-
1
-
-
0026911267
-
Split decomposition: A new and useful approach to phylogenetic analysis of distance data
-
Bandelt, H.J., and Dress, A.W. 1992. Split decomposition: a new and useful approach to phylogenetic analysis of distance data. Mol. Phylogenet. Evol. 1: 242-252.
-
(1992)
Mol. Phylogenet. Evol
, vol.1
, pp. 242-252
-
-
Bandelt, H.J.1
Dress, A.W.2
-
2
-
-
0026750941
-
Diversity among rhizobia effective with Robinia pseudoacacia L
-
Batzli, J.M., Graves, W.R., and van Berkum, P. 1992. Diversity among rhizobia effective with Robinia pseudoacacia L. Appl. Environ. Microbiol. 58: 2137-2143.
-
(1992)
Appl. Environ. Microbiol
, vol.58
, pp. 2137-2143
-
-
Batzli, J.M.1
Graves, W.R.2
van Berkum, P.3
-
3
-
-
0030816742
-
Can three incongruence test predict when data should be combined?
-
Cunningham, C.W. 1997. Can three incongruence test predict when data should be combined? Mol. Biol. Evol. 14: 733-740.
-
(1997)
Mol. Biol. Evol
, vol.14
, pp. 733-740
-
-
Cunningham, C.W.1
-
4
-
-
0024910645
-
Occurrence of nodulation in the Leguminosae
-
de Faria, S.M, Lewis, G.P., Sprent, J.I., and Sutherland, J.M. 1989. Occurrence of nodulation in the Leguminosae. New Phytol. 111: 607-619.
-
(1989)
New Phytol
, vol.111
, pp. 607-619
-
-
de Faria, S.M.1
Lewis, G.P.2
Sprent, J.I.3
Sutherland, J.M.4
-
5
-
-
0033831427
-
Genotypic characterization of Bradyrhizobium strains nodulating small Senegalese legumes by 16S-23S rRNA intergenic spacers and amplified fragment length polymorphism fingerprint analyses
-
Doignon-Bourcier, F., Willems, A., Coopman, R., Laguerre, G., Gillis, M., and de Lajudie, P. 2000. Genotypic characterization of Bradyrhizobium strains nodulating small Senegalese legumes by 16S-23S rRNA intergenic spacers and amplified fragment length polymorphism fingerprint analyses. Appl. Environ. Microbiol. 66: 3987-3997.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 3987-3997
-
-
Doignon-Bourcier, F.1
Willems, A.2
Coopman, R.3
Laguerre, G.4
Gillis, M.5
de Lajudie, P.6
-
6
-
-
0030750026
-
A phytogeny of the chloroplast gene rbcL in the Leguminosae: Taxonomic correlations and insights into the evolution of nodulation
-
Doyle, J.J., Doyle, J.L., Ballenber, J.A., Dickson, E.E., Kajita, T., and Ohashi, H. 1997. A phytogeny of the chloroplast gene rbcL in the Leguminosae: taxonomic correlations and insights into the evolution of nodulation. Am. J. Bot. 84: 541-554.
-
(1997)
Am. J. Bot
, vol.84
, pp. 541-554
-
-
Doyle, J.J.1
Doyle, J.L.2
Ballenber, J.A.3
Dickson, E.E.4
Kajita, T.5
Ohashi, H.6
-
7
-
-
0029840849
-
Classification of bacteria nodulating Lathyrus japonicus and Lathyrus pratensis in Northern Quebec as strains of Rhizobium leguminosasrum. biovar viciae
-
Drouin, P., Prevost, D., and Antoun, H. 1996. Classification of bacteria nodulating Lathyrus japonicus and Lathyrus pratensis in Northern Quebec as strains of Rhizobium leguminosasrum. biovar viciae. Int. J. Syst. Bacteriol. 46: 1016-1024.
-
(1996)
Int. J. Syst. Bacteriol
, vol.46
, pp. 1016-1024
-
-
Drouin, P.1
Prevost, D.2
Antoun, H.3
-
8
-
-
84989432221
-
Testing significance of incongruence
-
Farris, J. S., Kallersjo, M., Kluge, A.G., and Bult, C. 1995. Testing significance of incongruence. Cladistics, 10: 315-319.
-
(1995)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
9
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
10
-
-
0031678692
-
SplitsTree: Analyzing and visualizing evolutionary data
-
Huson, D.H. 1998. SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics, 14: 68-73.
