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Volumn 22, Issue 14, 2006, Pages

A decompositional approach to parameter estimation in pathway modeling: A case study of the Akt and MAPK pathways and their crosstalk

Author keywords

[No Author keywords available]

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE; MITOGEN ACTIVATED PROTEIN KINASE 3; PHOSPHATIDYLINOSITOL 3 KINASE; PHOSPHATIDYLINOSITOL 3,4,5 TRISPHOSPHATE 3 PHOSPHATASE; PROTEIN BAX; PROTEIN BCL 2; PROTEIN BCL XL; PROTEIN KINASE B; SMALL INTERFERING RNA; TRANSCRIPTION FACTOR FKHR;

EID: 33747876155     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl264     Document Type: Conference Paper
Times cited : (70)

References (34)
  • 3
    • 0037592480 scopus 로고    scopus 로고
    • Evolution strategies - A comprehensive introduction
    • Beyer,H.G. and Schwefel,H.P. (2002) Evolution strategies - A comprehensive introduction. Natural Computing, 1, 3-52.
    • (2002) Natural Computing , vol.1 , pp. 3-52
    • Beyer, H.G.1    Schwefel, H.P.2
  • 5
    • 0345170901 scopus 로고    scopus 로고
    • Quantitative Petri net model of gene regulated metabolic networks in the cell
    • Chen,M. and Hofestaedt,R. (2003) Quantitative Petri net model of gene regulated metabolic networks in the cell. In Silico Biology, 3, 347-365.
    • (2003) In Silico Biology , vol.3 , pp. 347-365
    • Chen, M.1    Hofestaedt, R.2
  • 6
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
    • de Jong,H. (2002) Modeling and Simulation of Genetic Regulatory Systems: A Literature Review. J. of Comp. Biol., 9(1), 67-103.
    • (2002) J. of Comp. Biol. , vol.9 , Issue.1 , pp. 67-103
    • de Jong, H.1
  • 9
    • 0034905925 scopus 로고    scopus 로고
    • Signal Transduction: Multiple Pathways, Multiple Options for Therapy
    • Heldin,C.H. (2001) Signal Transduction: Multiple Pathways, Multiple Options for Therapy. Stem Cells, 19(4), 295-303.
    • (2001) Stem Cells , vol.19 , Issue.4 , pp. 295-303
    • Heldin, C.H.1
  • 13
    • 0033517244 scopus 로고    scopus 로고
    • Akt is more than just a Bad kinase
    • Khwaja,A. (1999) Akt is more than just a Bad kinase. Nature, 401, 33-34.
    • (1999) Nature , vol.401 , pp. 33-34
    • Khwaja, A.1
  • 15
    • 0037461033 scopus 로고    scopus 로고
    • Dynamic modeling of genetic networks using genetic algorithm and S-system
    • Kikuchi,S., Tominaga,D., Arita,M., Takahashi,K. and Tomita,M. (2003) Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinformatics, 19(5), 643-650.
    • (2003) Bioinformatics , vol.19 , Issue.5 , pp. 643-650
    • Kikuchi, S.1    Tominaga, D.2    Arita, M.3    Takahashi, K.4    Tomita, M.5
  • 16
    • 26444479778 scopus 로고
    • Optimization by Simulated Annealing
    • Kirkpatrick,S., Gelatt Jr,C.D. and Vecchi,M.P. (1983) Optimization by Simulated Annealing. Science, 220(4598), 671-680.
    • (1983) Science , vol.220 , Issue.4598 , pp. 671-680
    • Kirkpatrick, S.1    Gelatt Jr., C.D.2    Vecchi, M.P.3
  • 20
    • 0242574982 scopus 로고    scopus 로고
    • Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods
    • Moles,C.G., Mendes,P. and Banga,J.R. (2003) Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods. Genome Research, 13(11), 2467-2474.
    • (2003) Genome Research , vol.13 , Issue.11 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 21
    • 0036185848 scopus 로고    scopus 로고
    • The protein kinase B/Akt signalling pathway in human malignancy
