-
1
-
-
34347330024
-
Implementing the U.S. FDA guidance on pharmacogenomic data submissions
-
DOI 10.1002/em.20294
-
Goodsaid F, Frueh FW: Implementing the US FDA guidance on pharmacogenomic data submissions. Environ. Mol. Mutagen. 48, 354-358 (2007). (Pubitemid 47011763)
-
(2007)
Environmental and Molecular Mutagenesis
, vol.48
, Issue.5
, pp. 354-358
-
-
Goodsaid, F.1
Frueh, F.W.2
-
2
-
-
33748494248
-
A framework for the use of genomics at the EPA
-
Dix DJ, Gallagher K, Benson WH, et al. A framework for the use of genomics at the EPA. Nat. Biotechnol. 24, 1108-1111 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1108-1111
-
-
Dix, D.J.1
Gallagher, K.2
Benson, W.H.3
-
3
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements
-
MAQC Consortium
-
MAQC Consortium: The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24, 1151-1161 (2006).
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 1151-1161
-
-
-
4
-
-
0041336612
-
Effects of atmospheric ozone on microarray data quality
-
DOI 10.1021/ac034241b
-
Fare TL Coffey EM, Dai H, et al. Effects of atmospheric ozone on microarray data quality. Anal. Chem. 75, 4672-4675 (2003). (Pubitemid 37082262)
-
(2003)
Analytical Chemistry
, vol.75
, Issue.17
, pp. 4672-4675
-
-
Fare, T.L.1
Coffey, E.M.2
Dai, H.3
He, Y.D.4
Kessler, D.A.5
Kilian, K.A.6
Koch, J.E.7
LeProustt, E.8
Marton, M.J.9
Meyer, M.R.10
Stoughton, R.B.11
Tokiwa, G.Y.12
Wang, Y.13
-
5
-
-
33847221847
-
Elimination of laboratory ozone leads to a dramatic improvement in the reproducibility of microarray gene expression measurements
-
DOI 10.1186/1472-6750-7-8
-
Branham WS, Melvin CD, Han T, et al. Elimination of laboratory ozone leads to a dramatic improvement in the reproducibility of microarray gene expression measurements. BMC Biotechnol. 12, 8 (2007). (Pubitemid 46306405)
-
(2007)
BMC Biotechnology
, vol.7
, pp. 8
-
-
Branham, W.S.1
Melvin, C.D.2
Han, T.3
Desai, V.G.4
Moland, C.L.5
Scully, A.T.6
Fuscoe, J.C.7
-
6
-
-
27644507562
-
Microarray scanner calibration curves: Characteristics and implications
-
DOI 10.1186/1471-2105-6-S2-S11
-
Shi L, Tong W, Su Z, et al. Microarray scanner calibration curves: characteristics and implications. BMC Bioinformatics 6, S11 (2005). (Pubitemid 41574316)
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 2
-
-
Shi, L.1
Tong, W.2
Su, Z.3
Han, T.4
Han, J.5
Puri, R.K.6
Fang, H.7
Frueh, F.W.8
Goodsaid, F.M.9
Guo, L.10
Branham, W.S.11
Chen, J.J.12
Xu, Z.A.13
Harris, S.C.14
Hong, H.15
Xie, Q.16
Perkins, R.G.17
Fuscoe, J.C.18
-
7
-
-
27144548491
-
External RNA Controls Consortium: The External RNA Controls Consortium: A progress report
-
External RNA Controls Consortium: The External RNA Controls Consortium: a progress report. Nat. Methods 2, 731-734 (2005).
-
(2005)
Nat. Methods
, vol.2
, pp. 731-734
-
-
-
8
-
-
27844529344
-
External RNA Controls Consortium: Proposed methods for testing and selecting the ERCC external RNA controls
-
External RNA Controls Consortium: Proposed methods for testing and selecting the ERCC external RNA controls. BMC Genomics 6, 150 (2005).
-
(2005)
BMC Genomics
, vol.6
, pp. 150
-
-
-
9
-
-
0033636288
-
Implementation of reference systems in laboratory medicine
-
Mueller MM: Implementation of reference systems in laboratory medicine. Clin. Chem. 46, 1907-1909 (2000).
-
(2000)
Clin. Chem.
, vol.46
, pp. 1907-1909
-
-
Mueller, M.M.1
-
10
-
-
31144477774
-
Use of a mixed tissue RNA design for performance assessments on multiple microarray formats
-
Thompson KL, Rosenzweig BA, Pine PS, et al. Use of a mixed tissue RNA design for performance assessments on multiple microarray formats. Nucleic Acids Res. 33, E187 (2005).
