-
1
-
-
84944214361
-
Hybrid Modeling and Simulation of Biomolecular Networks
-
Alur,R., Belta,C., Ivančić,F., Kumar,V., Mintz,M., Pappas,G.J., Rubin,H. and Schug,J. (2001) Hybrid Modeling and Simulation of Biomolecular Networks. Proc. 4th International Workshop on Hybrid Systems: Computation and Control, Lecture Notes in Computer Science, Vol 2034, 19-32.
-
(2001)
Proc. 4th International Workshop on Hybrid Systems: Computation and Control, Lecture Notes in Computer Science
, vol.2034
, pp. 19-32
-
-
Alur, R.1
Belta, C.2
Ivančić, F.3
Kumar, V.4
Mintz, M.5
Pappas, G.J.6
Rubin, H.7
Schug, J.8
-
2
-
-
0032560796
-
Akt activation by growth factors is a multiple-step process: The role of the PH domain
-
Bellacosa,A., Chan,T.O., Ahmed,N.N., Datta,K., Malstrom,S., Stokoe,D., McCormick,F., Feng,J. and Tsichlis,P. (1998) Akt activation by growth factors is a multiple-step process: The role of the PH domain. Oncogene, 17, 313-325.
-
(1998)
Oncogene
, vol.17
, pp. 313-325
-
-
Bellacosa, A.1
Chan, T.O.2
Ahmed, N.N.3
Datta, K.4
Malstrom, S.5
Stokoe, D.6
McCormick, F.7
Feng, J.8
Tsichlis, P.9
-
3
-
-
0037592480
-
Evolution strategies - A comprehensive introduction
-
Beyer,H.G. and Schwefel,H.P. (2002) Evolution strategies - A comprehensive introduction. Natural Computing, 1, 3-52.
-
(2002)
Natural Computing
, vol.1
, pp. 3-52
-
-
Beyer, H.G.1
Schwefel, H.P.2
-
4
-
-
0034193426
-
Phosphatidylinositol 3-kinase regulates Raf1 through Pak phosphorylation of serine 338
-
Chaudhary,A., King,W.G., Mattaliano,M.D., Frost,J.A., Diaz,B., Morrison,D.K., Cobb,M.H., Marshall,M.S. and Brugge,J.S. (2000) Phosphatidylinositol 3-kinase regulates Raf1 through Pak phosphorylation of serine 338. Current Biology, 10, 551-554.
-
(2000)
Current Biology
, vol.10
, pp. 551-554
-
-
Chaudhary, A.1
King, W.G.2
Mattaliano, M.D.3
Frost, J.A.4
Diaz, B.5
Morrison, D.K.6
Cobb, M.H.7
Marshall, M.S.8
Brugge, J.S.9
-
5
-
-
0345170901
-
Quantitative Petri net model of gene regulated metabolic networks in the cell
-
Chen,M. and Hofestaedt,R. (2003) Quantitative Petri net model of gene regulated metabolic networks in the cell. In Silico Biology, 3, 347-365.
-
(2003)
In Silico Biology
, vol.3
, pp. 347-365
-
-
Chen, M.1
Hofestaedt, R.2
-
6
-
-
0036207347
-
Modeling and Simulation of Genetic Regulatory Systems: A Literature Review
-
de Jong,H. (2002) Modeling and Simulation of Genetic Regulatory Systems: A Literature Review. J. of Comp. Biol., 9(1), 67-103.
-
(2002)
J. of Comp. Biol.
, vol.9
, Issue.1
, pp. 67-103
-
-
de Jong, H.1
-
7
-
-
84944196766
-
Lateral Inhibition through Delta-Notch Signaling: A Piecewise Affine Hybrid Model
-
Ghosh,R. and Tomlin,C.J. (2001) Lateral Inhibition through Delta-Notch Signaling: A Piecewise Affine Hybrid Model. Proc. 4th International Workshop on Hybrid Systems: Computation and Control, Lecture Notes in Computer Science, 2034, 232-246.
-
(2001)
Proc. 4th International Workshop on Hybrid Systems: Computation and Control, Lecture Notes in Computer Science
, vol.2034
, pp. 232-246
-
-
Ghosh, R.1
Tomlin, C.J.2
-
8
-
-
0041344538
-
A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signaling
-
Hatakeyama,M., Kimura,S., Naka,T., Kawasaki,T., Yumoto,N., Ichikawa,M., Kim,J.H., Saito,K., Saeki,M., Shirouzu,M., Yokoyama,S. Konagaya,A. (2003) A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signaling. Biochem J., 373(2), 451-463.
-
(2003)
Biochem J.
, vol.373
, Issue.2
, pp. 451-463
-
-
Hatakeyama, M.1
Kimura, S.2
Naka, T.3
Kawasaki, T.4
Yumoto, N.5
Ichikawa, M.6
Kim, J.H.7
Saito, K.8
Saeki, M.9
Shirouzu, M.10
Yokoyama, S.11
Konagaya, A.12
-
9
-
-
0034905925
-
Signal Transduction: Multiple Pathways, Multiple Options for Therapy
-
Heldin,C.H. (2001) Signal Transduction: Multiple Pathways, Multiple Options for Therapy. Stem Cells, 19(4), 295-303.
