Genetic variability of human immunodeficiency virus-1 in Bahia State, Northeast, Brazil: High diversity of HIV genotypes

Journal of Medical Virology

Volumn 81, Issue 3, 2009, Pages 391-399

  Monteiro, Joana Paixão ^a   Alcantara Jr , Luiz Carlos ^a,b   De Oliveira, Tulio ^c   Oliveira, Antonio Marcos ^a   Melo, Marco Antônio Gomes ^a,b   Brites, Carlos ^d   Galvão Castro, Bernardo ^a,b  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b ESCOLA BAHIANA DE MEDICINA E SAÚDE PÚBLICA   (Brazil)

^c PO Box 12995 Mowbray 7705   (South Africa)

^d FEDERAL UNIVERSITY OF BAHIA   (Brazil)

Author keywords

Bahia; Brazil; Epidemiology; HIV 1; Phylogeny

Indexed keywords

GAG PROTEIN; VIRUS ENVELOPE PROTEIN; VIRUS DNA;

ADULT; ARTICLE; BRAZIL; CONTROLLED STUDY; FEMALE; GENETIC VARIABILITY; GENOTYPE; HETERODUPLEX ANALYSIS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; HUMAN IMMUNODEFICIENCY VIRUS PREVALENCE; MAJOR CLINICAL STUDY; MALE; NONHUMAN; PHYLOGENY; VIRUS TRANSMISSION; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; SEQUENCE HOMOLOGY; VIROLOGY;

HUMAN IMMUNODEFICIENCY VIRUS 1;

ADULT; BRAZIL; CLUSTER ANALYSIS; DNA, VIRAL; ENV GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; FEMALE; GAG GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; GENETIC VARIATION; GENOTYPE; HETERODUPLEX ANALYSIS; HIV INFECTIONS; HIV-1; HUMANS; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 60049085775     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21414     Document Type: Article

References (36)

