Centromere mapping in triploid families of the Pacific oyster Crassostrea gigas (Thunberg)

Aquaculture

Volumn 288, Issue 3-4, 2009, Pages 172-183

  Hubert, Sophie ^a   Cognard, Emmanuelle ^a   Hedgecock, Dennis ^a  

^a UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

Crassostrea gigas; Half tetrad analysis; Interference; Pacific oyster; Selection; Variance of recombination

Indexed keywords

BIVALVE; CHROMOSOME; KARYOLOGY; MAPPING METHOD; RECOMBINATION;

BIVALVIA; CRASSOSTREA GIGAS; MOLLUSCA; OSTREIDAE;

EID: 60749118002     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2008.12.006     Document Type: Article

References (63)

1. Allendorf F.W., and Leary R.F. Heterozygosity in gynogenetic diploids and triploids estimated by gene-centromere recombination rates. Aquaculture 43 (1984) 413-420
2. Allendorf F.W., Seeb J.E., Knudsen K.L., Thorgaard G.H., and Leary R.F. Gene-centromere mapping of 25 loci in rainbow trout. J. Heredity 77 (1986) 307-312
3. Beaumont A.R., and Fairbrother J.E. Gene-centromere recombination frequencies from gynogenetic and triploid Mytilus edulis. Aquaculture 137 (1995) 99
4. Bierne N., Launey S., Naciri-Graven Y., and Bonhomme F. Early effect of inbreeding as revealed by microsatellite analyses on Ostrea edulis larvae. Genetics 148 (1998) 1893-1906
5. Boudry P., Heurtebise S., and Lapegue S. Mitochondrial and nuclear DNA sequence variation of presumed Crassostrea gigas and Crassostrea angulata specimens: a new oyster species in Hong Kong?. Aquaculture 228 (2003) 15-25
6. Boutet I., Tanguy A., and Moraga D. Response of the Pacific oyster Crassostrea gigas to hydrocarbon contamination under experimental conditions. Gene 329 (2004) 147-157
7. Bucklin, K., 2002. Analysis of the causes of inbreeding in the Pacific oyster, Crassostrea gigas. Ph.D. dissertation, University of California, Davis.
8. Crow J.F. Genetic loads and the cost of natural selection. In: Kojima K.I. (Ed). Mathematical Topics in Population Genetics (1970), Springer-Verlag, New York
9. Cunningham C., Hikima J., Jenny M.J., Chapman R.W., Fang G.C., Saski C., Lundqvist M.L., Wing R.A., Cupit P.M., Gross P.S., Warr G.W., and Tomkins J.P. New resources for marine genomics: bacterial artificial chromosome libraries for the Eastern and Pacific oysters (Crassostrea virginica and C. gigas). Mar. Biotechnol. 8 (2006) 521-533
10. Curole J.P., and Hedgecock D. Estimation of preferential pairing rates in second-generation autotetraploid Pacific oysters (Crassostrea gigas). Genetics 171 (2005) 855-859
11. Danzmann R.G., and Gharbi K. Gene mapping in fishes: a means to an end. Genetica 111 (2001) 3-23
12. Downing S.L., and Allen S.K. Induced triploidy in the Pacific oyster, Crassostrea gigas: optimal treatments with cytochalasin B depend on temperature. Aquaculture 61 (1987) 1-15
13. Durand J.-P., Goudard F., Pieri J., Escoubas J.-M., Schreiber N., and Cadoret J.-P. Crassostrea gigas ferritin: cDNA sequence analysis for two heavy chain type subunits and protein purification. Gene 338 (2004) 187-195
14. Dyer K.A., Charlesworth B., and Jaenike J. Chromosome-wide linkage disequilibrium as a consequence of meiotic drive. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 1587-1592
15. Eudeline B., Allen S.K., and Guo X.M. Optimization of tetraploid induction in Pacific oysters, Crassostrea gigas, using first polar body as a natural indicator. Aquaculture 187 (2000) 73-84
16. FAO, 2006. World aquaculture production of fish, crustaceans, molluscs, etc., by principal species. In: http://www.fao.org/fi/statist/summtab/default.asp (Ed.).
17. Gharbi K., Gautier A., Danzmann R.G., Gharbi S., Sakamoto T., Hoyheim B., Taggart J.B., Cairney M., Powell R., Krieg F., Okamoto N., Ferguson M.M., Holm L.E., and Guyomard R. A linkage map for brown trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. Genetics 172 (2006) 2405-2419
18. Gueguen Y., Cadoret J.-P., Flament D., Barreau-Roumiguiere C., Girardot A.-L., Garnier J., Hoareau A., Bachere E., and Escoubas J.-M. Immune gene discovery by expressed sequence tags generated from hemocytes of the bacteria-challenged oyster, Crassostrea gigas. Gene 303 (2003) 139-145
