Iranian beet necrotic yellow vein virus (BNYVV): Pronounced diversity of the p25 coding region in A-type BNYVV and identification of P-type BNYVV lacking a fifth RNA species

Archives of Virology

Volumn 154, Issue 3, 2009, Pages 501-506

  Mehrvar, M ^a,b   Valizadeh, J ^c   Koenig, R ^d   Bragard, C G ^a  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^b FERDOWSI UNIVERSITY OF MASHHAD   (Iran)

^c UNIVERSITY OF SISTAN AND BALUCHESTAN   (Iran)

^d INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN; VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; BEET; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; IRAN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; PLANT VIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; BETA VULGARIS; CLUSTER ANALYSIS; GENOME, VIRAL; IRAN; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT VIRUSES; POLYMORPHISM, GENETIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRAL PROTEINS;

BEET NECROTIC YELLOW VEIN VIRUS; BETA VULGARIS SUBSP. VULGARIS;

EID: 62149113670     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-009-0322-z     Document Type: Article

References (42)

1. R Acosta-Leal CM Rush 2007 Mutations associated with resistance-breaking isolates of Beet necrotic yellow vein virus and their allelic discrimination using TaqMan technology Phytopathology 97 325 330
2. MJC Asher 1993
3. S Bouzoubaa H Guilley G Jonard K Richards C Putz 1985 Nucleotide sequence analysis of RNA-3 and RNA-4 of Beet necrotic yellow vein virus, isolates f2 and g1 J Gen Virol 66 1553 1564
4. S Bouzoubaa V Ziegler D Beck H Guilley K Richards G Jonard 1986 Nucleotide sequence of Beet necrotic yellow vein virus RNA-2 J Gen Virol 67 1689 1700
5. S Bouzoubaa L Quillet H Guilley G Jonard K Richards 1987 Nucleotide sequence of Beet necrotic yellow vein virus RNA-1 J Gen Virol 68 615 626
6. Chiba S, Miyanishi M, Tamada T (2002) Single amino acid changes in the P25 protein of Beet necrotic yellow vein virus determine resistance responses of Beta vulgaris spp. maritima. In: Rush CM, Merz U (eds) Proceedings of the 5th symposium of the international working group on plant viruses with fungal vectors, 22-25 July 2002. Zurich, pp 5-8
7. S Chiba M Miyanishi IB Andica H Kondo T Tamada 2008 Identification of amino acids of the Beet necrotic yellow vein virus p25 protein required for induction of the resistance responses in leaves of Beta vulgaris plants J Gen Virol 89 1314 1323
8. J Devereux P Haeberli O Smithies 1984 A comprehensive set of sequence analysis programs for the VAX Nucl Acid Res 12 387 395
9. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 783 791
10. VA Harju RA Mumford A Blockley N Boonham GRG Clover R Weekes CM Henry 2002 Occurrence in the United Kingdom of Beet necrotic yellow vein virus isolates which contain RNA 5 Plant Pathol 51 811
11. K Izadpanah P Hashemi R Kamran M Pakniat A Sahandpour M Masumi 1996 Widespread occurrence of rhizomania-like disease of sugar beet in Fars Iran J Plant Pathol 32 200 206
12. I Jupin H Guilley KE Richards G Jonard 1992 Two proteins encoded by Beet necrotic yellow vein virus RNA 3 influence symptom phenotype on leaves EMBO J 11 479 488
13. E Klein D Link A Schirmer M Erhardt D Gilmer 2007 Sequence variation within Beet necrotic yellow vein virus p25 protein influences its oligomerization and isolate pathogenicity on Tetragonia expansa Virus Res 126 53 61
14. R Koenig W Jarausch Y Li U Commandeur W Burgermeister M Gehrke P Luddecke 1991 Effect of recombinant Beet necrotic yellow vein virus with different RNA compositions on mechanically inoculated sugar beets J Gen Virol 72 2243 2246
15. R Koenig P Lüddecke AM Haeberle 1995 Detection of Beet necrotic yellow vein virus strains, variants and mixed infections by examining single-strand conformation polymorphisms of immunocapture RT-PCR products J Gen Virol 76 2051 2055
16. R Koenig AM Haeberle U Commandeur 1997 Detection and characterization of a distinct type of Beet necrotic yellow vein virus RNA 5 in a sugar beet growing area in Europe Arch Virol 142 1499 1504
17. R Koenig BL Lennefors 2000 Molecular analyses of European A, B and P type sources of Beet necrotic yellow vein virus and detection of the rare P type in Kazakhstan Arch Virol 145 1561 1570
18. R Koenig U Kastirr B Holtschulte G Deml M Varrelmann 2008 Distribution of various types and P25 subtypes of Beet necrotic yellow vein virus in Germany and other European countries Arch Virol 153 2139 2144
19. Koenig R, Loss S, Specht J, Varrelmann M, Lüddecke P, Deml G (2009) A single C/U nucleotide substitution changing alanine to valine in the Beet necrotic yellow vein virus P25 protein promotes increased virus accumulation in roots of mechanically inoculated, partially resistant sugar beet seedlings. J Gen Virol (in press)