1. Barreto CC, Nishyia A, Araujo LV, Ferreira JE, Busch MP, Sabino EC. 2006. Trends in antiretroviral drug resistance and clade distributions among HIV-1-infected blood donors in Sao Paulo, Brazil. J Acquir Immune Defic Syndr 41:338-341.
2. Boletim Epidemiológico AIDS. Ano XVI n8 01. Available at http:// www.aids.gov.br. Access on July 2007.
3. Buonaguro L, Tagliamonte M, Tornesello ML, Buonaguro FM. 2005. Evaluation of a modified version of heteroduplex mobility assay for rapid screening of HIV-1 isolates in epidemics characterized by mono/dual clade predominance. J Virol Methods 124:123-134.
4. Burke DS, McCutchan FE. 1996. Global distribution of human immunodeficiency virus type 1 clades. In: DeVita VT, Hellman L, Jr., Rosenberg SA, AIDS: Biology, diagnostics, treatment and prevention. 4th edition. New York: Lippencott-Raven Publishers, pp. 119-126.
5. Cabral VP, Cunha CB, Magalhaes EF, Pinto-Neto LF, Couto-Fernandez JC, Dietze R, Morgado MG, Ribeiro-Rodrigues R. 2006. Human immunodeficiency virus type-1 subtypes of infected patients in Espirito Santo, Brazil. Mem Inst Oswaldo Cruz 101: 881-885.
6. Carr JK, Avila M, Gomez Carrillo M, Salomon H, Hierholzer J, Watanaveeradej V, Pando MA, Negrete M, Russell KL, Sanchez J, Birx DL, Andrade R, Vinoles J, McCutchan FE. 2001. Diverse BF recombinants have spread widely since the introduction of HIV-1 into South America. AIDS 15:F41-F47.
7. Casado G, Thomson MM, Sierra M, Najera R. 2005. Identification of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19-cpx) in Cuba. J Acquir Immune Defic Syndr 40:532-537.
8. Couto-Fernandez JC, Morgado MG, Bongertz V, Tanuri A, Andrade T, Brites C, Galvao-Castro B. 1999. HIV-1 subtyping in Salvador, Bahia, Brazil: A city with African sociodemographic characteristics. J Acquir Immune Defic Syndr 22:288-293.
9. Couto-Fernandez JC, Silva-de-Jesus C, Veloso VG, Rachid M, Gracie RS, Chequer-Fernandez SL, Oliveira SM, Arakaki-Sanchez D, Chequer PJ, Morgado MG. 2005. Human immunodeficiency virus type 1 (HIV-1) genotyping in Rio;1; de Janeiro, Brazil: Assessing subtype and drug-resistance associated mutations in HIV-1 infected individuals failing highly active antiretroviral therapy. Mem Inst Oswaldo Cruz 100:73-78.
10. Couto-Fernandez JC, Eyer-Silva WA, Guimarães ML, Chequer-Fernandez SL, Grinsztejn B, Delaporte E, Peeters M, Morgado MG. 2006. Phylogenetic analysis of Brazilian HIV type 1 subtype D strains: Tracing the origin of this subtype in Brazil. AIDS Res Hum Retroviruses 22:207-211.
11. De Sa Filho DJ, Sanabani S, Diaz RS, Munerato P, Brunstein A, Fusuma E, Sabino EC, Janini LM. 2005. Analysis of full-length human immunodeficiency virus type 1 genome reveals a variable spectrum of subtypes B and f recombinants in Sao Paulo, Brazil. AIDS Res Hum Retroviruses 21:145-151.
12. De Sa Filho DJ, Sucupira MC, Casiero MM, Sabino EC, Diaz RS, Janini LM. 2006. Identification of two HIV type 1 circulating recombinant forms in Brazil. AIDS Res Hum Retroviruses 22:1-13.
13. Delwart EL, Shpaer EG, Louwagie J, McCutchan FE, Grez M, Rubsamen-Waigmann H, Mullins JI. 1993. Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes. Science 262:1257-1261.
14. Dourado I, Milroy CA, Mello MA, Ferraro GA, Castro-Lima Filho H, Guimarães ML, Morgado MG, Teixeira MG, Barreto ML, Galvã o-Castro B. 2007. HIV-1 seroprevalence in the general population of Salvador, Bahia State, Northeast Brazil. Cad Saude Publica 23: 25-32.
15. Eyer-Silva WA, Couto-Fernandez JC, Morgado MG. 2007. Molecular epidemiology of HIV type 1 in inner Rio De Janeiro State, Brazil. AIDS Res Hum Retroviruses 23:303-308.
16. Guimarães ML, dos Santos Moreira A, Loureiro R, Galvão-Castro B, Morgado MG. Brazilian Network for HIV Isolation and Characterization. 2002.High frequency of recombinant genomes in HIV type 1 samples from Brazilian southeastern and southern regions. AIDS Res Hum Retroviruses 18:1261-1269.