19. Guo X. Oyster breeding and the use of technology. Bull. Aquacult. Assoc. Canada 104 (2004) 26-33
20. Guo X., and Allen Jr. S.K. Complete interference and nonrandom distribution of meiotic crossover in a mollusc, Mulinia lateralis (Say). Biol. Bull. 191 (1996) 145-148
21. Guo X., and Gaffney P.M. Artificial gynogenesis in the Pacific oyster, Crassostrea gigas: II. allozyme inheritance and early growth. J. Heredity 84 (1993) 311-315
22. Guo X.M., DeBrosse G.A., and Allen S.K. All-triploid Pacific oysters (Crassostrea gigas, Thunberg) produced by mating tetraploids and diploids. Aquaculture 142 (1996) 149-161
23. Guyomard R. High level of residual heterozygosity in gynogenetic rainbow trout, Salmo gairdneri, Richardson. Theor. Appl. Genet. 67 (1984) 307-316
24. Hedgecock D., Gaffney P.M., Goulletquer P., Guo X.M., Reece K., and Warr G.W. The case for sequencing the Pacific oyster genome. J. Shellfish Res. 24 (2005) 429-441
25. Hedgecock D., Lin J.Z., DeCola S., Haudenschild C.D., Meyer E., Manahan D.T., and Bowen B. Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas). Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 2313-2318
26. Hubert S., and Hedgecock D. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 168 (2004) 351-362
27. Huvet A., Boudry P., Ohresser M., Delsert C., and Bonhomme F. Variable microsatellites in the Pacific oyster Crassostrea gigas and other cupped oyster species. Anim. Genet. 31 (2000) 71-72
28. Huvet A., Herpin A., Degremont L., Labreuche Y., Samain J.F., and Cunningham C. The identification of genes from the oyster Crassostrea gigas that are differentially expressed in progeny exhibiting opposed susceptibility to summer mortality. Gene 343 (2004) 211-220
29. Jenny M.J., Ringwood A.H., Lacy E.R., Lewitus A.J., Kempton J.W., Gross P.S., Warr G.W., and Chapman R.W. Potential indicators of stress response identified by expressed sequence tag analysis of hemocytes and embryos from the American oyster, Crassostrea virginica. Mar. Biotechnol. 4 (2002) 81-93
30. Johnson K.R., Wright Jr. J.E., and May B. Linkage relationships reflecting ancestral tetraploidy in salmonid fish. Genetics 116 (1987) 579-591
31. Johnson S.L., Africa D., Horne S., and Postlethwait J.H. Half-tetrad analysis in zebrafish: mapping the ros mutation and the centromere of linkage group I. Genetics 139 (1995) 1727-1735
32. Johnson S.L., Gates M.A., Johnson M., Talbot W.S., Horne S., Baik K., Rude S., Wong J.R., and Postlethwait J.H. Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics 142 (1996) 1277-1288
33. Lahrech Z., Kishioka C., Morishima K., Mori T., Saito S., and Arai K. Genetic verification of induced gynogenesis and microsatellite-centromere mapping in the barfin flounder, Verasper moseri. Aquaculture 272 (2007) S115-S124
34. Langdon C., Evans F., Jacobson D., and Blouin M. Yields of cultured Pacific oysters Crassostrea gigas Thunberg improved after one generation of selection. Aquaculture 220 (2003) 227-244
35. Launey S., and Hedgecock D. High genetic load in the Pacific oyster Crassostrea gigas. Genetics 159 (2001) 255-265
36. Leitao A., Boudry P., Labat J.P., and Thiriot-Quievreux C. Comparative karyological study of cupped oyster species. Malacologia 41 (1999) 175-186
37. Leung P.S.C., and Chu K.H. cDNA cloning and molecular identification of the major oyster allergen from the Pacific oyster Crassostrea gigas. Clin. Exp. Allergy 31 (2001) 1287-1294
38. Li L., and Guo X.M. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Mar. Biotechnol. 6 (2004) 26-36
39. Li Q., and Kijima A. Microsatellite analysis of gynogenetic families in the Pacific oyster, Crassostrea gigas. J. Exp. Mar. Biol. Ecol. 331 (2006) 1-8
40. Li G., Hubert S., Bucklin K., Ribes V., and Hedgecock D. Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas. Mol. Ecol. Notes 3 (2003) 228-232
41. Lindner K.R., Seeb J.E., Habicht C., Knudsen K.L., Kretschmer E., Reedy D.J., Spruell P., and Allendorf F.W. Gene-centromere mapping of 312 loci in pink salmon by half-tetrad analysis. Genome 43 (2000) 538-549
