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Volumn 14, Issue 5, 2007, Pages 615-636

Sorting by weighted reversals, transpositions, and inverted transpositions

Author keywords

Approximation algorithm; Genome rearrangements; Weighted reversals and transpositions

Indexed keywords

CHROMOSOME ANALYSIS; CHROMOSOME INVERSION; CONFERENCE PAPER; GENE REARRANGEMENT; GENE SEQUENCE; INVERTED TRANSPOSITION; MATHEMATICAL ANALYSIS; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; REVERSAL REACTION;

EID: 34447282827     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2007.R006     Document Type: Conference Paper
Times cited : (33)

References (28)
  • 1
    • 0034767147 scopus 로고    scopus 로고
    • A linear-time algorithm for computing inversion distance between signed permutations with an experimental study
    • Bader, D.A., Moret, B.M.E., and Yan, M. 2001. A linear-time algorithm for computing inversion distance between signed permutations with an experimental study. J. Comput. Biol. 8, 483-491.
    • (2001) J. Comput. Biol , vol.8 , pp. 483-491
    • Bader, D.A.1    Moret, B.M.E.2    Yan, M.3
  • 2
    • 0030130366 scopus 로고    scopus 로고
    • Genome rearrangements and sorting by reversals
    • Bafna, V., and Pevzner, P.A. 1996. Genome rearrangements and sorting by reversals. SIAM J. Comput. 25, 272-289.
    • (1996) SIAM J. Comput , vol.25 , pp. 272-289
    • Bafna, V.1    Pevzner, P.A.2
  • 4
    • 1842434544 scopus 로고    scopus 로고
    • Improved bounds on sorting with length-weighted reversals
    • Bender, M.A., Ge, D., He, S., et al. 2004. Improved bounds on sorting with length-weighted reversals. ACM-SIAM Symp. Discrete Algorithms, 912-921.
    • (2004) ACM-SIAM Symp. Discrete Algorithms , pp. 912-921
    • Bender, M.A.1    Ge, D.2    He, S.3
  • 5
    • 11844251253 scopus 로고    scopus 로고
    • A very elementary presentation of the Hannenhalli-Pevzner theory
    • Bergeron, A. 2005. A very elementary presentation of the Hannenhalli-Pevzner theory. Discrete Appl. Math. 146, 134-145.
    • (2005) Discrete Appl. Math , vol.146 , pp. 134-145
    • Bergeron, A.1
  • 6
    • 35048854107 scopus 로고    scopus 로고
    • Reversal distance without hurdles and fortresses
    • Bergeron, A., Mixtacki, J., and Stoye, J. 2004. Reversal distance without hurdles and fortresses. Lect. Notes Comput. Sci. 3109, 388-399.
    • (2004) Lect. Notes Comput. Sci , vol.3109 , pp. 388-399
    • Bergeron, A.1    Mixtacki, J.2    Stoye, J.3
  • 8
    • 84938093121 scopus 로고    scopus 로고
    • 1.375-approximation algorithm for sorting by reversals
    • Berman, P., Hannenhalli, S., and Karpinski, M. 2002. 1.375-approximation algorithm for sorting by reversals. Lect. Notes Comput. Sci. 2461, 200-210.
    • (2002) Lect. Notes Comput. Sci , vol.2461 , pp. 200-210
    • Berman, P.1    Hannenhalli, S.2    Karpinski, M.3
  • 9
    • 0029993075 scopus 로고    scopus 로고
    • Parametric genome rearrangement
    • Blanchette, M., Kunisawa, T., and Sankoff, D. 1996. Parametric genome rearrangement. Gene 172, GC11-GC17.
    • (1996) Gene , vol.172
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 10
    • 0002721941 scopus 로고    scopus 로고
    • Sorting permutations by reversals and Eulerian cycle decompositions
    • Caprara, A. 1999. Sorting permutations by reversals and Eulerian cycle decompositions. SIAM J. Discrete Math. 12, 91-110.
    • (1999) SIAM J. Discrete Math , vol.12 , pp. 91-110
    • Caprara, A.1
  • 11
    • 0003886251 scopus 로고    scopus 로고
    • Ph.D. dissertation, University of Glasgow, Glasgow, UK
    • Christie, D.A. 1998. Genome rearrangement problems [Ph.D. dissertation]. University of Glasgow, Glasgow, UK.
    • (1998) Genome rearrangement problems
    • Christie, D.A.1
  • 12
    • 0344794387 scopus 로고    scopus 로고
    • Sorting signed permutations by reversals and insertions/deletions of contiguous segments
    • El-Mabrouk, N. 2001. Sorting signed permutations by reversals and insertions/deletions of contiguous segments. J. Discr. Algorithms 1, 105-122.
    • (2001) J. Discr. Algorithms , vol.1 , pp. 105-122
    • El-Mabrouk, N.1
  • 13
    • 0037749492 scopus 로고    scopus 로고
    • Reconstructing an ancestral genome using minimum segments duplications and reversals