-
(2001)
Stem Cells
, vol.19
, Issue.4
, pp. 295-303
-
-
Heldin, C.H.1
-
11
-
-
0020638814
-
LNCaP model of human prostatic carcinoma
-
Horoszewicz,J.S., Leong,S.S., Kawinski,E., Karr,J.P., Rosenthal,H., Chu,T.M., Mirand,E.A. and Murphy,G.P. (1983) LNCaP model of human prostatic carcinoma. Cancer Res., 43(4), 1809-1818.
-
(1983)
Cancer Res.
, vol.43
, Issue.4
, pp. 1809-1818
-
-
Horoszewicz, J.S.1
Leong, S.S.2
Kawinski, E.3
Karr, J.P.4
Rosenthal, H.5
Chu, T.M.6
Mirand, E.A.7
Murphy, G.P.8
-
12
-
-
27244440000
-
A Novel Parameter Decomposition Approach to Faithful Fitting of Quadric Surfaces
-
Jiang,X. and Cheng,D.C. (2005) A Novel Parameter Decomposition Approach to Faithful Fitting of Quadric Surfaces. Pattern Recognition: 27th DAGM Symposium, Lecture Notes in Computer Science, 3663, 168-175.
-
(2005)
Pattern Recognition: 27th DAGM Symposium, Lecture Notes in Computer Science
, vol.3663
, pp. 168-175
-
-
Jiang, X.1
Cheng, D.C.2
-
13
-
-
0033517244
-
Akt is more than just a Bad kinase
-
Khwaja,A. (1999) Akt is more than just a Bad kinase. Nature, 401, 33-34.
-
(1999)
Nature
, vol.401
, pp. 33-34
-
-
Khwaja, A.1
-
14
-
-
18944405460
-
Parameter Estimation for the Simulation of Biochemical Pathways
-
Kimura,S., Hatakeyama,M., Kawasaki,T., Naka,T. and Konagaya,A. (2004) Parameter Estimation for the Simulation of Biochemical Pathways. Proc. 15th IASTED International Conference on Modeling and Simulation.
-
(2004)
Proc. 15th IASTED International Conference on Modeling and Simulation
-
-
Kimura, S.1
Hatakeyama, M.2
Kawasaki, T.3
Naka, T.4
Konagaya, A.5
-
15
-
-
0037461033
-
Dynamic modeling of genetic networks using genetic algorithm and S-system
-
Kikuchi,S., Tominaga,D., Arita,M., Takahashi,K. and Tomita,M. (2003) Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinformatics, 19(5), 643-650.
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 643-650
-
-
Kikuchi, S.1
Tominaga, D.2
Arita, M.3
Takahashi, K.4
Tomita, M.5
-
16
-
-
26444479778
-
Optimization by Simulated Annealing
-
Kirkpatrick,S., Gelatt Jr,C.D. and Vecchi,M.P. (1983) Optimization by Simulated Annealing. Science, 220(4598), 671-680.
-
(1983)
Science
, vol.220
, Issue.4598
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt Jr., C.D.2
Vecchi, M.P.3
-
17
-
-
33745783973
-
Symbolic Systems Biology: Hybrid Modeling and Analysis of Biological Networks
-
Lincoln,P. and Tiwari,A. (2004) Symbolic Systems Biology: Hybrid Modeling and Analysis of Biological Networks. Proc. 7th International Workshop on Hybrid Systems: Computation and Control, Lecture Notes in Computer Science, 2993, 660-672.
-
(2004)
Proc. 7th International Workshop on Hybrid Systems: Computation and Control, Lecture Notes in Computer Science
, vol.2993
, pp. 660-672
-
-
Lincoln, P.1
Tiwari, A.2
-
18
-
-
0345170900
-
Biopathways representation and simulation on hybrid functional Petri net
-
Matsuno,H., Tanaka,Y., Aoshima,H., Doi,A., Matsui,M. and Miyano,S. (2003) Biopathways representation and simulation on hybrid functional Petri net. In Silico Biology, 3, 389-404.
-
(2003)
In Silico Biology
, vol.3
, pp. 389-404
-
-
Matsuno, H.1
Tanaka, Y.2
Aoshima, H.3
Doi, A.4
Matsui, M.5
Miyano, S.6
-
19
-
-
0037163050
-
Regulation of Raf-Akt Cross-talk
-
Moelling,K., Schad,K., Bosse,M., Zimmermann,S. and Schweneker,M. (2002) Regulation of Raf-Akt Cross-talk. The J. of Biol. Chem., 277(34), 31099-31106.
-
(2002)
The J. of Biol. Chem.
