-
1
-
-
0014649230
-
Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions
-
3
-
M. A. Savageau 1969 Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions Journal of Theoretical Biology 25 3 365 369
-
(1969)
Journal of Theoretical Biology
, vol.25
, pp. 365-369
-
-
Savageau, M.A.1
-
2
-
-
0014658880
-
Biochemical systems analysis. II. the steady-state solutions for an n-pool system using a power-law approximation
-
3
-
M. A. Savageau 1969 Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation Journal of Theoretical Biology 25 3 370 379
-
(1969)
Journal of Theoretical Biology
, vol.25
, pp. 370-379
-
-
Savageau, M.A.1
-
7
-
-
0015989446
-
A linear steady-state treatment of enzymatic chains: General properties, control and effector strength
-
R. Heinrich T. A. Rapoport 1974 A linear steady-state treatment of enzymatic chains: General properties, control and effector strength European Journal of Biochemistry 42 89 95
-
(1974)
European Journal of Biochemistry
, vol.42
, pp. 89-95
-
-
Heinrich, R.1
Rapoport, T.A.2
-
10
-
-
0036526636
-
The mathematics of metabolic control analysis revisited
-
2
-
D. Visser J. J. Heijnen 2002 The mathematics of metabolic control analysis revisited Metabolic Engineering 4 2 114 123
-
(2002)
Metabolic Engineering
, vol.4
, pp. 114-123
-
-
Visser, D.1
Heijnen, J.J.2
-
11
-
-
33846940743
-
Kinetic modeling using S-systems and lin-log approaches
-
F.-S. Wang C.-L. Ko 2007 Kinetic modeling using S-systems and lin-log approaches Biochemical Engineering Journal 33 238 247
-
(2007)
Biochemical Engineering Journal
, vol.33
, pp. 238-247
-
-
Wang, F.-S.1
Ko, C.-L.2
-
12
-
-
0032499741
-
Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets
-
P. J. E. Goss J. Peccoud 1998 Quantitative modeling of stochastic systems in molecular biology by using stochastic Petri nets In: Proceedings of the National Academy of Sciences 95 6750 6755
-
(1998)
In: Proceedings of the National Academy of Sciences
, vol.95
, pp. 6750-6755
-
-
Goss, P.J.E.1
Peccoud, J.2
-
14
-
-
27644480953
-
A theory of stochastic systems part I: Stochastic automata
-
1
-
P. R. D'Argenio J.-P. Katoen 2005 A theory of stochastic systems part I: Stochastic automata Information and Computation 203 1 1 38
-
(2005)
Information and Computation
, vol.203
, pp. 1-38
-
-
D'Argenio, P.R.1
Katoen, J.-P.2
-
15
-
-
44049109914
-
A rigorous derivation of the chemical master equation
-
D. T. Gillespie 1992 A rigorous derivation of the chemical master equation Physica A 188 404 425
-
(1992)
Physica A
, vol.188
, pp. 404-425
-
-
Gillespie, D.T.1
-
17
-
-
0345170900
-
Biopathways representation and simulation on hybrid functional Petri net
-
H. Matsuno Y. Tanaka 2003 Biopathways representation and simulation on hybrid functional Petri net In Silico Biology 3 389 404
-
(2003)
In Silico Biology
, vol.3
, pp. 389-404
-
-
Matsuno, H.1
Tanaka, Y.2
-
18
-
-
62349126975
-
Hybrid modeling in biochemical systems theory by means of functional Petri nets
-
(in press)
-
Wu J, Voit E O. Hybrid modeling in biochemical systems theory by means of functional Petri nets. Journal of Bioinformatics and Computational Biology, 2009 (in press)
-
(2009)
Journal of Bioinformatics and Computational Biology
-
-
Wu, J.1
Voit, E.O.2
-
19
-
-
0037119587
-
Stochastic gene expression in a single cell
-
5584
-
M. B. Elowitz A. J. Levine 2002 Stochastic gene expression in a single cell Science 297 5584 1183 1186
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
