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Volumn 9, Issue , 2008, Pages

A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions

Author keywords

[No Author keywords available]

Indexed keywords

BREAKPOINT DISTANCE; GENOME REARRANGEMENTS; GENOME SEQUENCING; PHYLOGENETIC RECONSTRUCTION; PHYLOGENETIC TREES; REALISTIC SCENARIO; REVERSAL DISTANCE; TRANSPOSITION DISTANCES;

EID: 60849083813     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-516     Document Type: Article
Times cited : (18)

References (28)
  • 1
    • 0037264074 scopus 로고    scopus 로고
    • Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes
    • 430962 12529304
    • Pevzner P Tesler G Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes Genome Research 2003, 13:37-45. 430962 12529304
    • (2003) Genome Research , vol.13 , pp. 37-45
    • Pevzner, P.1    Tesler, G.2
  • 2
    • 0034767147 scopus 로고    scopus 로고
    • A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study
    • 11694179
    • Bader D Moret B Yan M A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study Journal of Computational Biology 2001, 8:483-491. 11694179
    • (2001) Journal of Computational Biology , vol.8 , pp. 483-491
    • Bader, D.1    Moret, B.2    Yan, M.3
  • 4
    • 34447282827 scopus 로고    scopus 로고
    • Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions
    • 17683264
    • Bader M Ohlebusch E Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions Journal of Computational Biology 2007, 14(5):615-636. 17683264
    • (2007) Journal of Computational Biology , vol.14 , Issue.5 , pp. 615-636
    • Bader, M.1    Ohlebusch, E.2
  • 6
    • 15344342569 scopus 로고    scopus 로고
    • A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals
    • Hartman T Sharan R A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals Journal of Computer and System Sciences 2005, 70(3):300-320.
    • (2005) Journal of Computer and System Sciences , vol.70 , Issue.3 , pp. 300-320
    • Hartman, T.1    Sharan, R.2
  • 9
    • 0031721577 scopus 로고    scopus 로고
    • Multiple Genome Rearrangement and Breakpoint Phylogeny
    • 9773350
    • Sankoff D Blanchette M Multiple Genome Rearrangement and Breakpoint Phylogeny Journal of Computational Biology 1998, 5(3):555-570. 9773350
    • (1998) Journal of Computational Biology , vol.5 , Issue.3 , pp. 555-570
    • Sankoff, D.1    Blanchette, M.2
  • 13
    • 0036143403 scopus 로고    scopus 로고
    • Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
    • 155248 11779828
    • Bourque B Pevzner P Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species Genome Research 2002, 12:26-36. 155248 11779828
    • (2002) Genome Research , vol.12 , pp. 26-36
    • Bourque, B.1    Pevzner, P.2
  • 14
    • 0036371459 scopus 로고    scopus 로고
    • Multiple Genome Rearrangement by Reversals
    • 11928481
    • Wu S Gu X Multiple Genome Rearrangement by Reversals Pacific Symposium on Biocomputing World Scientific 2002, 259-270. 11928481
    • (2002) Pacific Symposium on Biocomputing , pp. 259-270
    • Wu, S.1    Gu, X.2
  • 16
    • 0042128756 scopus 로고    scopus 로고
    • Algorithms for Multiple Genome Rearrangement by Signed Reversals
    • 12603042
    • Wu S Gu X Algorithms for Multiple Genome Rearrangement by Signed Reversals Pacific Symposium on Biocomputing World Scientific 2003, 363-374. 12603042
    • (2003) Pacific Symposium on Biocomputing , pp. 363-374
    • Wu, S.1    Gu, X.2
  • 17
    • 33846673442 scopus 로고    scopus 로고
    • Using median sets for inferring phylogenetic trees
    • 17237080
    • Bernt M Merkle D Middendorf M Using median sets for inferring phylogenetic trees Bioinformatics 2007, 23:e129-e135. 17237080
    • (2007) Bioinformatics , vol.23
    • Bernt, M.1    Merkle, D.2    Middendorf, M.3
  • 19
    • 0029993075 scopus 로고    scopus 로고
    • Parametric genome rearrangement
    • 8654963
    • Blanchette M Kunisawa T Sankoff D Parametric genome rearrangement Gene 1996, 172:GC11-17. 8654963
    • (1996) Gene , vol.172
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 20
    • 0002856077 scopus 로고    scopus 로고
    • Transforming cabbage into turnip: Polynomial algorithm for sorting signed permutations by reversals
    • Hannenhalli S Pevzner P Transforming cabbage into turnip: Polynomial algorithm for sorting signed permutations by reversals Journal of the ACM 1999, 46:1-27.
    • (1999) Journal of the ACM , vol.46 , pp. 1-27
    • Hannenhalli, S.1    Pevzner, P.2
  • 23
    • 0032770572 scopus 로고    scopus 로고
    • Gene order breakpoint evidence in animal mitochondrial phylogeny
    • 10441671
    • Blanchette M Kunisawa T Sankoff D Gene order breakpoint evidence in animal mitochondrial phylogeny Journal of Molecular Evolution 1999, 49(2):193-203. 10441671
    • (1999) Journal of Molecular Evolution , vol.49 , Issue.2 , pp. 193-203
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 24
    • 33646782637 scopus 로고    scopus 로고
    • Alignments of mitochondrial genome arrangements: Applications to metazoan phylogeny
    • 16325206
    • Fritzsch G Schlegel M Stadler P Alignments of mitochondrial genome arrangements: Applications to metazoan phylogeny Journal of Theoretical Biology 2006, 240(4):511-520. 16325206
    • (2006) Journal of Theoretical Biology , vol.240 , Issue.4 , pp. 511-520
    • Fritzsch, G.1    Schlegel, M.2    Stadler, P.3
  • 25
    • 0030130366 scopus 로고    scopus 로고
    • Genome Rearrangements and Sorting by Reversals
    • Bafna V Pevzner P Genome Rearrangements and Sorting by Reversals SIAM Journal on Computing 1996, 25(2):272-289.
    • (1996) SIAM Journal on Computing , vol.25 , Issue.2 , pp. 272-289
    • Bafna, V.1    Pevzner, P.2
  • 26
    • 0037163953 scopus 로고    scopus 로고
    • (1 + )-approximation of Sorting by Reversals and Transpositions
    • Eriksen N (1 + )-approximation of Sorting by Reversals and Transpositions Theoretical Computer Science 2002, 289:517-529.
    • (2002) Theoretical Computer Science , vol.289 , pp. 517-529
    • Eriksen, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.