-
(1998)
Bioinformatics
, vol.14
, pp. 68-73
-
-
Huson, D.H.1
-
11
-
-
4644289160
-
Root nodule Bradyrhizobium spp. harbor tfdAa and cadA, homologous with genes encoding 2,4-dichlorophenoxyacetic acid-degrading proteins
-
Itoh, K., Tashiro, Y, Uobe, K., Kamagata, Y., Suyama, K., and Yamamoto, H. 2004. Root nodule Bradyrhizobium spp. harbor tfdAa and cadA, homologous with genes encoding 2,4-dichlorophenoxyacetic acid-degrading proteins. Appl. Environ. Microbiol. 70: 2110-2118.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 2110-2118
-
-
Itoh, K.1
Tashiro, Y.2
Uobe, K.3
Kamagata, Y.4
Suyama, K.5
Yamamoto, H.6
-
12
-
-
0036928484
-
Complete genome sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110
-
Kaneko, T., Nakamura, Y., Sato, S., Minamisawa, K., Uchiumi, T., Sasamoto, S., et al. 2002. Complete genome sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res. 9: 189-197.
-
(2002)
DNA Res
, vol.9
, pp. 189-197
-
-
Kaneko, T.1
Nakamura, Y.2
Sato, S.3
Minamisawa, K.4
Uchiumi, T.5
Sasamoto, S.6
-
13
-
-
0026667451
-
Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov
-
Kuykendall, L.D., Saxena, B., Devine, T.E., and Udell, S.E. 1992. Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov. Can. J. Microbiol. 38: 501-505.
-
(1992)
Can. J. Microbiol
, vol.38
, pp. 501-505
-
-
Kuykendall, L.D.1
Saxena, B.2
Devine, T.E.3
Udell, S.E.4
-
14
-
-
0031707698
-
Molecular diversity of rhizobia occurring on native shrubby legumes in southeastern
-
Lafay, B., and Burdon, J.J. 1998. Molecular diversity of rhizobia occurring on native shrubby legumes in southeastern Australia. Appl. Environ. Microbiol. 64: 3989-3997.
-
(1998)
Australia. Appl. Environ. Microbiol
, vol.64
, pp. 3989-3997
-
-
Lafay, B.1
Burdon, J.J.2
-
15
-
-
0035052315
-
Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationships among Phaseolus vulgaris symbionts
-
Laguerre, G., Mour, S.M., Macheret, V., Sanjuan, J., Drouin, P., and Amarger, N. 2001. Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationships among Phaseolus vulgaris symbionts. Microbiology (Reading, U.K.), 147: 981-993.
-
(2001)
Microbiology (Reading, U.K.)
, vol.147
, pp. 981-993
-
-
Laguerre, G.1
Mour, S.M.2
Macheret, V.3
Sanjuan, J.4
Drouin, P.5
Amarger, N.6
-
16
-
-
13444251528
-
RDP2: Recombination detection and analysis from sequence alignments
-
Martin, D.P., Williamson, C., and Posada, D. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics, 21: 260-262.
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
17
-
-
0032975893
-
Photosynthetic bradyrhizobia from Aeschynomene spp. are specific to stem-nodulated species and form a separate 16S ribosomal DNA restriction fragment length polymorphism group
-
Molouba, F., Lorquin, J., Willems, A., Hoste, B., Giraud, E., Dreyfus, B., Gillis, M., de Lajudie, P., and Masson-Boivin, C. 1999. Photosynthetic bradyrhizobia from Aeschynomene spp. are specific to stem-nodulated species and form a separate 16S ribosomal DNA restriction fragment length polymorphism group. Appl. Environ. Microbiol. 65: 3084-3094.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 3084-3094
-
-
Molouba, F.1
Lorquin, J.2
Willems, A.3
Hoste, B.4
Giraud, E.5
Dreyfus, B.6
Gillis, M.7
de Lajudie, P.8
Masson-Boivin, C.9
-
18
-
-
0003681032
-
A checklist of the flora of Ontario vascular plants
-
Waterloo, Ontario, Canada
-
Morton, J.K., and Venn, J.M. 1990. A checklist of the flora of Ontario vascular plants. University of Waterloo Biology Series No. 34. Waterloo, Ontario, Canada.
-
(1990)
University of Waterloo Biology Series
, vol.34
-
-
Morton, J.K.1
Venn, J.M.2
-
19
-
-
10744219797
-
Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus
-
Moulin, L., Bena, G., Boivin-Masson, C., and Stepkowski, T. 2004. Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus. Mol. Phylogenet. Evol. 30: 720-732.