42. Liu Q., Goudie C.A., Simco B.A., Davis K.B., and Morizot D.C. Gene-centromere mapping of six enzyme loci in gynogenetic channel catfish. J. Heredity 83 (1992) 245-248
43. Longwell A.C., Stilles S.S., and Smith D.G. Chromosome complement of the American oyster Crassostrea virginica, as seen in meiotic and cleaving eggs. Can. J. Genet. Cytol. 9 (1967) 845-856
44. Magoulas A., Gjetvaj B., Terzoglou V., and Zouros E. Three polymorphic microsatellites in the Japanese oyster, Crassostrea gigas (Thunberg). Anim. Genet. 29 (1998) 69-70
45. Martínez P., Hermida M., Pardo B.G., Fernández C., Castro J., Cal R.M., Álvarez-Dios J.A., Gómez-Tato A., and Bouza C. Centromere-linkage in the turbot (Scophthalmus maximus) through half-tetrad analysis in diploid meiogynogenetics. Aquaculture 280 (2008) 81-88
46. Mather K. Reductional and equational separation of the chromosomes in bivalents and multivalents. J. Genet. 30 (1935) 53-78
47. McGoldrick, D., 1997. An experimental investigation of the genetic basis of heterosis in the Pacific oyster Crassostrea gigas. Ph.D. dissertation, University of California, Davis.
48. McGoldrick D.J., and Hedgecock D. Fixation, segregation and linkage of allozyme loci in inbred families of the Pacific oyster Crassostrea gigas (Thunberg): implications for the causes of inbreeding depression. Genetics 146 (1997) 321-334
49. McGoldrick D.J., Hedgecock D., English L.J., Baoprasertkul P., and Ward R.D. The transmission of microsatellite alleles in Australian and North American stocks of the Pacific oyster (Crassostrea gigas): selection and null alleles. J. Shellfish Res. 19 (2000) 779-788
50. Mohideen M.A., Moore J.L., and Cheng K.C. Centromere-linked microsatellite markers for linkage groups 3, 4, 6, 7, 13, and 20 of zebrafish (Danio rerio). Genomics 67 (2000) 102-106
51. Nell J.A. Farming triploid oysters. Aquaculture 210 (2002) 69-88
52. Nomura K., Morishima K., Tanaka H., Unuma T., Okuzawa K., Ohta H., and Arai K. Microsatellite-centromere mapping in the Japanese eel (Anguilla japonica) by half-tetrad analysis using induced triploid families. Aquaculture 257 (2006) 53-67
53. Pie M.R., Ribeiro R.O., Boeger W.A., Ostrensky A., Falleiros R.M., and Angelo L. A simple PCR-RFLP method for the discrimination of native and introduced oyster species (Crassostrea brasiliana, C. rhizophorae and C. gigas; Bivalvia: Ostreidae) cultured in Southern Brazil. Aquacult. Res. 37 (2006) 1598-1600
54. Plough L., Curole J., Glassman S., and Hedgecock D. Temporal expression of genetic load in two families of the Pacific oyster Crassostrea gigas. J. Shellfish Res. 27 (2008) 1042
55. Sato T., Yokomizo S., Matsuda M., Hamaguchi S., and Sakaizumi M. Gene-centromere mapping of medaka sex chromosomes using triploid hybrids between Oryzias latipes and O. luzonensis. Genetica 111 (2001) 71-75
56. Seeb J.E., and Seeb L.W. Gene mapping of isozyme loci in chum salmon. J. Heredity 77 (1986) 399-402
57. Sellos D., Moal J., Degremont L., Huvet A., Daniel J.Y., Nicoulaud S., Boudry P., Samain J.F., and Van Wormhoudt A. Structure of amylase genes in populations of Pacific cupped oyster (Crassostrea gigas): tissue expression and allelic polymorphism. Mar. Biotechnol. 5 (2003) 360-372
58. Stanley J.G., Hidu H., and Allen S.K. Growth of American oysters increased by polyploidy induced by blocking meiosis I but not meiosis II. Aquaculture 37 (1984) 147-155
59. Thompson D., and Scott A.P. An analysis recombination data in gynogenetic diploid rainbow trout. Heredity 53 (1984) 441-452
60. Thorgaard G.H., Allendorf F.W., and Knudsen K.L. Gene-centromere mapping in rainbow trout: high interference over long map distances. Genetics 103 (1983) 771-783
61. Ubeda F., and Haig D. On the evolutionary stability of Mendelian segregation. Genetics 170 (2005) 1345-1357
62. Yamtich J., Voigt M.L., Li G., and Hedgecock D. Eight microsatellite loci for the Pacific oyster Crassostrea gigas. Anim. Genet. 36 (2005) 524-526
63. 2 values using pseudo-probability tests. J. Heredity 84 (1993) 152