Efficient high-throughput resequencing of genomic DNA

Genome Research

Volumn 13, Issue 4, 2003, Pages 717-720

  Miller, Raymond D ^a   Duan, Shenghui ^a   Lovins, Elizabeth G ^b   Kloss, Ellen F ^a   Kwok, Pui Yan ^a  

^a WASHINGTON UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; PRIMER DNA;

ALLELE; CAPILLARY ELECTROPHORESIS; CLINICAL PROTOCOL; COMPUTER PROGRAM; CONTROLLED STUDY; DNA DETERMINATION; DNA SEQUENCE; GENE AMPLIFICATION; GENE FREQUENCY; GENE TARGETING; GENETIC VARIABILITY; HUMAN; HUMAN GENOME; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVIEW; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENCE;

ALLELES; DNA; DNA PRIMERS; GENE FREQUENCY; GLUCURONIDASE; HUMANS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

EID: 0037396691     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.886203     Document Type: Review

References (17)

1. Altshuler, D., Pollara, V.J., Cowles, C.R., Van Etten, W.J., Baldwin, J., Linton, L., and Lander, E.S. 2000. An SNP map of the human genome generated by reduced representation shotgun sequencing. Nature 407: 513-516.
2. Bartek, J., Iggo, R., Vojtesek, B., and Lane, D.P. 1991. Asymmetric PCR-based strategy for genetic analysis of the p53 tumor suppressor gene in cell lines and tumor tissues. Neoplasma 38: 93-99.
3. Gyllensten, U.B. and Erlich, H.A. 1989. Ancient roots for polymorphism at the HLA-DQ α locus in primates. Proc. Natl. Acad. Sci. 86: 9986-9990.
4. Holden, A.L. 2002. The SNP consortium: Summary of a private consortium effort to develop an applied map of the human genome. Biotechniques 32: S22-S26.
5. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
6. The International SNP Map Working Group. 2001. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409: 928-933.
7. Kaltenboeck, B., Spatafora, J.W., Zhang, X., Kousoulas, K.G., Blackwell, M., and Storz, J. 1992. Efficient production of single-stranded DNA as long as 2 kb for sequencing of PCR-amplified DNA. Biotechniques 12: 164-171.
8. Kilger, C. and Paabo, S. 1997. Direct DNA sequence determination from total genomic DNA. Nucleic Acids Res. 25: 2032-2034.
9. Kwok, P.Y., Carlson, C., Yager, T.D., Ankener, W., and Nickerson, D.A. 1994. Comparative analysis of human DNA variations by fluorescence-based sequencing of PCR products. Genomics 23: 138-144.
10. Liu, Y.G., Mitsukawa, N., and Whittier, R.F. 1993. Rapid sequencing of unpurified PCR products by thermal asymmetric PCR cycle sequencing using unlabeled sequencing primers. Nucleic Acids Res. 21: 3333-3334.
11. Marth, G.T., Korf, I., Yandell, M.D., Yeh, R.T., Gu, Z., Zakeri, H., Stitziel, N.O., Hillier, L., Kwok, P.Y., and Gish, W.R. 1999. A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23: 452-456.
12. Marth, G., Yeh, R., Minton, M., Donaldson, R., Li, Q., Duan, S., Davenport, R., Miller, R.D., and Kwok, P.Y. 2001. Single-nucleotide polymorphisms in the public domain: How useful are they? Nat. Genet. 27: 371-372.
13. Miller, R.D., Taillon-Miller, P., and Kwok, P.Y. 2001. Regions of low single-nucleotide polymorphism incidence in human and orangutan Xq: Deserts and recent coalescences. Genomics 71: 78-88.
14. Rozen, S. and Skaletsky, H. 2000. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
15. Taillon-Miller, P., Gu, Z.J., Li, Q., Hillier, L., and Kwok, P.Y. 1998. Overlapping genomic sequences-A treasure trove of single-nucleotide polymorphisms. Genome Res. 8: 748-754.
16. Taillon-Miller, P., Piernot, E.E., and Kwok, P.Y. 1999. Efficient approach to unique single-nucleotide polymorphism discovery. Genome Res. 9: 499-505.
17. Vieux, E.F., Kwok, P.Y., and Miller, R.D. 2002. Primer design for PCR and sequencing in high-throughput analysis of SNPs. Biotechniques 32: S28-S32.