메뉴 건너뛰기




Volumn 46, Issue 1, 1999, Pages 1-22

Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals

Author keywords

Algorithms; Computational biology; F.1.3 Computation by Abstract Devices : Modes of Computation; G.2.1 Discrete Mathematics : Combinatorics; Genetics; J.3 Life and Medical Sciences : biology and genetics; Performance

Indexed keywords


EID: 0002856077     PISSN: 00045411     EISSN: None     Source Type: Journal    
DOI: 10.1145/300515.300516     Document Type: Article
Times cited : (477)

References (29)
  • 1
    • 38249034650 scopus 로고
    • Sorting by insertion of leading element
    • AIGNER, M., AND WEST, D. B. 1987. Sorting by insertion of leading element. J. Combin. Theory 45, 306-309.
    • (1987) J. Combin. Theory , vol.45 , pp. 306-309
    • Aigner, M.1    West, D.B.2
  • 2
    • 0028899657 scopus 로고
    • Sorting by reversals: Genome rearrangements in plant organelles and evolutionary history of X chromosome
    • BAFNA, V., AND PEVZNER, P. 1995. Sorting by reversals: Genome rearrangements in plant organelles and evolutionary history of X chromosome. Mol. Biol. Biol. 12, 239-246.
    • (1995) Mol. Biol. Biol. , vol.12 , pp. 239-246
    • Bafna, V.1    Pevzner, P.2
  • 3
    • 0030130366 scopus 로고    scopus 로고
    • Genome rearrangements and sorting by reversals
    • BAFNA, V., AND PEVZNER, P. 1996. Genome rearrangements and sorting by reversals. SIAM J. Comput. 25, 272-289.
    • (1996) SIAM J. Comput. , vol.25 , pp. 272-289
    • Bafna, V.1    Pevzner, P.2
  • 4
    • 10244270170 scopus 로고    scopus 로고
    • Sorting by transpositions
    • BAFNA, V., AND PEVZNER, P. 1998. Sorting by transpositions. SIAM J. Disc. Math. 11, 224-240.
    • (1998) SIAM J. Disc. Math. , vol.11 , pp. 224-240
    • Bafna, V.1    Pevzner, P.2
  • 8
    • 0013326025 scopus 로고
    • The minimum-length generator sequence problem is NP-hard
    • EVEN, S., AND GOLDREICH, O. 1981. The minimum-length generator sequence problem is NP-hard. J. Algorithms 2, 311-313.
    • (1981) J. Algorithms , vol.2 , pp. 311-313
    • Even, S.1    Goldreich, O.2
  • 9
    • 0038643646 scopus 로고
    • Bounds for sorting by prefix reversals
    • GATES, W. H., AND PAPADIMITRIOU, C. H. 1979. Bounds for sorting by prefix reversals. Disc. Math. 27, 47-57.
    • (1979) Disc. Math. , vol.27 , pp. 47-57
    • Gates, W.H.1    Papadimitriou, C.H.2
  • 10
    • 84957880805 scopus 로고
    • Polynomial algorithm for computing translocation distance between genomes
    • Lecture Notes in Computer Science. Springer-Verlag, Berlin, Germany
    • HANNENHALLI, S. 1995. Polynomial algorithm for computing translocation distance between genomes. In Combinatorial Pattern Matching, Proceedings of the 6th Annual Symposium (CPM'95). Lecture Notes in Computer Science. Springer-Verlag, Berlin, Germany, pp. 162-176.
    • (1995) Combinatorial Pattern Matching, Proceedings of the 6th Annual Symposium (CPM'95) , pp. 162-176
    • Hannenhalli, S.1
  • 11
    • 0028806782 scopus 로고
    • Genome sequence comparison and scenarios for gene rearrangements: A test case
    • HANNENHALLI, S., CHAPPEY, C., KOONIN, E., AND PEVZNER, P. 1995. Genome sequence comparison and scenarios for gene rearrangements: A test case. Genomics, 30, 299-311.
    • (1995) Genomics , vol.30 , pp. 299-311
    • Hannenhalli, S.1    Chappey, C.2    Koonin, E.3    Pevzner, P.4
  • 12
    • 0029493079 scopus 로고
    • Transforming men into mice (polynomial algorithm for genomic distance problem)
    • IEEE Computer Society Press, Los Alamitos, Calif.
    • HANNENHALLI, S., AND PEVZNER, P. 1995. Transforming men into mice (polynomial algorithm for genomic distance problem). In Proceedings of the 36th Annual IEEE Symposium on Foundations of Computer Science. IEEE Computer Society Press, Los Alamitos, Calif., pp. 581-592.
    • (1995) Proceedings of the 36th Annual IEEE Symposium on Foundations of Computer Science , pp. 581-592
    • Hannenhalli, S.1    Pevzner, P.2
  • 13
    • 84941152013 scopus 로고    scopus 로고
    • To cut . . . or not to cut (applications of comparative physical maps in molecular evolution)
    • (Atlanta, Ga., Jan. 28-30). ACM, New York
    • HANNENHALLI, S., AND PEVZNER, P. 1996. To cut . . . or not to cut (applications of comparative physical maps in molecular evolution). In Proceedings of the 7th Annual ACM-SIAM Symposium on Discrete Algorithms (Atlanta, Ga., Jan. 28-30). ACM, New York, pp. 304-313.