    • Nicholson,K.M. and Anderson,N.G. (2002) The protein kinase B/Akt signalling pathway in human malignancy. Cellular Signalling, 14, 381-395.
    • (2002) Cellular Signalling , vol.14 , pp. 381-395
    • Nicholson, K.M.1    Anderson, N.G.2
  • 22
    • 2642533799 scopus 로고    scopus 로고
    • Genomic Object Net: I. A platform for modelling and simulating biopathways
    • Nagasaki,M., Doi,A., Matsuno,H. and Miyano,S. (2003) Genomic Object Net: I. A platform for modelling and simulating biopathways. Applied Bioinformatics, 2(3), 181-184.
    • (2003) Applied Bioinformatics , vol.2 , Issue.3 , pp. 181-184
    • Nagasaki, M.1    Doi, A.2    Matsuno, H.3    Miyano, S.4
  • 26
    • 4043102610 scopus 로고    scopus 로고
    • Involvement of 3-Phosphoinositide-dependent Protein Kinase-1 in the MEK/MAPK Signal Transduction Pathway
    • Sato,S., Fujita,N. and Tsuruo,T. (2004) Involvement of 3-Phosphoinositide-dependent Protein Kinase-1 in the MEK/MAPK Signal Transduction Pathway. The J. of Biol. Chem., 279(32), 33759-33767.
    • (2004) The J. of Biol. Chem. , vol.279 , Issue.32 , pp. 33759-33767
    • Sato, S.1    Fujita, N.2    Tsuruo, T.3
  • 27
    • 0024673591 scopus 로고
    • Strategies for Representing Metabolic Pathways within Biochemical Systems Theory: Reversible Pathways
    • Sorribas,A. and Savageau,M.A. (1988) Strategies for Representing Metabolic Pathways within Biochemical Systems Theory: Reversible Pathways. Mathematical Biosciences, 94(2), 239-269.
    • (1988) Mathematical Biosciences , vol.94 , Issue.2 , pp. 239-269
    • Sorribas, A.1    Savageau, M.A.2
  • 29
    • 33646191890 scopus 로고    scopus 로고
    • Reconstructing Metabolic Networks Using Interval Analysis
    • Tucker,W. and Moulten,V. (2005) Reconstructing Metabolic Networks Using Interval Analysis. Lecture Notes in Computer Science, 3692, 192-203.
    • (2005) Lecture Notes in Computer Science , vol.3692 , pp. 192-203
    • Tucker, W.1    Moulten, V.2
  • 30
    • 0034653608 scopus 로고    scopus 로고
    • The PI3K-PDK1 connection: More than just a road to PKB
    • Vanhaesebroeck,B. and Alessi,D.R. (2000) The PI3K-PDK1 connection: More than just a road to PKB. Biochem. J., 346, 561-576.
    • (2000) Biochem. J. , vol.346 , pp. 561-576
    • Vanhaesebroeck, B.1    Alessi, D.R.2
  • 31
    • 0345096675 scopus 로고    scopus 로고
    • Steady state analysis of metabolic pathways using Petri nets
    • Voss,K., Heiner,M. and Koch,I. (2003) Steady state analysis of metabolic pathways using Petri nets. In Silico Biology, 3, 367-387.
    • (2003) In Silico Biology , vol.3 , pp. 367-387
    • Voss, K.1    Heiner, M.2    Koch, I.3
  • 32
    • 0031638375 scopus 로고    scopus 로고
    • Decompositional, Model-based learning and its Analogy to Diagnosis
    • Williams,B.C. and Millar,W. (1998) Decompositional, Model-based learning and its Analogy to Diagnosis. AAAI/IAAI, 197-204.
    • (1998) AAAI/IAAI , pp. 197-204
    • Williams, B.C.1    Millar, W.2
  • 34
    • 0345602990 scopus 로고    scopus 로고
    • Topological analysis of metabolic networks based on Petri net theory
    • Zevedei-Oancea,I. and Schuster,S. (2003) Topological analysis of metabolic networks based on Petri net theory. In Silico Biology, 3, 323-345.
    • (2003) In Silico Biology , vol.3 , pp. 323-345
    • Zevedei-Oancea, I.1    Schuster, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.