메뉴 건너뛰기




Volumn 56, Issue 2, 2009, Pages 237-246

A study on relative abundance, composition and length variation of microsatellites in 18 underutilized crop species

Author keywords

Di and tri nucleotides repeats; Dicot and monocot species; Enriched library; Microsatellites; Underutilized crops

Indexed keywords

CROP; DICOTYLEDON; DNA; GENETIC ANALYSIS; GENETIC MARKER; MONOCOTYLEDON; RELATIVE ABUNDANCE;

EID: 60649091093     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-008-9359-1     Document Type: Article
Times cited : (16)

References (42)
  • 1
    • 0026451059 scopus 로고
    • Length polymorphism of simple sequence repeat DNA in soybean genetics
    • MS Akkaya AA Bhagwat PB Cregan 1992 Length polymorphism of simple sequence repeat DNA in soybean genetics Genetics 132 1131 1139
    • (1992) Genetics , vol.132 , pp. 1131-1139
    • Akkaya, M.S.1    Bhagwat, A.A.2    Cregan, P.B.3
  • 2
    • 0026518648 scopus 로고
    • Survey of human and rat microsatellites
    • JS Beckmann JL Weber 1992 Survey of human and rat microsatellites Genomics 12 627 631
    • (1992) Genomics , vol.12 , pp. 627-631
    • Beckmann, J.S.1    Weber, J.L.2
  • 3
    • 0025967537 scopus 로고
    • Abundance and DNA sequence of two-base repeat regions in tropical tree genomes
    • R Condit SP Hubbell 1991 Abundance and DNA sequence of two-base repeat regions in tropical tree genomes Genome 34 66 71
    • (1991) Genome , vol.34 , pp. 66-71
    • Condit, R.1    Hubbell, S.P.2
  • 5
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • H Ellegren 2004 Microsatellites: simple sequences with complex evolution Nat Genet 5 435 445
    • (2004) Nat Genet , vol.5 , pp. 435-445
    • Ellegren, H.1
  • 6
    • 0031838795 scopus 로고    scopus 로고
    • Characteristics of single- and multi-copy microsatellites from Pinus radiata
    • PJ Fisher TE Richardson RC Gardner 1998 Characteristics of single- and multi-copy microsatellites from Pinus radiata Theor Appl Genet 96 969 979
    • (1998) Theor Appl Genet , vol.96 , pp. 969-979
    • Fisher, P.J.1    Richardson, T.E.2    Gardner, R.C.3
  • 7
    • 0029053371 scopus 로고
    • Trinucleotide repeats that expand in human disease form hairpin structures in vitro
    • AM Gacy G Goellner N Juranic S Macura CT MacMurray 1995 Trinucleotide repeats that expand in human disease form hairpin structures in vitro Cell 81 533 540
    • (1995) Cell , vol.81 , pp. 533-540
    • Gacy, A.M.1    Goellner, G.2    Juranic, N.3    MacUra, S.4    MacMurray, C.T.5
  • 8
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
    • SA Goff D Ricke TH Lan 2002 A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) Science 296 92 100
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.H.3
  • 10
    • 0004902013 scopus 로고    scopus 로고
    • Promoting the conservation and use of underutilized and neglected crops
    • K Hammer J Heller 1998 Promoting the conservation and use of underutilized and neglected crops Schr Genet Ressour 8 223 227
    • (1998) Schr Genet Ressour , vol.8 , pp. 223-227
    • Hammer, K.1    Heller, J.2
  • 11
    • 0043015531 scopus 로고    scopus 로고
    • Microsatellites, from molecules to populations and back
    • P Jarne PJL Lagoda 1996 Microsatellites, from molecules to populations and back Trends Ecol Evol 11 424 429
    • (1996) Trends Ecol Evol , vol.11 , pp. 424-429
    • Jarne, P.1    Lagoda, P.J.L.2
  • 12
    • 20444491651 scopus 로고    scopus 로고
    • Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs
    • S Jung A Abbott C Jesudurai J Tomkins D Main 2005 Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs Funct Integr Genomics 5 136 143
    • (2005) Funct Integr Genomics , vol.5 , pp. 136-143
    • Jung, S.1    Abbott, A.2    Jesudurai, C.3    Tomkins, J.4    Main, D.5
  • 13
    • 0028952245 scopus 로고
    • Simple repetitive DNA sequences from primates: Compilation and analysis
    • J Jurka C Pethiyagoda 1995 Simple repetitive DNA sequences from primates: compilation and analysis J Biol Chem 40 120 126
    • (1995) J Biol Chem , vol.40 , pp. 120-126