    • El-Mabrouk, N. 2002. Reconstructing an ancestral genome using minimum segments duplications and reversals. J. Comput. Syst. Sci. 65, 442-464.
    • (2002) J. Comput. Syst. Sci , vol.65 , pp. 442-464
    • El-Mabrouk, N.1
  • 14
    • 30544441155 scopus 로고    scopus 로고
    • A 1.375-approximation algorithm for sorting by transpositions
    • Elias, I., and Hartman, T. 2005. A 1.375-approximation algorithm for sorting by transpositions. Lect. Notes Bioinform. 3692, 204-215.
    • (2005) Lect. Notes Bioinform , vol.3692 , pp. 204-215
    • Elias, I.1    Hartman, T.2
  • 15
    • 0037163953 scopus 로고    scopus 로고
    • 1 + ε)-approximation of sorting by reversals and transpositions
    • Eriksen, N. 2002. (1 + ε)-approximation of sorting by reversals and transpositions. Theor. Comput. Sci. 289, 517-529.
    • (2002) Theor. Comput. Sci , vol.289 , pp. 517-529
    • Eriksen, N.1
  • 16
    • 0000840830 scopus 로고    scopus 로고
    • A 2-approximation algorithms for genome rearrangements by reversals and transpositions
    • Gu, Q.-P, Peng, S., and Sudborough, H. 1999. A 2-approximation algorithms for genome rearrangements by reversals and transpositions. Theor. Comput. Sci. 210, 327-339.
    • (1999) Theor. Comput. Sci , vol.210 , pp. 327-339
    • Gu, Q.-P.1    Peng, S.2    Sudborough, H.3
  • 17
    • 0029493079 scopus 로고
    • Transforming men into mice (polynomial algorithm for genetic distance problem)
    • Hannenhalli, S., and Pevzner, P.A. 1995. Transforming men into mice (polynomial algorithm for genetic distance problem). Found. Comput. Sci., 581-592.
    • (1995) Found. Comput. Sci , pp. 581-592
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 18
    • 0002856077 scopus 로고    scopus 로고
    • Transforming cabbage into turnip: Polynomial algorithm for sorting signed permutations by reversals
    • Hannenhalli, S., and Pevzner, P.A. 1999. Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACM 46, 1-27.
    • (1999) J. ACM , vol.46 , pp. 1-27
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 19
    • 84855205127 scopus 로고    scopus 로고
    • A simpler and faster 1.5-approximation algorithm for sorting by transpositions
    • Hartman, T., and Shamir, R. 2006. A simpler and faster 1.5-approximation algorithm for sorting by transpositions. Inf. Comput. 204, 275-290.
    • (2006) Inf. Comput , vol.204 , pp. 275-290
    • Hartman, T.1    Shamir, R.2
  • 20
    • 15344342569 scopus 로고    scopus 로고
    • A 1.5-approximation algorithm for sorting by transpositions and transreversals
    • Hartman, T., and Sharan, R. 2005. A 1.5-approximation algorithm for sorting by transpositions and transreversals. J. Comput. Syst. Sci. 70, 300-320.
    • (2005) J. Comput. Syst. Sci , vol.70 , pp. 300-320
    • Hartman, T.1    Sharan, R.2
  • 21
    • 0034915202 scopus 로고    scopus 로고
    • Signed genome rearrangement by reversals and transpositions: Models and approximations
    • Lin, G.-H., and Xue, G. 2001. Signed genome rearrangement by reversals and transpositions: models and approximations. Theor. Comput. Sci. 259, 513-531.
    • (2001) Theor. Comput. Sci , vol.259 , pp. 513-531
    • Lin, G.-H.1    Xue, G.2
  • 23
    • 0642282572 scopus 로고    scopus 로고
    • Genomic sorting with length-weighted reversals
    • Pinter, R.Y., and Skiena, S. 2002. Genomic sorting with length-weighted reversals. Genome Inform. 13, 103-111.
    • (2002) Genome Inform , vol.13 , pp. 103-111
    • Pinter, R.Y.1    Skiena, S.2
  • 24
    • 0033391532 scopus 로고    scopus 로고
    • Genome rearrangement with gene families
    • Sankoff, D. 1999. Genome rearrangement with gene families. Bioinformatics 15, 909-917.
    • (1999) Bioinformatics , vol.15 , pp. 909-917
    • Sankoff, D.1
  • 26
    • 35048862957 scopus 로고    scopus 로고
    • Sorting by reversals in subquadratic time
    • Tannier, E., and Sagot, M.-F. 2004. Sorting by reversals in subquadratic time. Lect. Notes Comput. Sci. 3109, 1-13.
    • (2004) Lect. Notes Comput. Sci , vol.3109 , pp. 1-13
    • Tannier, E.1    Sagot, M.-F.2
  • 28
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • Yancopoulos, S., Attie, O., and Friedberg, R. 2005. Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinformatics 21, 3340-3346.
    • (2005) Bioinformatics , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.