) Mol. Biol. Evol , vol.17 , pp. 1581-1588
    • Singer, G.A.1    Hickey, D.A.2
  • 4
    • 0029985398 scopus 로고    scopus 로고
    • Asymmetric substitution patterns in the two DNA strands of bacteria
    • Lobry, J. R. 1996, Asymmetric substitution patterns in the two DNA strands of bacteria, Mol. Biol. Evol., 13, 660-665.
    • (1996) Mol. Biol. Evol , vol.13 , pp. 660-665
    • Lobry, J.R.1
  • 5
    • 0033053160 scopus 로고    scopus 로고
    • Two aspects of DNA base composition: G + C content and translation-coupled deviation from intra-strand rule of A = T and G = C
    • Sueoka, N. 1999, Two aspects of DNA base composition: G + C content and translation-coupled deviation from intra-strand rule of A = T and G = C, J. Mol. Evol., 49, 49-62.
    • (1999) J. Mol. Evol , vol.49 , pp. 49-62
    • Sueoka, N.1
  • 6
    • 0029049426 scopus 로고
    • Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
    • Perna, N. T. and Kocher, T. D. 1995, Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes, J. Mol. Evol., 41, 353-358.
    • (1995) J. Mol. Evol , vol.41 , pp. 353-358
    • Perna, N.T.1    Kocher, T.D.2
  • 7
    • 0032584101 scopus 로고    scopus 로고
    • Strand compositional asymmetry in bacterial and large viral genomes
    • Mrázek, J. and Karlin, S. 1998, Strand compositional asymmetry in bacterial and large viral genomes, Proc. Natl. Acad. Sci. USA, 95, 3720-3725.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3720-3725
    • Mrázek, J.1    Karlin, S.2
  • 8
    • 0032417093 scopus 로고    scopus 로고
    • Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes
    • McLean, M. J., Wolfe, K. H. and Devine, K. M. 1998, Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes, J. Mol. Evol., 47, 691-696.
    • (1998) J. Mol. Evol , vol.47 , pp. 691-696
    • McLean, M.J.1    Wolfe, K.H.2    Devine, K.M.3
  • 9
    • 0032910674 scopus 로고    scopus 로고
    • Universal replication biases in bacteria
    • Rocha, E. P. C., Danchin, A. and Viari, A. 1999, Universal replication biases in bacteria, Mol. Microbiol., 32, 11-16.
    • (1999) Mol. Microbiol , vol.32 , pp. 11-16
    • Rocha, E.P.C.1    Danchin, A.2    Viari, A.3
  • 10
    • 0033118273 scopus 로고    scopus 로고
    • Proteome composition and codon usage in spirochaetes: Species-specific and DNA strand-specific mutational biases
    • Lafay, B., Lloyd, A. T., McLean, M. J., Devine, K. M., Sharp, P. M. and Wolfe, K. H. 1999, Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases, Nucleic Acids Res., 27, 1642-1649.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1642-1649
    • Lafay, B.1    Lloyd, A.T.2    McLean, M.J.3    Devine, K.M.4    Sharp, P.M.5    Wolfe, K.H.6
  • 11
    • 0031020582 scopus 로고    scopus 로고
    • Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria
    • Foster, P. G., Jermiin, L. S. and Hickey, D. A., 1997, Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria, J. Mol. Evol., 44, 282-288.
    • (1997) J. Mol. Evol , vol.44 , pp. 282-288
    • Foster, P.G.1    Jermiin, L.S.2    Hickey, D.A.3
  • 12
    • 16544376001 scopus 로고    scopus 로고
    • Codon usage and bias in mitochondrial genomes of parasitic platyhel-minthes
    • Le, T. H., McManus, D.P. and Blair, D. 2004, Codon usage and bias in mitochondrial genomes of parasitic platyhel-minthes, Korean J. Parasitol., 42, 159-167.
