메뉴 건너뛰기




Volumn 25, Issue 4, 2009, Pages 537-538

PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BAYES THEOREM; COMPUTER INTERFACE; COMPUTER PROGRAM; COMPUTER SIMULATION; DNA SEQUENCE; GENETIC VARIABILITY; MOLECULAR EVOLUTION; MOLECULAR MODEL; PHYLOGENY; PREDICTION; PRIORITY JOURNAL;

EID: 60149104693     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn651     Document Type: Article
Times cited : (25)

References (19)
  • 1
    • 0035986890 scopus 로고    scopus 로고
    • Bayesian model adequacy and choice in phylogenetics
    • Bollback,J.P. (2002) Bayesian model adequacy and choice in phylogenetics. Mol. Biol. Evol., 19, 1171-1180.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 1171-1180
    • Bollback, J.P.1
  • 4
    • 0027526039 scopus 로고
    • Statistical tests of models of DNA substitution
    • Goldman,N. (1993) Statistical tests of models of DNA substitution. J. Mol. Evol., 36, 182-198.
    • (1993) J. Mol. Evol , vol.36 , pp. 182-198
    • Goldman, N.1
  • 5
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck,J.P. and Ronquist,F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 6
    • 34547465760 scopus 로고    scopus 로고
    • Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1
    • Hugall,A.F. et al. (2007) Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1. Syst. Biol., 56, 543-563.
    • (2007) Syst. Biol , vol.56 , pp. 543-563
    • Hugall, A.F.1
  • 7
    • 2442581218 scopus 로고    scopus 로고
    • The importance of proper model assumption in Bayesian phylogenetics
    • Lemmon,A.R. and Moriarty,E.C. (2004) The importance of proper model assumption in Bayesian phylogenetics. Syst. Biol., 53, 265-277.
    • (2004) Syst. Biol , vol.53 , pp. 265-277
    • Lemmon, A.R.1    Moriarty, E.C.2
  • 8
    • 47249090871 scopus 로고    scopus 로고
    • Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci
    • Li,C. et al. (2008) Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Syst. Biol., 57, 519-539.
    • (2008) Syst. Biol , vol.57 , pp. 519-539
    • Li, C.1
  • 9
    • 0242487488 scopus 로고    scopus 로고
    • Performance-based selection of likelihood models for phylogeny estimation
    • Minin,V. et al. (2003) Performance-based selection of likelihood models for phylogeny estimation. Syst. Biol., 52, 674-683.
    • (2003) Syst. Biol , vol.52 , pp. 674-683
    • Minin, V.1
  • 10
    • 1642341403 scopus 로고    scopus 로고
    • Bayesian phylogenetic analysis of combined data
    • Nylander,J.A.A. et al. (2004) Bayesian phylogenetic analysis of combined data. Syst. Biol., 53, 47-67.
    • (2004) Syst. Biol , vol.53 , pp. 47-67
    • Nylander, J.A.A.1
  • 11
    • 4243140058 scopus 로고    scopus 로고
    • A phylogenetic mixture model for detecting patternheterogeneity in gene sequence or character-state data
    • Pagel,M. and Meade,A. (2004) A phylogenetic mixture model for detecting patternheterogeneity in gene sequence or character-state data. Syst. Biol., 53, 571-581.
    • (2004) Syst. Biol , vol.53 , pp. 571-581
    • Pagel, M.1    Meade, A.2
  • 12
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada,D. and Buckley,T.R. (2004) Model selection and model averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol., 53, 793-808.
    • (2004) Syst. Biol , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 13
    • 54449089026 scopus 로고    scopus 로고
    • Newly discovered sister lineage sheds light on early ant evolution
    • Rabeling,C. et al. (2008) Newly discovered sister lineage sheds light on early ant evolution. Proc. Natl Acad. Sci. USA, 105 14913-14917.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 14913-14917
    • Rabeling, C.1
  • 14
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut,A. and Grassly,N.C. (1997) Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci., 13, 235-238.
    • (1997) Comput. Appl. Biosci , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 15
    • 0000439370 scopus 로고
    • Bayesianly justifiable and relevant frequency calculations for the applied statistician
    • Rubin,D.B. (1984) Bayesianly justifiable and relevant frequency calculations for the applied statistician. Ann. Stat., 12, 1151-1172.
    • (1984) Ann. Stat , vol.12 , pp. 1151-1172
    • Rubin, D.B.1
  • 17
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis,D.M. et al, eds, 2nd edn. Sinauer Associates, Sunderland, MA, USA, pp
    • Swofford,D.L. et al. (1996) Phylogenetic inference. In Hillis,D.M. et al. (eds) Molecular Systematics. 2nd edn. Sinauer Associates, Sunderland, MA, USA, pp. 407-514.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1
  • 18
    • 0035527406 scopus 로고    scopus 로고
    • Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods
    • Swofford,D.L. et al. (2001) Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. Syst. Biol., 50, 525-539.
    • (2001) Syst. Biol , vol.50 , pp. 525-539
    • Swofford, D.L.1
  • 19
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation
    • Yang,Z. et al. (1994) Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Mol. Biol. Evol., 11, 316-324.
    • (1994) Mol. Biol. Evol , vol.11 , pp. 316-324
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.