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Thompson, K.L.1
Rosenzweig, B.A.2
Pine, P.S.3
-
11
-
-
20944433525
-
Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action
-
DOI 10.1016/j.jbiotec.2005.03.022, PII S0168165605001513
-
Ganter B, Tugendreich S, Pearson CI, et al. Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action. J. Biotechnol. 119, 219-244 (2005). (Pubitemid 41253686)
-
(2005)
Journal of Biotechnology
, vol.119
, Issue.3
, pp. 219-244
-
-
Ganter, B.1
Tugendreich, S.2
Pearson, C.I.3
Ayanoglu, E.4
Baumhueter, S.5
Bostian, K.A.6
Brady, L.7
Browne, L.J.8
Calvin, J.T.9
Day, G.-J.10
Breckenridge, N.11
Dunlea, S.12
Eynon, B.P.13
Furness, L.M.14
Ferng, J.15
Fielden, M.R.16
Fujimoto, S.Y.17
Gong, L.18
Hu, C.19
Idury, R.20
Judo, M.S.B.21
Kolaja, K.L.22
Lee, M.D.23
McSorley, C.24
Minor, J.M.25
Nair, R.V.26
Natsoulis, G.27
Nguyen, P.28
Nicholson, S.M.29
Pham, H.30
Roter, A.H.31
Sun, D.32
Tan, S.33
Thode, S.34
Tolley, A.M.35
Vladimirova, A.36
Yang, J.37
Zhou, Z.38
Jarnagin, K.39
more..
-
12
-
-
3042565113
-
The limits of log-ratios
-
DOI 10.1186/1472-6750-4-3
-
Sharov V, Kwong KY, Frank B, et al. The limits of log-ratios. BMC Biotechnol. 22, 1-6 (2004). (Pubitemid 38846484)
-
(2004)
BMC Biotechnology
, vol.4
, pp. 3
-
-
Sharov, V.1
Kwong, K.Y.2
Frank, B.3
Chen, E.4
Hasseman, J.5
Gaspard, R.6
Yu, Y.7
Yang, I.8
Quackenbush, J.9
-
13
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
Hanley JA, McNeil BJ: The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143, 29-36 (1982). (Pubitemid 12142173)
-
(1982)
Radiology
, vol.143
, Issue.1
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
-
14
-
-
0023890867
-
Measuring the accuracy of diagnostic systems
-
Swets JA: Measuring the accuracy of diagnostic systems. Science 240, 1285-1293 (1988).
-
(1988)
Science
, vol.240
, pp. 1285-1293
-
-
Swets, J.A.1
-
15
-
-
0037944217
-
Microarray standard data set and figures of merit for comparing data processing methods and experiment designs
-
DOI 10.1093/bioinformatics/btg126
-
He YD, Dai H, Schadt EE, et al. Microarray standard data set and figures of merit for comparing data processing methods and experiment designs. Bioinformatics 19, 956-965 (2003). (Pubitemid 36675816)
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 956-965
-
-
He, Y.D.1
Dai, H.2
Schadt, E.E.3
Cavet, G.4
Edwards, S.W.5
Stepaniants, S.B.6
Duenwald, S.7
Kleinhanz, R.8
Jones, A.R.9
Shoemaker, D.D.10
Stoughton, R.B.11
-
16
-
-
22144461265
-
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
-
Choe SE, Boutros M, Michelson AM, Church GM, Halfon MS: Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol. 6, R16 (2005).
-
(2005)
Genome Biol.
, vol.6
-
-
Choe, S.E.1
Boutros, M.2
Michelson, A.M.3
Church, G.M.4
Halfon, M.S.5
-
17
-
-
1342330572
-
A benchmark for Affymetrix GeneChip expression measures
-
DOI 10.1093/bioinformatics/btg410
-
Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP: A benchmark for Affymetrix GeneChip expression measures. Bioinformatics 20, 323-331 (2004). (Pubitemid 38262763)
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 323-331
-
-
Cope, L.M.1
Irizarry, R.A.2
Jaffee, H.A.3
Wu, Z.4
Speed, T.P.5
-
18
-
-
33748482861
-
Using RNA sample titrations to assess microarray platform performance and normalization techniques
-
DOI 10.1038/nbt1241, PII NBT1241
-
Shippy R, Fulmer-Smentek S, Jensen RV, et al. Using RNA sample titrations to assess microarray platform performance and normalization techniques. Nat. Biotechnol. 24, 1123-1131 (2006). (Pubitemid 44359724)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.9
, pp. 1123-1131
-
-
Shippy, R.1
Fulmer-Smentek, S.2
Jensen, R.V.3
Jones, W.D.4
Wolber, P.K.5
Johnson, C.D.6
Pine, P.S.7
Boysen, C.8
Guo, X.9
Chudin, E.10
Sun, Y.A.11
Willey, J.C.12
Thierry-Mieg, J.13
Thierry-Mieg, D.14
Setterquist, R.A.15
Wilson, M.16
Lucas, A.B.17
Novoradovskaya, N.18
Papallo, A.19
Turpaz, Y.20
Baker, S.C.21
Warrington, J.A.22
Shi, L.23
Herman, D.24
more..
-
19
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP: Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31, E15 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
20
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264 (2003).