    • Jurka, J.1    Pethiyagoda, C.2
  • 14
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • RV Kantety ML Rota DE Matthews ME Sorrells 2002 Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat Plant Mol Biol 48 501 510
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    Rota, M.L.2    Matthews, D.E.3    Sorrells, M.E.4
  • 15
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • MV Katti PK Ranjekar VS Gupta 2001 Differential distribution of simple sequence repeats in eukaryotic genome sequences Mol Biol Evol 18 1161 1167
    • (2001) Mol Biol Evol , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 16
    • 0028026319 scopus 로고
    • Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles
    • JMH Kijas JCS Fowler CA Garbett MR Thomas 1994 Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles Biotechniques 16 656 662
    • (1994) Biotechniques , vol.16 , pp. 656-662
    • Kijas, J.M.H.1    Fowler, J.C.S.2    Garbett, C.A.3    Thomas, M.R.4
  • 18
    • 33645754932 scopus 로고    scopus 로고
    • Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species
    • SP Kumpatla S Mukhopadhyay 2005 Mining and survey of simple sequence repeats in expressed sequence tags of dicotyledonous species Genome 48 985 998
    • (2005) Genome , vol.48 , pp. 985-998
    • Kumpatla, S.P.1    Mukhopadhyay, S.2
  • 19
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • U Lagercrantz H Ellegren L Andersson 1993 The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates Nucleic Acids Res 21 1111 1115
    • (1993) Nucleic Acids Res , vol.21 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Andersson, L.3
  • 20
    • 0031239614 scopus 로고    scopus 로고
    • Microsatellite marker development, mapping and applications in rice genetics and breeding
    • SR McCouch X Chen O Panaud S Temnykh Y Xu YG Cho 1997 Microsatellite marker development, mapping and applications in rice genetics and breeding Plant Mol Biol 35 89 99
    • (1997) Plant Mol Biol , vol.35 , pp. 89-99
    • McCouch, S.R.1    Chen, X.2    Panaud, O.3    Temnykh, S.4    Xu, Y.5    Cho, Y.G.6
  • 21
    • 0033951367 scopus 로고    scopus 로고
    • Selection against frameshift mutations limits microsatellite expansion in coding DNA
    • D Metzgar J Bytof C Wills 2002 Selection against frameshift mutations limits microsatellite expansion in coding DNA Genome Res 10 72 80
    • (2002) Genome Res , vol.10 , pp. 72-80
    • Metzgar, D.1    Bytof, J.2    Wills, C.3
  • 22
    • 0030737538 scopus 로고    scopus 로고
    • Trinucleotide repeats associated with human disease
    • M Mitas 1997 Trinucleotide repeats associated with human disease Nucleic Acids Res 25 2245 2254
    • (1997) Nucleic Acids Res , vol.25 , pp. 2245-2254
    • Mitas, M.1
  • 23
    • 0010676735 scopus 로고    scopus 로고
    • Genome mapping, molecular markers and marker-assisted selection in crop plants
    • M Mohan S Nair TG Krishna M Yano I Rhodes 1997 Genome mapping, molecular markers and marker-assisted selection in crop plants Mol Breed 3 87 103
    • (1997) Mol Breed , vol.3 , pp. 87-103
    • Mohan, M.1    Nair, S.2    Krishna, T.G.3    Yano, M.4    Rhodes, I.5
  • 24
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • M Morgante AM Olivieri 1993 PCR-amplified microsatellites as markers in plant genetics Plant J 3 175 182
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 25
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with non-repetitive DNA in plant genomes
    • M Morgante M Hanafey W Powell 2002 Microsatellites are preferentially associated with non-repetitive DNA in plant genomes Nat Genet 30 194 200
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 26
    • 33646200505 scopus 로고    scopus 로고
    • Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps
    • KH Mun DJ Kim HK Choi 2006 Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps Genetics 172 2541 2555
    • (2006) Genetics , vol.172 , pp. 2541-2555
    • Mun, K.H.1    Kim, D.J.2    Choi, H.K.3
  • 27
    • 8444227899 scopus 로고    scopus 로고
    • The role of genomics research in improvement of "orphan" crops
