메뉴 건너뛰기




Volumn 435, Issue 1-2, 2009, Pages 29-35

Lineage specific evolutionary events on SFTPB gene: Alu recombination-mediated deletion (ARMD), exonization, and alternative splicing events

Author keywords

Alternative splicing; ARMD; Exonization; LTR7B; SFTPB gene

Indexed keywords

GENOMIC DNA; RNA;

EID: 61649083715     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2009.01.008     Document Type: Article
Times cited : (14)

References (17)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped Blast and PSI-BLAST: a new generation of protein database search program
    • Altschul S.F., et al. Gapped Blast and PSI-BLAST: a new generation of protein database search program. Nucleic Acids Res. 25 (1997) 3389-3402
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 5044222204 scopus 로고    scopus 로고
    • How did alternative splicing evolve
    • Ast G. How did alternative splicing evolve. Nat. Rev., Genet. 5 (2004) 773-782
    • (2004) Nat. Rev., Genet. , vol.5 , pp. 773-782
    • Ast, G.1
  • 3
    • 0023265675 scopus 로고
    • cDNA and deduced amino acid sequence of human pulmonary surfactant-associated proteolipid, SPL (Phe)
    • Glasser S.W., Korfhagen T.R., Weaver T.E., Pilot-matias T., and Fox J.L. cDNA and deduced amino acid sequence of human pulmonary surfactant-associated proteolipid, SPL (Phe). Proc. Nat. Acad. Sci. USA 84 (1987) 4007-4011
    • (1987) Proc. Nat. Acad. Sci. USA , vol.84 , pp. 4007-4011
    • Glasser, S.W.1    Korfhagen, T.R.2    Weaver, T.E.3    Pilot-matias, T.4    Fox, J.L.5
  • 4
    • 35948983427 scopus 로고    scopus 로고
    • Alu recombination-mediated structural deletions in the chimpanzee genome
    • Han K., et al. Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genet. 3 (2007) 1939-1949
    • (2007) PLoS Genet. , vol.3 , pp. 1939-1949
    • Han, K.1
  • 5
    • 0000625518 scopus 로고
    • Nucleotide and amino acid sequences of pulmonary surfactant protein SP 18 and evidence for cooperation between SP 18 and SP 28-36 in surfactant lipid adsorption
    • Hawgood S., Benson B.J., Schilling J., Damm D., Clements J., and White R.T. Nucleotide and amino acid sequences of pulmonary surfactant protein SP 18 and evidence for cooperation between SP 18 and SP 28-36 in surfactant lipid adsorption. Proc. Nat. Acad. Sci. U. S. A 84 (1987) 66-70
    • (1987) Proc. Nat. Acad. Sci. U. S. A , vol.84 , pp. 66-70
    • Hawgood, S.1    Benson, B.J.2    Schilling, J.3    Damm, D.4    Clements, J.5    White, R.T.6
  • 6
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409 (2001) 860-921
    • (2001) Nature , vol.409 , pp. 860-921
  • 7
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: a database and an electronic journal of repetitive elements
    • Jurka J. Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16 (2000) 418-420
    • (2000) Trends Genet. , vol.16 , pp. 418-420
    • Jurka, J.1
  • 8
    • 0038701605 scopus 로고    scopus 로고
    • The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
    • Lev-Maor G., Sorek R., and Ast G. The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300 (2003) 1288-1291
    • (2003) Science , vol.300 , pp. 1288-1291
    • Lev-Maor, G.1    Sorek, R.2    Ast, G.3
  • 9
    • 0028820282 scopus 로고
    • HERV-H endogenous retroviruses: presence in the New World branch but amplification in the Old World primate lineage
    • Mager D.L., and Freeman J.D. HERV-H endogenous retroviruses: presence in the New World branch but amplification in the Old World primate lineage. Virology 213 (1995) 395-404
    • (1995) Virology , vol.213 , pp. 395-404
    • Mager, D.L.1    Freeman, J.D.2
  • 10
    • 38149066750 scopus 로고    scopus 로고
    • SERpredict: detection of tissue-or tumor-specific isoforms generated through exonization of transposable elements
    • Mersch B., Sela N., Ast G., Suhai S., and Wagenblatt A.H. SERpredict: detection of tissue-or tumor-specific isoforms generated through exonization of transposable elements. BMC Genet. 8 (2007) 78-89
    • (2007) BMC Genet. , vol.8 , pp. 78-89
    • Mersch, B.1    Sela, N.2    Ast, G.3    Suhai, S.4    Wagenblatt, A.H.5
  • 11
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko A., and Li W.H. Transposable elements are found in a large number of human protein-coding genes. Trends Genet. 17 (2001) 619-621
    • (2001) Trends Genet. , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.2
  • 12
    • 34748869000 scopus 로고    scopus 로고
    • Comparative analysis of transposed element insertion within human and mouse genes reveals Alu's unique role in shaping the human transcriptome
    • Sela N., Mersch B., Gal-Mark N., Lev-Maor G., Hots-Wagenblatt A., and Ast G. Comparative analysis of transposed element insertion within human and mouse genes reveals Alu's unique role in shaping the human transcriptome. Genome Biol. 8 (2007) R127
    • (2007) Genome Biol. , vol.8
    • Sela, N.1    Mersch, B.2    Gal-Mark, N.3    Lev-Maor, G.4    Hots-Wagenblatt, A.5    Ast, G.6
  • 13
    • 33745244299 scopus 로고    scopus 로고
    • Human genomic deletions mediated by recombination between Alu elements
    • Sen S.K., et al. Human genomic deletions mediated by recombination between Alu elements. Am. J. Hum. Genet. 79 (2006) 41-53
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 41-53
    • Sen, S.K.1
  • 14
    • 33748983029 scopus 로고    scopus 로고
    • Transcriptional control of the HERV-H LTR element of the GSDML gene in human tissues and cancer cells
    • Sin H.S., et al. Transcriptional control of the HERV-H LTR element of the GSDML gene in human tissues and cancer cells. Arch. Virol. 151 (2006) 1985-1994
    • (2006) Arch. Virol. , vol.151 , pp. 1985-1994
    • Sin, H.S.1
  • 15
    • 35448936055 scopus 로고    scopus 로고
    • Long terminal repeat of human endogenous retrovirus H family provide alternative polyadenylation signals to NADSYN1 gene
    • Sin H.S., et al. Long terminal repeat of human endogenous retrovirus H family provide alternative polyadenylation signals to NADSYN1 gene. Korea J. Genet. 29 (2007) 395-401
    • (2007) Korea J. Genet. , vol.29 , pp. 395-401
    • Sin, H.S.1
  • 16
    • 0036064148 scopus 로고    scopus 로고
    • Alu-containing exons are alternatively spliced
    • Sorek R., Ast G., and Graur D. Alu-containing exons are alternatively spliced. Genome Res. 12 (2002) 1060-1067
    • (2002) Genome Res. , vol.12 , pp. 1060-1067
    • Sorek, R.1    Ast, G.2    Graur, D.3
  • 17
    • 0028935367 scopus 로고
    • Mapping the human pulmonary surfactant-associated protein B gene (SFTP3) to chromosome 2p12 → p11.2
    • Vamvakopoulos N.C., Modi W.S., and Floros J. Mapping the human pulmonary surfactant-associated protein B gene (SFTP3) to chromosome 2p12 → p11.2. Cytogenet. Cell Genet. 68 (1995) 8-10
    • (1995) Cytogenet. Cell Genet. , vol.68 , pp. 8-10
    • Vamvakopoulos, N.C.1    Modi, W.S.2    Floros, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.