-
1
-
-
33847307402
-
Assembling millions of short DNA sequences using SSAKE
-
10.1093/bioinformatics/btl629 17158514
-
Warren RL Sutton GG Jones SJM Holt RA Assembling millions of short DNA sequences using SSAKE Bioinformatics 2007, 23(4):500-501 10.1093/ bioinformatics/btl629 17158514
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 500-501
-
-
Warren, R.L.1
Sutton, G.G.2
Jones, S.J.M.3
Holt, R.A.4
-
2
-
-
35948929094
-
SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
-
2045152 17908823 10.1101/gr.6435207
-
Dohm JC Lottaz C Borodina T Himmelbauer H SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing Genome Research 2007, 17:1697-1706 2045152 17908823 10.1101/gr.6435207
-
(2007)
Genome Research
, vol.17
, pp. 1697-1706
-
-
Dohm, J.C.1
Lottaz, C.2
Borodina, T.3
Himmelbauer, H.4
-
3
-
-
1242281253
-
The greedy path-merging algorithm for contig scaffolding
-
10.1145/585265.585267
-
Huson D Reinert K Myers EW The greedy path-merging algorithm for contig scaffolding Journal of the ACM (JACM) 2002, 49(5):603-615 10.1145/ 585265.585267
-
(2002)
Journal of the ACM (JACM)
, vol.49
, Issue.5
, pp. 603-615
-
-
Huson, D.1
Reinert, K.2
Myers, E.W.3
-
4
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
431765 271968 10.1073/pnas.74.12.5463
-
Sanger F Nicklen S Coulson A DNA sequencing with chain-terminating inhibitors Proc Natl Acad Sci USA 1977, 5463-7 431765 271968 10.1073/ pnas.74.12.5463
-
(1977)
Proc Natl Acad Sci USA
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.3
-
5
-
-
1942499454
-
Advanced sequencing technologies: Methods and goals
-
10.1038/nrg1325
-
Shendure J Mitra R Church G Advanced sequencing technologies: Methods and goals Nature Rev Gen 2004, 5:335-344 10.1038/nrg1325
-
(2004)
Nature Rev Gen
, vol.5
, pp. 335-344
-
-
Shendure, J.1
Mitra, R.2
Church, G.3
-
6
-
-
0034130561
-
Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays
-
10.1038/76469
-
Brenner S Johnson M Bridgham J Golda G Lloyd D Johnson D Luo S McCurdy S Foy M Ewan M et al Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays Nat Biotechnol 2003, 18:630-634 10.1038/76469
-
(2003)
Nat Biotechnol
, vol.18
, pp. 630-634
-
-
Brenner, S.1
Johnson, M.2
Bridgham, J.3
Golda, G.4
Lloyd, D.5
Johnson, D.6
Luo, S.7
McCurdy, S.8
Foy, M.9
Ewan, M.10
-
7
-
-
0346753823
-
Ultrafast DNA sequencing
-
10.1038/nbt1203-1425
-
Kling J Ultrafast DNA sequencing Nat Biotechol 2003, 21:1425-1427 10.1038/nbt1203-1425
-
(2003)
Nat Biotechol
, vol.21
, pp. 1425-1427
-
-
Kling, J.1
-
8
-
-
0037396691
-
Efficient high-throughput resequencing of genomic DNA
-
430165 12654721 10.1101/gr.886203
-
Miller R Duan S Lovins E Kloss E Kwok PY Efficient high-throughput resequencing of genomic DNA Genome Res 2003, 13:717-720 430165 12654721 10.1101/gr.886203
-
(2003)
Genome Res
, vol.13
, pp. 717-720
-
-
Miller, R.1
Duan, S.2
Lovins, E.3
Kloss, E.4
Kwok, P.Y.5
-
9
-
-
0032540905
-
DNA sequencing: A sequencing method based on real-time pyrophosphate
-
10.1126/science.281.5375.363 9705713
-
Ronaghi M Uhlen M Nyren P DNA sequencing: A sequencing method based on real-time pyrophosphate Science 1998, 281:363-365 10.1126/ science.281.5375.363 9705713
-
(1998)
Science
, vol.281
, pp. 363-365
-
-
Ronaghi, M.1
Uhlen, M.2
Nyren, P.3
-
11
-
-
0033573165
-
In situ localized amplification and contact replication of many individual DNA molecules
-
148085 9847130 10.1093/nar/27.24.e34
-
Mitra R Church G In situ localized amplification and contact replication of many individual DNA molecules Nucleic Acids Research 1999, 27:1-6 148085 9847130 10.1093/nar/27.24.e34
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 1-6
-
-
Mitra, R.1
Church, G.2
-
13
-
-
0037388048
-
Sequence Information can be obtained from single DNA molecules
-
153030 12651960 10.1073/pnas.0230489100
-