20. M Kruse R Koenig A Hoffman A Kaufmann U Commandeur AG Solevyev I Savenkov W Burgermeister 1994 Restriction fragment length polymorphism analysis of reverse transcription-PCR products reveals the existance of two major strain groups of Beet necrotic yellow vein virus J Gen Virol 75 1835 1842
21. Lemaire O, Beuve M, Weber C, Schirmer A, Link D, Meunier A, Bragard C, Gilmer D (2003) Etiology and molecular epidemiology of a severe rhizomania disease occurring in confined locations in Europe: hypothesis for the implication of the RNA-3 and/or-5 of Beet necrotic yellow vein virus (BNYVV)-P pathotype. In: Proceedings of the 1st joint IIRBASSBT congress, 26 February-1 March 2003. San Antonio, pp 303-318
22. L Lennefors K Lindsten R Koenig 2000 First record of A and B type Beet necrotic yellow vein virus in sugar beets in Sweden Eur J Plant Pathol 106 199 201
23. BL Lennefors EI Savenkov SB Mukosa JPT Valkonen 2005 Sequence divergence of four soilborne sugarbeet-infecting viruses Virus Genes 31 57 64
24. DW Li JL Yu CG Han T Lui SC Quin Y Lui R Koenig 1999 Detection and nucleotide sequence analysis of Beet necrotic yellow vein virus RNA 5 isolated from China Chin J Biotech 15 461 465
25. M Li T Liu B Wang C Han D Li J Yu 2008 Phylogenetic analysis of Beet necrotic yellow vein virus isolates from China Virus Genes 36 429 432
26. H Liu RT Lewellen 2007 Distribution and molecular characterization of resistance-breaking isolates of Beet necrotic yellow vein virus in the United States Plant Dis 91 847 851
27. A Meunier JF Schmit A Stas N Kutluk C Bragard 2003 Multiplex RT-PCR for the simultaneous detection of Beet necrotic yellow vein virus, Beet soilborne virus, Beet virus Q and their vector Polymyxa betae KESKIN on sugar beet Appl Environ Microbiol 69 2356 2360
28. Meunier A (2005). Typing of Belgian Beet necrotic yellow vein virus, characterization of RNA-2 and RNA-3 coding regions and relationsips with different steps of the virus cycle. PhD thesis, UCL, Louvain-la-Neuve, Belgium, 122p
29. A Meunier JF Schmit C Bragard 2005 Comparison of the Beet necrotic yellow vein virus P75 nucleotide sequences of Belgian type A and type B sources Virus Res 108 15 22
30. M Miyanishi T Kusume M Saito T Tamada 1999 Evidence for three groups of sequence variants of Beet necrotic yellow vein virus RNA 5 Arch Virol 144 879 892
31. Ratti C, Resca R, Lanzoni C, Rubies Autonell C (2006) Amino acid changes in the 25 protein of Beet necrotic yellow vein virus. In: Rush CM, Merz U (eds) Proceedings of the 6th symposium of the international working group on plant viruses with fungal vectors, 5-7 September 2005. Bologna, p 53
32. CM Rush HY Liu RT Lewellen R Acosta-Leal 2006 The continuing saga of rhizomania of sugar beets in the United States Plant Dis 90 4 15
33. N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 425
34. A Schirmer D Link V Cognat B Moury M Beuve A Meunier C Bragard D Gilmer O Lemaire 2005 Phylogenetic analysis of isolates of Beet necrotic yellow vein virus collected worldwide J Gen Virol 86 2897 2911
35. H Sohi M Maleki 2004 Evidence for presence of types A and B of Beet necrotic yellow vein virus (BNYVV) in Iran Virus Genes 29 353 358
36. T Tamada Y Shirako H Abe M Saito T Kiguchi T Harada 1989 Production and pathogenicity of isolates of Beet necrotic yellow vein virus with different numbers of RNA components J Gen Virol 70 3399 3409
37. Tamada T, Kusume T, Uchino H, Kiguchi T, Saito M (1996) Evidence that Beet necrotic yellow vein virus RNA-5 is involved in symptom development of sugar beet roots. In: Sherwood JL, Rush CM (eds) Proceedings of the 3th symposium of the international working group on plant viruses with fungal vectors, Dundee, 6-7 August 1996, pp 49-52
38. T Tamada T Uchino T Kusume M Saito 1999 RNA 3 deletion mutants of Beet necrotic yellow vein virus do not cause rhizomania disease in sugar beets Phytopathology 89 1000 1006
39. Tamada T, Miyanishi M, Kondo H, Chiba H, Han G (2002) Pathogenicity and molecular variability of Beet necrotic yellow vein virus isolates from Europe, Japan, China and The United States. In: Rush CM, Merz U (eds) Proceedings of the 5th symposium of the international working group on plant viruses with fungal vectors, Zurich, 22-25 July 2002, pp 13-16
40. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
41. G Vetter JM Hily E Klein L Schmidlin M Haas T Merkle D Gilmer 2004 Nucleo-cytoplasmic shuttling of the Beet necrotic yellow vein virus RNA-3 encoded P25 protein J Gen Virol 85 2459 2469
42. L Ward R Koenig G Budge C Garrido C McGrath H Stubbley H Boonham 2007 Occurrence of two different types of RNA-5-containing Beet necrotic yellow vein virus in the UK Arch Virol 152 59 73