-
20
-
-
0242416539
-
Noise in eukaryotic gene expression
-
6932
-
W. J. Blake M. Kaern 2003 Noise in eukaryotic gene expression Nature 422 6932 633 637
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
-
22
-
-
2442543316
-
Reaction kinetics in intracellular environments with macromolecular crowding: Simulations and rate laws
-
S. Schnell T. E. Turner 2004 Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws Progress in Biophysics and Molecular Biology 85 235 260
-
(2004)
Progress in Biophysics and Molecular Biology
, vol.85
, pp. 235-260
-
-
Schnell, S.1
Turner, T.E.2
-
23
-
-
0027829616
-
Molecular crowding and molecular recognition
-
A. P. Minton 1993 Molecular crowding and molecular recognition Journal Molecular Recognition 6 211 214
-
(1993)
Journal Molecular Recognition
, vol.6
, pp. 211-214
-
-
Minton, A.P.1
-
24
-
-
0032311227
-
Molecular crowding: Analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion
-
A. P. Minton 1998 Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion Methods Enzymol 295 127 149
-
(1998)
Methods Enzymol
, vol.295
, pp. 127-149
-
-
Minton, A.P.1
-
25
-
-
0023375957
-
Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3T3 cells
-
K. Luby-Phelps P. E. Castle 1987 Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3T3 cells Proceedings of National Academy of Sciences 84 4910 4913
-
(1987)
Proceedings of National Academy of Sciences
, vol.84
, pp. 4910-4913
-
-
Luby-Phelps, K.1
Castle, P.E.2
-
26
-
-
0025883717
-
Dynamics, structure, and functions are coupled in the mitrocondrial matrix
-
B. A. Scalettar J. R. Abney 1991 Dynamics, structure, and functions are coupled in the mitrocondrial matrix Proceedings of National Academy of Sciences 88 8057 8061
-
(1991)
Proceedings of National Academy of Sciences
, vol.88
, pp. 8057-8061
-
-
Scalettar, B.A.1
Abney, J.R.2
-
27
-
-
0036164351
-
Solute and macromolecule diffusion in cellular aqueous compartments
-
A. S. Verkman 2002 Solute and macromolecule diffusion in cellular aqueous compartments Trends in Biochemical Science 27 27 33
-
(2002)
Trends in Biochemical Science
, vol.27
, pp. 27-33
-
-
Verkman, A.S.1
-
28
-
-
0021381587
-
Properties and metabolism of the aqueous cytoplasm and its boundaries
-
J. S. Clegg 1984 Properties and metabolism of the aqueous cytoplasm and its boundaries American Journal Physiology 246 R133 R151
-
(1984)
American Journal Physiology
, vol.246
-
-
Clegg, J.S.1
-
30
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
D. T. Gillespie 1976 A general method for numerically simulating the stochastic time evolution of coupled chemical reactions Journal of Computation Physics 22 403 434
-
(1976)
Journal of Computation Physics
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
31
-
-
0037058951
-
Single-molecule enzymology: Stochastic Michaelis-Menten kinetics
-
H. Qian E. L. Elson 2002 Single-molecule enzymology: stochastic Michaelis-Menten kinetics Biophysical Chemistry 101-102 565 576
-
(2002)
Biophysical Chemistry
, vol.101-102
, pp. 565-576
-
-
Qian, H.1
Elson, E.L.2
-
32
-
-
0035044484
-
Self-organisation and orderly processes by individual protein complexes in the bacterial cell
-
H. Kuthan 2001 Self-organisation and orderly processes by individual protein complexes in the bacterial cell Progress in Biophysics and Molecular Biology 75 1 17
-
(2001)
Progress in Biophysics and Molecular Biology
, vol.75
, pp. 1-17
-
-
Kuthan, H.1
-
33
-