    • RJ Nelson RL Naylor MM Jahn 2004 The role of genomics research in improvement of "Orphan" crops Crop Sci 44 1901 1904
    • (2004) Crop Sci , vol.44 , pp. 1901-1904
    • Nelson, R.J.1    Naylor, R.L.2    Jahn, M.M.3
  • 29
    • 0035027367 scopus 로고    scopus 로고
    • Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species
    • J Plieske D Struss 2001 Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species Theor Appl Genet 102 689 694
    • (2001) Theor Appl Genet , vol.102 , pp. 689-694
    • Plieske, J.1    Struss, D.2
  • 30
  • 31
    • 25444467752 scopus 로고    scopus 로고
    • Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley
    • ML Rota RV Kantety JK Yu ME Sorrells 2005 Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley BMC Genomics 6 23
    • (2005) BMC Genomics , vol.6 , pp. 23
    • Rota, M.L.1    Kantety, R.V.2    Yu, J.K.3    Sorrells, M.E.4
  • 33
    • 33746718089 scopus 로고    scopus 로고
    • Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-characteristics of microsatellites
    • Mv Stackelberg SA Rensing R Reski 2006 Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-characteristics of microsatellites BMC Plant Biol 6 9
    • (2006) BMC Plant Biol , vol.6 , pp. 9
    • Mv, S.1    Rensing, S.A.2    Reski, R.3
  • 35
    • 0036954883 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellites in Brassica rapa L
    • K Suwabe H Iketani T Nunome T Kage M Hirai 2002 Isolation and characterization of microsatellites in Brassica rapa L Theor Appl Genet 104 1092 1098
    • (2002) Theor Appl Genet , vol.104 , pp. 1092-1098
    • Suwabe, K.1    Iketani, H.2    Nunome, T.3    Kage, T.4    Hirai, M.5
  • 36
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • S Temnych G DeClerc A Lukashova L Lipovich S Cartinhour S McCouch 2001 Computational and experimental and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential Genome Res 11 1441 1452
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnych, S.1    Declerc, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 37
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Survey and analysis
    • G Toth Z Gaspari J Jurka 2000 Microsatellites in different eukaryotic genomes: survey and analysis Genome Res 10 967 981
    • (2000) Genome Res , vol.10 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 38
    • 0032167572 scopus 로고    scopus 로고
    • NGG-triplet repeats form similar intrastrand structures: Implications for the triplet expansion diseases
    • K Usdin 1998 NGG-triplet repeats form similar intrastrand structures: implications for the triplet expansion diseases Nucleic Acids Res 26 4078 4085
    • (1998) Nucleic Acids Res , vol.26 , pp. 4078-4085
    • Usdin, K.1
  • 39
    • 0032824302 scopus 로고    scopus 로고
    • Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.)
    • MI Uzunova W Ecke 1999 Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.) Plant Breed 118 323 326
    • (1999) Plant Breed , vol.118 , pp. 323-326
    • Uzunova, M.I.1    Ecke, W.2
  • 40
    • 0036428541 scopus 로고    scopus 로고
    • In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species
    • RK Varshney T Thiel N Stein P Langridge A Graner 2002 In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species Cell Mol Biol Lett 7 537 546
    • (2002) Cell Mol Biol Lett , vol.7 , pp. 537-546
    • Varshney, R.K.1    Thiel, T.2    Stein, N.3    Langridge, P.4    Graner, A.5
  • 41
    • 0030808252 scopus 로고    scopus 로고
    • Microsatellite instability in yeast: Dependence on the length of the microsatellite
    • M Wierdl M Dominska TD Petes 1997 Microsatellite instability in yeast: dependence on the length of the microsatellite Genetics 146 769 779
    • (1997) Genetics , vol.146 , pp. 769-779
    • Wierdl, M.1    Dominska, M.2    Petes, T.D.3
  • 42
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: A review
    • L Zane L Bargelloni T Patarnello 2002 Strategies for microsatellite isolation: a review Mol Ecol 11 1 16
    • (2002) Mol Ecol , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.