    • (1996) Proceedings of the 7th Annual ACM-SIAM Symposium on Discrete Algorithms , pp. 304-313
    • Hannenhalli, S.1    Pevzner, P.2
  • 15
    • 0022050244 scopus 로고
    • The complexity of finding minimum-length generator sequences
    • JERRUM, M. 1985. The complexity of finding minimum-length generator sequences. Theoret. Comput. Sci. 36, 265-289.
    • (1985) Theoret. Comput. Sci. , vol.36 , pp. 265-289
    • Jerrum, M.1
  • 17
    • 84878713670 scopus 로고
    • Of mice and men: Algorithms for evolutionary distances between genomes with translocation
    • (San Francisco, Calif., Jan. 22-24). ACM, New York
    • KECECIOGLU, J., AND RAVI, R. 1995. Of mice and men: Algorithms for evolutionary distances between genomes with translocation. In Proceedings of the 6th Annual ACM-SIAM Symposium on Discrete Algorithms (San Francisco, Calif., Jan. 22-24). ACM, New York, pp. 604-613.
    • (1995) Proceedings of the 6th Annual ACM-SIAM Symposium on Discrete Algorithms , pp. 604-613
    • Kececioglu, J.1    Ravi, R.2
  • 18
    • 0029185212 scopus 로고
    • Exact and approximation algorithms for the inversion distance between two permutations
    • KECECIOGLU, J., AND SANKOFF, D. 1995. Exact and approximation algorithms for the inversion distance between two permutations. Algorithmica 13, 180-210.
    • (1995) Algorithmica , vol.13 , pp. 180-210
    • Kececioglu, J.1    Sankoff, D.2
  • 19
    • 84896575459 scopus 로고
    • Efficient bounds for oriented chromosome inversion distance
    • Lecture Notes in Computer Science, Springer-Verlag, Berlin, Germany
    • KECECIOGLU, J., AND SANKOFF, D. 1994. Efficient bounds for oriented chromosome inversion distance. In Combinatorial Pattern Matching, Proceedings of the 5th Annual Symposium (CPM'94). Lecture Notes in Computer Science, vol. 807. Springer-Verlag, Berlin, Germany, pp. 307-325.
    • (1994) Combinatorial Pattern Matching, Proceedings of the 5th Annual Symposium (CPM'94) , vol.807 , pp. 307-325
    • Kececioglu, J.1    Sankoff, D.2
  • 20
    • 0023992017 scopus 로고
    • Mitochondrial DNA rearrangements and transcriptional alterations in the male sterile cytoplasm of Ogura radish
    • MAKAROFF, C. A., AND PALMER, J. D. 1988. Mitochondrial DNA rearrangements and transcriptional alterations in the male sterile cytoplasm of Ogura radish. Mol. Cell. Biol. 8, 1474-1480.
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 1474-1480
    • Makaroff, C.A.1    Palmer, J.D.2
  • 21
    • 0000791476 scopus 로고
    • Lengths of chromosomal segments conserved since divergence of man and mouse
    • NADEAU, J. H., AND TAYLOR, B. A. 1984. Lengths of chromosomal segments conserved since divergence of man and mouse. Proc. Natl. Acad. Sci. USA 81, 814-818.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 814-818
    • Nadeau, J.H.1    Taylor, B.A.2
  • 22
    • 0024259002 scopus 로고
    • Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence
    • PALMER, J. D., AND HERBON, L. A. 1988. Plant mitochondrial DNA evolves rapidly in structure, but slowly in sequence. J. Mol. Evolut. 27, 87-97.
    • (1988) J. Mol. Evolut. , vol.27 , pp. 87-97
    • Palmer, J.D.1    Herbon, L.A.2
  • 24
    • 84957615807 scopus 로고
    • Edit distance for genome comparison based on non-local operations
    • Lecture Notes in Computer Science, Springer-Verlag, Berlin, Germany
    • SANKOFF, D. 1992. Edit distance for genome comparison based on non-local operations. In Combinatorial Pattern Matching, Proceedings of the 3rd Annual Symposium (CPM'92). Lecture Notes in Computer Science, vol. 644. Springer-Verlag, Berlin, Germany, pp. 121-135.
    • (1992) Combinatorial Pattern Matching, Proceedings of the 3rd Annual Symposium (CPM'92) , vol.644 , pp. 121-135
    • Sankoff, D.1
  • 27
    • 0000309645 scopus 로고
    • Inversions in the third chromosome of wild races of drosophila pseudoobscura, and their use in the study of the history of the species
    • STURTEVANT, A. H., AND DOBZHANSKY, T. 1936. Inversions in the third chromosome of wild races of drosophila pseudoobscura, and their use in the study of the history of the species. Proc. Nat. Acad. Sci. 22, 448-450.
    • (1936) Proc. Nat. Acad. Sci. , vol.22 , pp. 448-450
    • Sturtevant, A.H.1    Dobzhansky, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.