Braslavsky I Hebert B Kartalov E Quake S Sequence Information can be obtained from single DNA molecules PNAS 2003, 100:3960-3964 153030 12651960 10.1073/pnas.0230489100
-
(2003)
PNAS
, vol.100
, pp. 3960-3964
-
-
Braslavsky, I.1
Hebert, B.2
Kartalov, E.3
Quake, S.4
-
14
-
-
41749104588
-
Single-molecule DNA sequencing of a viral genome
-
10.1126/science.1150427 18388294
-
Harris T Buzby P et al Single-molecule DNA sequencing of a viral genome Science 2008, 106-9 10.1126/science.1150427 18388294
-
(2008)
Science
, pp. 106-109
-
-
Harris, T.1
Buzby, P.2
-
15
-
-
0029197192
-
Combinatorial Algorithms for DNA Sequence Assembly
-
10.1007/BF01188580
-
Kececioglu J Myers E Combinatorial Algorithms for DNA Sequence Assembly Algorithmica 1995, 13:7-51 10.1007/BF01188580
-
(1995)
Algorithmica
, vol.13
, pp. 7-51
-
-
Kececioglu, J.1
Myers, E.2
-
16
-
-
43149086380
-
ALLPATHS: De novo assembly of whole-genome shotgun microreads
-
2336810 18340039 10.1101/gr.7337908
-
Butler J MacCalluma I Kleber M Shlyakhter IA Belmonte MK Lander ES Nusbaum C Jaffe DB ALLPATHS: De novo assembly of whole-genome shotgun microreads Genome Research 2008, 18:810-820 2336810 18340039 10.1101/ gr.7337908
-
(2008)
Genome Research
, vol.18
, pp. 810-820
-
-
Butler, J.1
MacCalluma, I.2
Kleber, M.3
Shlyakhter, I.A.4
Belmonte, M.K.5
Lander, E.S.6
Nusbaum, C.7
Jaffe, D.B.8
-
17
-
-
68249131304
-
Ab Initio Whole Genome Shotgun Assembly With Mated Short Reads
-
Medvedev P Brudno M Ab Initio Whole Genome Shotgun Assembly With Mated Short Reads RECOMB 2008.
-
(2008)
RECOMB
-
-
Medvedev, P.1
Brudno, M.2
-
18
-
-
43149115851
-
Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs
-
2336801 18349386
-
Zerbino D Birney E Velvet: Algorithms for De Novo Short Read Assembly Using De Bruijn Graphs Genome Research 2008. 2336801 18349386
-
(2008)
Genome Research
-
-
Zerbino, D.1
Birney, E.2
-
20
-
-
4544263565
-
Fragment assembly with short reads
-
10.1093/bioinformatics/bth205 15059830
-
Chaisson M Pevzner PA Tang H Fragment assembly with short reads Bioinformatics 2004, 20(13):2067-2074 10.1093/bioinformatics/bth205 15059830
-
(2004)
Bioinformatics
, vol.20
, Issue.13
, pp. 2067-2074
-
-
Chaisson, M.1
Pevzner, P.A.2
Tang, H.3
-
22
-
-
56149112104
-
Whole-genome sequencing and assembly with high-throughput, short-read technologies
-
1871613 17534434
-
Sundquist A Ronaghi M Tang H Pevzner P Batzoglou S Whole-genome sequencing and assembly with high-throughput, short-read technologies PLoS ONE 2007:2(5) 1871613 17534434
-
(2007)
PLoS ONE
, vol.2
, Issue.5
-
-
Sundquist, A.1
Ronaghi, M.2
Tang, H.3
Pevzner, P.4
Batzoglou, S.5
-
23
-
-
0037263854
-
The Phusion Assembler
-
430959 12529309 10.1101/gr.731003
-
Mullikin J Ning Z The Phusion Assembler Genome Res 2003, 13:81-90 430959 12529309 10.1101/gr.731003
-
(2003)
Genome Res
, vol.13
, pp. 81-90
-
-
Mullikin, J.1
Ning, Z.2
-
25
-
-
43149085041
-
De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
-
2336802 18332092
-
Hernandez D Francois P Farinelli L Osteras M Schrenzel J De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer Genome Research 2008. 2336802 18332092
-
(2008)
Genome Research
-
-
Hernandez, D.1
Francois, P.2
Farinelli, L.3
Osteras, M.4
Schrenzel, J.5
-
26
-
-
0031955518
-
Base-Calling of Automated Sequencer Traces Phred. I. Using Accuracy Assessment
-
9521921
-
Ewing B Hillier L Wendl MC Green P Base-Calling of Automated Sequencer Traces Phred. I. Using Accuracy Assessment Genome Res 1998, 8:175-185 9521921
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
27
-
-
0031978181
-
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
-
9521922
-
Ewing B Green P Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities Genome Res 1998, 8:186-194 9521922
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
|