, vol.277
, Issue.34
, pp. 31099-31106
-
-
Moelling, K.1
Schad, K.2
Bosse, M.3
Zimmermann, S.4
Schweneker, M.5
-
20
-
-
0242574982
-
Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods
-
Moles,C.G., Mendes,P. and Banga,J.R. (2003) Parameter Estimation in Biochemical Pathways: A Comparison of Global Optimization Methods. Genome Research, 13(11), 2467-2474.
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2467-2474
-
-
Moles, C.G.1
Mendes, P.2
Banga, J.R.3
-
21
-
-
0036185848
-
The protein kinase B/Akt signalling pathway in human malignancy
-
Nicholson,K.M. and Anderson,N.G. (2002) The protein kinase B/Akt signalling pathway in human malignancy. Cellular Signalling, 14, 381-395.
-
(2002)
Cellular Signalling
, vol.14
, pp. 381-395
-
-
Nicholson, K.M.1
Anderson, N.G.2
-
22
-
-
2642533799
-
Genomic Object Net: I. A platform for modelling and simulating biopathways
-
Nagasaki,M., Doi,A., Matsuno,H. and Miyano,S. (2003) Genomic Object Net: I. A platform for modelling and simulating biopathways. Applied Bioinformatics, 2(3), 181-184.
-
(2003)
Applied Bioinformatics
, vol.2
, Issue.3
, pp. 181-184
-
-
Nagasaki, M.1
Doi, A.2
Matsuno, H.3
Miyano, S.4
-
26
-
-
4043102610
-
Involvement of 3-Phosphoinositide-dependent Protein Kinase-1 in the MEK/MAPK Signal Transduction Pathway
-
Sato,S., Fujita,N. and Tsuruo,T. (2004) Involvement of 3-Phosphoinositide-dependent Protein Kinase-1 in the MEK/MAPK Signal Transduction Pathway. The J. of Biol. Chem., 279(32), 33759-33767.
-
(2004)
The J. of Biol. Chem.
, vol.279
, Issue.32
, pp. 33759-33767
-
-
Sato, S.1
Fujita, N.2
Tsuruo, T.3
-
27
-
-
0024673591
-
Strategies for Representing Metabolic Pathways within Biochemical Systems Theory: Reversible Pathways
-
Sorribas,A. and Savageau,M.A. (1988) Strategies for Representing Metabolic Pathways within Biochemical Systems Theory: Reversible Pathways. Mathematical Biosciences, 94(2), 239-269.
-
(1988)
Mathematical Biosciences
, vol.94
, Issue.2
, pp. 239-269
-
-
Sorribas, A.1
Savageau, M.A.2
-
29
-
-
33646191890
-
Reconstructing Metabolic Networks Using Interval Analysis
-
Tucker,W. and Moulten,V. (2005) Reconstructing Metabolic Networks Using Interval Analysis. Lecture Notes in Computer Science, 3692, 192-203.
-
(2005)
Lecture Notes in Computer Science
, vol.3692
, pp. 192-203
-
-
Tucker, W.1
Moulten, V.2
-
30
-
-
0034653608
-
The PI3K-PDK1 connection: More than just a road to PKB
-
Vanhaesebroeck,B. and Alessi,D.R. (2000) The PI3K-PDK1 connection: More than just a road to PKB. Biochem. J., 346, 561-576.
-
(2000)
Biochem. J.
, vol.346
, pp. 561-576
-
-
Vanhaesebroeck, B.1
Alessi, D.R.2
-
31
-
-
0345096675
-
Steady state analysis of metabolic pathways using Petri nets
-
Voss,K., Heiner,M. and Koch,I. (2003) Steady state analysis of metabolic pathways using Petri nets. In Silico Biology, 3, 367-387.
-
(2003)
In Silico Biology
, vol.3
, pp. 367-387
-
-
Voss, K.1
Heiner, M.2
Koch, I.3
-
32
-
-
0031638375
-
Decompositional, Model-based learning and its Analogy to Diagnosis
-
Williams,B.C. and Millar,W. (1998) Decompositional, Model-based learning and its Analogy to Diagnosis. AAAI/IAAI, 197-204.
-
(1998)
AAAI/IAAI
, pp. 197-204
-
-
Williams, B.C.1
Millar, W.2
-
33
-
-
38949098902
-
Efficient Modeling of Excitable Cells Using Hybrid Automata
-
Ye,P., Entcheva,E., Grosu,R. and Smolka,S.A. (2005) Efficient Modeling of Excitable Cells Using Hybrid Automata. Computational Methods in Systems Biology.
-
(2005)
Computational Methods in Systems Biology
-
-
Ye, P.1
Entcheva, E.2
Grosu, R.3
Smolka, S.A.4
-
34
-
-
0345602990
-
Topological analysis of metabolic networks based on Petri net theory
-
Zevedei-Oancea,I. and Schuster,S. (2003) Topological analysis of metabolic networks based on Petri net theory. In Silico Biology, 3, 323-345.
-
(2003)
In Silico Biology
, vol.3
, pp. 323-345
-
-
Zevedei-Oancea, I.1
Schuster, S.2
|