17. Heyndrickx L, Janssens W, Zekeng L, Musonda R, Anagonou S, Van der Auwera G, Coppens S, Vereecken K, De Witte K, Van Rampelbergh R, Kahindo M, Morison L, McCutchan FE, Carr JK, Albert J, Essex M, Goudsmit J, Asjö B, Salminen M, Buvé A, van DerGroen G. 2000. Simplified strategy for detection of recombinant HIV-1 group M isolates by gag/env heteroduplex mobility assay. J Virol 74:363-370.
18. Kunanusont C, Foy HM, Kreiss JK, Rerks-Ngarm S, Phanuphak P, Raktham S, Pau CP, Young NL. 1995. HIV-1 subtypes and male-to-female transmission in Thailand. Lancet 345:1078-1083.
19. Mccutchan FE, Viputtigul K, De Souza MS, Carr JK, Markowitz LE, Buapunth P, McNeil JG, Robb ML, Nitayaphan S, Birx DL, Brown AE. 2000. Diversity of envelope glycoprotein from human immunodeficiency virus type 1 of recent seroconverters in Thailand. AIDS Res Hum Retroviruses 16:801-805.
20. Monteiro JP, Ferraro GA, Oliveira T, Goldani LZ, Kashima S, Alcantara LC, Morgado MG, Bou-Habib DC, Galvão-Castro B. 2007. Genetic and biologic characterization of HIV type 1 subtype C isolates from south Brazil. AIDS Res Hum Retroviruses 23:135-143.
21. Morgado MG, Guimaraes ML, Galvao-Castro B. 2002. HIV-1 polymorphism: A challenge for vaccine development - A review. Mem Inst Oswaldo Cruz 97:143-150.
22. Nicholas KB, Nicholas HB, Jr., Deerfield DW, II. 1997. GeneDoc: Analysis and visualization of genetic variation. EMBNET News 4:1-4.
23. Page RD. 1996. TreeView: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
24. Pedroso C, Queiroz AT, Alcântara LC, Drexler JF, Diaz RS, Weyll N, Brites C. 2007. High prevalence of primary antiretroviral resistance among HIV-1-infected adults and children in Bahia, a northeast state of Brazil. J Acquir Immune Defic Syndr 45:251-253.
25. Pereira GA, Stefani MM, Araujo Filho JA, Souza LC, Stefani GP, Martelli CM. 2004. Human immunodeficiency virus type 1 (HIV-1) and Mycobacterium leprae co-infection: HIV-1 subtypes and clinical, immunologic, and histopathologic profiles in a Brazilian cohort. Am J Trop Med Hyg 71:679-684.
26. Posada D, Krandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics 14:817-818.
27. Quarleri JF, Rubio A, Carobene M, Turk G, Vignoles M, Harrigan RP, Montaner JS, Salomón H, Gómez-Carrillo M. 2004. HIV type 1 BF recombinant strains exhibit different pol gene mosaic patterns: Descriptive analysis from 284 patients under treatment failure. AIDS Res Hum Retroviruses 20:1100-1107.
28. Rios M, Fernandez J, Jaramillo P, Paredes V, Sanchez JL, Laguna-Torres VA, Carr JK, Ramirez E. 2005. Molecular epidemiology of HIV type 1 in Chile: Differential geographic and transmission route distribution of B and F subtypes. AIDS Res Hum Retroviruses 21:835-840.
29. Salminen MO, Carr JK, Burke DS, McCutchan FE. 1995. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 11:1423-1425.
30. Sanabani S, Kleine Neto W, Kalmar EM, Diaz RS, Janini LM, Sabino EC. 2006. Analysis of the near full length genomes of HIV-1 subtypes B, F, and BF recombinant from a cohort of 14 patients in Sao Paulo, Brazil. Infect Genet Evol 6:368-377.
31. Swofford D. 1999. PAUP 4.0: 1999. Phylogenetic analysis using parsimony (and other methods), 4.0b2a. Sunderland, MA: Sinauer Associates, Inc.
32. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEG A4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599.
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins D. 1997. The CLUSTAL-X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882.
34. Thomson MM, Delgado E, Herrero I, Villahermosa ML, Vázquez-de Parga E, Cuevas MT, Carmona R, Medrano L, Pérez-Alvarez L, Cuevas L, Nájera R. 2002. Diversity of mosaic structures and common ancestry of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Argentina revealed by analysis of near full-length genome sequences. J Gen Virol 83:107-119.
35. Thomson MM, Casado G, Posada D, Sierra M, Najera R. 2005. Identification of a novel HIV-1 complex circulating recombinant form (CRF18-cpx) of Central African origin in Cuba. AIDS 19:1155-1163.
36. Weniger BG, Takebe Y, Ou CY, Yamazaki S. 1994. The molecular epidemiology of HIV in Asia. [Retraction of Weniger BG, Takebe Y, Ou CY, Yamazaki S. In: AIDS 2001 Mar 9;15(4):545]. AIDS 8:S13-S28.