    • (2004) Korean J. Parasitol , vol.42 , pp. 159-167
    • Le, T.H.1    McManus, D.P.2    Blair, D.3
  • 14
    • 0034888796 scopus 로고    scopus 로고
    • Ongoing evolution of strand composition in bacterial genomes
    • Rocha, E. P. and Danchin, A. 2001, Ongoing evolution of strand composition in bacterial genomes, Mol. Biol. Evol., 18, 1789-1799.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 1789-1799
    • Rocha, E.P.1    Danchin, A.2
  • 15
    • 33845289433 scopus 로고    scopus 로고
    • Similar compositional biases are caused by very different mutational effects
    • Rocha, E. P., Touchon, M. and Feil, E. J. 2006, Similar compositional biases are caused by very different mutational effects, Genome Res., 16, 1537-1547.
    • (2006) Genome Res , vol.16 , pp. 1537-1547
    • Rocha, E.P.1    Touchon, M.2    Feil, E.J.3
  • 16
    • 0242318326 scopus 로고    scopus 로고
    • Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mito-chondrial genomes
    • Faith, J. J. and Pollock, D. D. 2003, Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mito-chondrial genomes, Genetics, 165, 735-745.
    • (2003) Genetics , vol.165 , pp. 735-745
    • Faith, J.J.1    Pollock, D.D.2
  • 17
    • 0042834265 scopus 로고    scopus 로고
    • Strand compositional asymmetries of nuclear DNA in eukaryotes
    • Niu, D. K., Lin, K. and Zhang, D.Y. 2003, Strand compositional asymmetries of nuclear DNA in eukaryotes, J. Mol. Evol., 57, 325-334.
    • (2003) J. Mol. Evol , vol.57 , pp. 325-334
    • Niu, D.K.1    Lin, K.2    Zhang, D.Y.3
  • 18
    • 4644246096 scopus 로고    scopus 로고
    • Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes
    • Touchon, M., Arneodo, A., d'Aubenton-Carafa, Y. and Thermes, C. 2004, Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes, Nucleic Acids Res., 32, 4969-4978.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4969-4978
    • Touchon, M.1    Arneodo, A.2    d'Aubenton-Carafa, Y.3    Thermes, C.4
  • 19
    • 28844437888 scopus 로고    scopus 로고
    • Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution
    • Hassanin, A. 2006, Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution, Mol. Phylogenet. Evol., 38, 100-116.
    • (2006) Mol. Phylogenet. Evol , vol.38 , pp. 100-116
    • Hassanin, A.1
  • 20
    • 34247566505 scopus 로고    scopus 로고
    • The effect of model choice on phylogenetic inference using mitochondrial sequence data: Lessons from the scorpions
    • Jones, M., Gantenbein, B., Fet, V. and Blaxter, M. 2007, The effect of model choice on phylogenetic inference using mitochondrial sequence data: lessons from the scorpions, Mol. Phylogenet. Evol., 43, 583-595.
    • (2007) Mol. Phylogenet. Evol , vol.43 , pp. 583-595
    • Jones, M.1    Gantenbein, B.2    Fet, V.3    Blaxter, M.4
  • 21
    • 0035220937 scopus 로고    scopus 로고
    • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    • RESEARCH0010
    • Knight, R. D., Freeland, S. J. and Landweber, L. F. 2001, A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes, Genome Biol., 2, RESEARCH0010.
    • (2001) Genome Biol , vol.2
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 22
    • 1242284665 scopus 로고    scopus 로고
    • Mutational bias affects protein evolution in flowering plants
    • Wang, H. C., Singer, G. A. and Hickey, D. A. 2004, Mutational bias affects protein evolution in flowering plants, Mol. Biol. Evol., 21, 90-96.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 90-96
    • Wang, H.C.1    Singer, G.A.2    Hickey, D.A.3
  • 23
    • 0347627539 scopus 로고    scopus 로고
    • Transcription-coupled TA and GC strand asymmetries in the human genome
    • Touchon, M., Nicolay, S., Arneodo, A., d'Aubenton-Carafa, Y. and Thermes, C. 2003, Transcription-coupled TA and GC strand asymmetries in the human genome, FEBS Lett., 555, 579-582.
    • (2003) FEBS Lett , vol.555 , pp. 579-582
    • Touchon, M.1    Nicolay, S.2    Arneodo, A.3    d'Aubenton-Carafa, Y.4    Thermes, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.