-
0037174669
-
Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop
-
5594
-
H. Hirata S. Yoshiura 2002 Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop Science 298 5594 840 843
-
(2002)
Science
, vol.298
, pp. 840-843
-
-
Hirata, H.1
Yoshiura, S.2
-
34
-
-
0043180477
-
Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays
-
16
-
N. A. Monk 2003 Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays Current Biology 13 16 1409 1413
-
(2003)
Current Biology
, vol.13
, pp. 1409-1413
-
-
Monk, N.A.1
-
36
-
-
1342309249
-
Hybrid simulation of cellular behavior
-
3
-
T. R. Kiehl R. M. Mattheyses 2004 Hybrid simulation of cellular behavior Bioinformatics 20 3 316 322
-
(2004)
Bioinformatics
, vol.20
, pp. 316-322
-
-
Kiehl, T.R.1
Mattheyses, R.M.2
-
37
-
-
28344455163
-
Approximation of delays in biochemical systems
-
2
-
W. T. Mocek R. Rudnicki 2005 Approximation of delays in biochemical systems Mathematical Biosciences 198 2 190 216
-
(2005)
Mathematical Biosciences
, vol.198
, pp. 190-216
-
-
Mocek, W.T.1
Rudnicki, R.2
-
39
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichiacoli
-
T. S. Gardner C. R. Cantor 2000 Construction of a genetic toggle switch in Escherichiacoli Nature 403 339 342
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
-
40
-
-
33744811457
-
Stochastic models for regulatory networks of the genetic toggle switch
-
22
-
T. Tian K. Burrage 2006 Stochastic models for regulatory networks of the genetic toggle switch Proceedings of the National Academy of Sciences 103 22 8372 8377
-
(2006)
Proceedings of the National Academy of Sciences
, vol.103
, pp. 8372-8377
-
-
Tian, T.1
Burrage, K.2
-
41
-
-
0342349799
-
Recasting nonlinear differential equations as S-systems: A canonical nonlinear form
-
1
-
M. A. Savageau E. O. Voit 1987 Recasting nonlinear differential equations as S-systems: a canonical nonlinear form Mathematical Biosciences 87 1 31 113
-
(1987)
Mathematical Biosciences
, vol.87
, pp. 31-113
-
-
Savageau, M.A.1
Voit, E.O.2
-
44
-
-
34447550826
-
Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data
-
1
-
M. Nagasaki R. Yamaguchi 2006 Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data Genome Informatics 17 1 46 61
-
(2006)
Genome Informatics
, vol.17
, pp. 46-61
-
-
Nagasaki, M.1
Yamaguchi, R.2
-
46
-
-
27244440000
-
A novel parameter decomposition approach to faithful fitting of quadric surfaces
-
X. Jiang D. C. Cheng 2005 A novel parameter decomposition approach to faithful fitting of quadric surfaces Pattern Recognition: 27th DAGM Symposium, LNCS 3663 168 175
-
(2005)
Pattern Recognition: 27th DAGM Symposium, LNCS
, vol.3663
, pp. 168-175
-
-
Jiang, X.1
Cheng, D.C.2
-
48
-
-
33747876155
-
A decompositional approach to parameter estimation in pathway modeling: A case study of the Akt and MAPK pathways and their crosstalk
-
14
-
G. Koh H. Teong 2006 A decompositional approach to parameter estimation in pathway modeling: a case study of the Akt and MAPK pathways and their crosstalk Bioinformatics 22 14 e271 280
-
(2006)
Bioinformatics
, vol.22
, pp. 271-280
-
-
Koh, G.1
Teong, H.2
-
49
-
-
0033665572
-
Extending the method of mathematically controlled comparison to include numerical comparisons
-
9
-
R. Alves M.A. Savageau 2000 Extending the method of mathematically controlled comparison to include numerical comparisons Bioinformatics 16 9 786 798
-
(2000)
Bioinformatics
, vol.16
, pp. 786-798
-
-
Alves, R.1
Savageau, M.A.2
|