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
-
21
-
-
1542290446
-
Expression profiling-best practices for data generation and interpretation in clinical trials
-
Tumor Analysis Best Practices Working Group
-
Tumor Analysis Best Practices Working Group: Expression profiling -best practices for data generation and interpretation in clinical trials. Nat. Rev. Genetics 5, 229-237 (2004).
-
(2004)
Nat. Rev. Genetics
, vol.5
, pp. 229-237
-
-
-
22
-
-
33847240050
-
Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions
-
DOI 10.1186/1471-2105-7-S2-S17
-
Han T, Melvin CD, Shi L, et al. Improvement in the reproducibility and accuracy of DNA microarray quantification by optimizing hybridization conditions. BMC Bioinformatics 7, S17 (2006). (Pubitemid 46442962)
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL.2
-
-
Han, T.1
Melvin, C.D.2
Shi, L.3
Branham, W.S.4
Moland, C.L.5
Pine, P.S.6
Thompson, K.L.7
Fuscoe, J.C.8
-
23
-
-
54349106642
-
Assessment of repeated microarray experiments using mixed tissue RNA reference samples
-
Mongan MA, Higgins MA, Pine PS, Afshari CA, Hamadeh HK: Assessment of repeated microarray experiments using mixed tissue RNA reference samples. Biotechniques 45, 283-292 (2008).
-
(2008)
Biotechniques
, vol.45
, pp. 283-292
-
-
Mongan, M.A.1
Higgins, M.A.2
Pine, P.S.3
Afshari, C.A.4
Hamadeh, H.K.5
-
24
-
-
34347337394
-
Review of the literature examining the correlation among DNA microarray technologies
-
Yauk CL, Berndt ML: Review of the literature examining the correlation among DNA microarray technologies. Environ. Mol. Mutagen. 48, 380-394 (2007).
-
(2007)
Environ. Mol. Mutagen.
, vol.48
, pp. 380-394
-
-
Yauk, C.L.1
Berndt, M.L.2
-
25
-
-
27144486151
-
Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
-
DOI 10.1093/nar/gki890
-
Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P: Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Res. 33, 5914-5923 (2005). (Pubitemid 41742611)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.18
, pp. 5914-5923
-
-
Barnes, M.1
Freudenberg, J.2
Thompson, S.3
Aronow, B.4
Pavlidis, P.5
-
26
-
-
61349198183
-
Comparison of the diagnostic performance of human whole genome microarrays using mixed-tissue RNA reference samples
-
doi 10.1016/j.toxlet.2008.08.018 Epub Ahead of Print)
-
Thompson KL, Pine PS: Comparison of the diagnostic performance of human whole genome microarrays using mixed-tissue RNA reference samples. Toxicol. Lett. doi 10.1016/j. toxlet.2008.08.018 (2008) (Epub ahead of print)
-
(2008)
Toxicol. Lett.
-
-
Thompson, K.L.1
Pine, P.S.2
-
27
-
-
34447321058
-
Modeling nonlinearity in dilution design microarray data
-
DOI 10.1093/bioinformatics/btm002
-
Zheng X, Huang HC, Li W, Liu P, Li QZ, Liu Y: Modeling nonlinearity in dilution design microarray data. Bioinformatics 23, 1339-1347 (2007). (Pubitemid 47050515)
-
(2007)
Bioinformatics
, vol.23
, Issue.11
, pp. 1339-1347
-
-
Zheng, X.1
Huang, H.-C.2
Li, W.3
Liu, P.4
Li, Q.-Z.5
Liu, Y.6
-
28
-
-
33747888862
-
Standards in Gene Expression Microarray Experiments
-
DOI 10.1016/S0076-6879(06)11005-8, PII S0076687906110058, DNA Microarrays, Part B: Databases and Statistics
-
Salit M: Standards in gene expression microarray experiments. Methods Enzymol. 411, 63-78 (2006). (Pubitemid 44291421)
-
(2006)
Methods in Enzymology
, vol.411
, pp. 63-78
-
-
Salit, M.1
-
29
-
-
77957325445
-
-
ArrayExpress at the European Bioinformatics Institute
-
ArrayExpress at the European Bioinformatics Institute http://www.ebi.ac.uk/microarray-as/ae/
-
-
-
-
30
-
-
77957306897
-
-
Critical Path Opportunities List. US Food and Drug Administration, Accessed March
-
Critical Path Opportunities List. US Food and Drug Administration, Accessed March 2006. www.fda.gov/oc/initiatives/criticalpath/reports/opp-list. pdf
-
(2006)
-
-
-
31
-
-
77955630483
-
-
US System of Oversight of Genetic Testing: A Response to the Charge of the Secretary of Health and Human Services
-
Report of the Secretarys Advisory Committee on Genetics, Health, and Society. US System of Oversight of Genetic Testing: A Response to the Charge of the Secretary of Health and Human Services (2008) www4.od.nih.gov/oba/sacghs/ reports/SACGHS-oversight-report.pdf
-
(2008)
Report of the Secretarys Advisory Committee on Genetics, Health, and Society
-
-
|