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Volumn 10, Issue SUPPL. 1, 2009, Pages

REMAS: A new regression model to identify alternative splicing events from exon array data

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE SPLICING; COMPREHENSIVE ANALYSIS; HIERARCHICAL MODEL; LASSO REGRESSIONS; REGULATORY MECHANISM; SMALL SAMPLE SIZE; TWO-STEP ALGORITHMS; VARIABLE SELECTION;

EID: 60949085101     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-S1-S18     Document Type: Conference Paper
Times cited : (4)

References (22)
  • 2
    • 34548758543 scopus 로고    scopus 로고
    • Splicing in disease: Disruption of the splicing code and the decoding machinery
    • 10.1038/nrg2164 17726481
    • Wang GS Cooper TA Splicing in disease: Disruption of the splicing code and the decoding machinery Nature Reviews Genetics 2007, 8(10):749-761 10.1038/nrg2164 17726481
    • (2007) Nature Reviews Genetics , vol.8 , Issue.10 , pp. 749-761
    • Wang, G.S.1    Cooper, T.A.2
  • 3
    • 33746259640 scopus 로고    scopus 로고
    • Splicing regulators: Targets and drugs
    • 1414078 16356274
    • Yeo GWM Splicing regulators: Targets and drugs Genome Biology 2005, 6(12) 1414078 16356274
    • (2005) Genome Biology , vol.6 , Issue.12
    • Yeo, G.W.M.1
  • 4
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • 10.1038/ng0102-13 11753382
    • Modrek B Lee C A genomic view of alternative splicing Nature Genetics 2002, 30(1):13-19 10.1038/ng0102-13 11753382
    • (2002) Nature Genetics , vol.30 , Issue.1 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 6
    • 0037012922 scopus 로고    scopus 로고
    • Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
    • 10.1126/science.1069415 11988574
    • Clark TA Sugnet CW Ares M Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays Science 2002, 296(5569):907-910 10.1126/science.1069415 11988574
    • (2002) Science , vol.296 , Issue.5569 , pp. 907-910
    • Clark, T.A.1    Sugnet, C.W.2    Ares, M.3
  • 9
    • 19944365069 scopus 로고    scopus 로고
    • Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
    • 10.1016/j.molcel.2004.12.004 15610736
    • Pan Q Shai O Misquitta C Zhang W Saltzman AL Mohammad N Babak T Siu H Hughes TR Morris QD et al Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform Molecular Cell 2004, 16(6):929-941 10.1016/j.molcel.2004.12.004 15610736
    • (2004) Molecular Cell , vol.16 , Issue.6 , pp. 929-941
    • Pan, Q.1    Shai, O.2    Misquitta, C.3    Zhang, W.4    Saltzman, A.L.5    Mohammad, N.6    Babak, T.7    Siu, H.8    Hughes, T.R.9    Morris, Q.D.10
  • 11
    • 33644864739 scopus 로고    scopus 로고
    • Inferring global levels of alternative splicing isoforms using a generative model of microarray data
    • 10.1093/bioinformatics/btk028 16403798
    • Shai O Morris QD Blencowe BJ Frey BJ Inferring global levels of alternative splicing isoforms using a generative model of microarray data Bioinformatics 2006, 22(5):606-613 10.1093/bioinformatics/btk028 16403798
    • (2006) Bioinformatics , vol.22 , Issue.5 , pp. 606-613
    • Shai, O.1    Morris, Q.D.2    Blencowe, B.J.3    Frey, B.J.4
  • 13
    • 16544378889 scopus 로고    scopus 로고
    • Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data
    • Le K Mitsouras K Roy M Wang Q Xu Q Nelson SF Lee C Detecting tissue-specific regulation of alternative splicing as a qualitative change in microarray data Nucleic Acids Research 2004, 32(22)
    • (2004) Nucleic Acids Research , vol.32 , Issue.22
    • Le, K.1    Mitsouras, K.2    Roy, M.3    Wang, Q.4    Xu, Q.5    Nelson, S.F.6    Lee, C.7
  • 15
    • 34250795169 scopus 로고    scopus 로고
    • Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays
    • 10.1158/0008-5472.CAN-06-2869 17575129
    • French PJ Peeters J Horsman S Duijm E Siccama I Bent van den MJ Luider TM Kros JM Spek van der P Smitt PAS Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays Cancer Research 2007, 67(12):5635-5642 10.1158/ 0008-5472.CAN-06-2869 17575129
    • (2007) Cancer Research , vol.67 , Issue.12 , pp. 5635-5642
    • French, P.J.1    Peeters, J.2    Horsman, S.3    Duijm, E.4    Siccama, I.5    Bent, M.J.6    Luider, T.M.7    Kros, J.M.8    Spek, P.9    Smitt, P.A.S.10
  • 17
    • 34250756005 scopus 로고    scopus 로고
    • Probe Selection and Expression Index Computation of Affymetrix Exon Arrays
    • 1762343 17183719 10.1371/journal.pone.0000088
    • Xing Y Kapur K Wong WH Probe Selection and Expression Index Computation of Affymetrix Exon Arrays PLoS ONE 2006, 1(1):e88 1762343 17183719 10.1371/journal.pone.0000088
    • (2006) PLoS ONE , vol.1 , Issue.1
    • Xing, Y.1    Kapur, K.2    Wong, W.H.3
  • 18
    • 34548853750 scopus 로고    scopus 로고
    • Exon arrays provide accurate assessments of gene expression
    • 1929160 17504534
    • Kapur K Xing Y Ouyang Z Wong WH Exon arrays provide accurate assessments of gene expression Genome Biology 2007, 8(5) 1929160 17504534
    • (2007) Genome Biology , vol.8 , Issue.5
    • Kapur, K.1    Xing, Y.2    Ouyang, Z.3    Wong, W.H.4
  • 20
    • 33745037942 scopus 로고    scopus 로고
    • Variable window binding for mutually exclusive alternative splicing
    • 1431710 16507134 10.1186/gb-2006-7-1-r2
    • Anastassiou D Liu H Varadan V Variable window binding for mutually exclusive alternative splicing Genome Biology 2006, 7(1):R2 1431710 16507134 10.1186/gb-2006-7-1-r2
    • (2006) Genome Biology , vol.7 , Issue.1
    • Anastassiou, D.1    Liu, H.2    Varadan, V.3
  • 21
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • (Database issue)
    • Pruitt KD Tatusova T Maglott DR NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins Nucl Acids Res. 2005, 33((Database issue)):D501-504
    • (2005) Nucl Acids Res. , vol.33
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 22
    • 48149096726 scopus 로고    scopus 로고
    • MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays
    • rna.1070208
    • Xing Y Stoilov P Kapur K Han A Jiang H Shen S Black DL Wong WH MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays RNA 2008 rna.1070208.
    • (2008) RNA
    • Xing, Y.1    Stoilov, P.2    Kapur, K.3    Han, A.4    Jiang, H.5    Shen, S.6    Black, D.L.7    Wong, W.H.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.