-
(2004)
Mol. Phylogenet. Evol
, vol.30
, pp. 720-732
-
-
Moulin, L.1
Bena, G.2
Boivin-Masson, C.3
Stepkowski, T.4
-
20
-
-
0032755260
-
Relationships of bradyrhizobia from the legumes Apios americana and Desmodium glutinosum
-
Parker, M.A. 1999. Relationships of bradyrhizobia from the legumes Apios americana and Desmodium glutinosum. Appl. Environ. Microbiol. 65: 4914-4920.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 4914-4920
-
-
Parker, M.A.1
-
21
-
-
0035344698
-
Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with neotropical legumes
-
Parker, M.A. 2001. Case of localized recombination in 23S rRNA genes from divergent Bradyrhizobium lineages associated with neotropical legumes. Appl. Environ. Microbiol. 67: 2076-2083.
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 2076-2083
-
-
Parker, M.A.1
-
22
-
-
0036211217
-
Bradyrhizobia from wild Phaseolus, Desmodium and Macroptilium species in northern
-
Parker, M.A. 2002. Bradyrhizobia from wild Phaseolus, Desmodium and Macroptilium species in northern Mexico. Appl. Environ. Microbiol. 68: 2044-2048.
-
(2002)
Mexico. Appl. Environ. Microbiol
, vol.68
, pp. 2044-2048
-
-
Parker, M.A.1
-
23
-
-
0041874641
-
Genetic markers for analyzing symbiotic relationships and lateral gene transfer in neotropical bradyrhizobia
-
Parker, M.A. 2003. Genetic markers for analyzing symbiotic relationships and lateral gene transfer in neotropical bradyrhizobia. Mol. Ecol. 12: 2447-55.
-
(2003)
Mol. Ecol
, vol.12
, pp. 2447-2455
-
-
Parker, M.A.1
-
24
-
-
2642587193
-
rRNA and dnaK relationships of Bradyrhizobium sp. nodule bacteria from four Papilionoid legume trees in Costa Rica
-
Parker, M.A. 2004. rRNA and dnaK relationships of Bradyrhizobium sp. nodule bacteria from four Papilionoid legume trees in Costa Rica. Syst. Appl. Microbiol. 27: 334-342.
-
(2004)
Syst. Appl. Microbiol
, vol.27
, pp. 334-342
-
-
Parker, M.A.1
-
25
-
-
0036667447
-
Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium
-
Parker, M.A., Lafay, B., Burdon, J.J., and van Berkum, P. 2002. Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium. Microbiology, 148: 2557-2565.
-
(2002)
Microbiology
, vol.148
, pp. 2557-2565
-
-
Parker, M.A.1
Lafay, B.2
Burdon, J.J.3
van Berkum, P.4
-
26
-
-
1542289808
-
Comparative phylogeography of Amphicarpaea legumes and their root-nodule symbionts in Japan and North America
-
Parker, M.A., Doyle, J.L., and Doyle, J.J. 2004. Comparative phylogeography of Amphicarpaea legumes and their root-nodule symbionts in Japan and North America. J. Biogeogr. 31: 425-434.
-
(2004)
J. Biogeogr
, vol.31
, pp. 425-434
-
-
Parker, M.A.1
Doyle, J.L.2
Doyle, J.J.3
-
27
-
-
33747414090
-
Growth of an invasive legume is symbiont-limited in newly occupied habitats
-
Parker, M.A., Malek, W., and Parker, I.M. 2006. Growth of an invasive legume is symbiont-limited in newly occupied habitats. Divers. Distrib. 12: 563-571.
-
(2006)
Divers. Distrib
, vol.12
, pp. 563-571
-
-
Parker, M.A.1
Malek, W.2
Parker, I.M.3
-
28
-
-
0034108288
-
Molecular basis of symbiotic promiscuity
-
Perret, X., Staehelin, C., and Broughton, W.J. 2000. Molecular basis of symbiotic promiscuity. Microbiol. Mol. Biol. Rev. 64: 180-201.
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 180-201
-
-
Perret, X.1
Staehelin, C.2
Broughton, W.J.3
-
29
-
-
0345701207
-
rRNA and nifD phylogeny of Bradyrhizobium from sites across the Pacific Basin
-
Qian, J., Kwon, S.W., and Parker, M.A. 2003. rRNA and nifD phylogeny of Bradyrhizobium from sites across the Pacific Basin. FEMS Microbiol. Lett. 219: 159-165.
-
(2003)
FEMS Microbiol. Lett
, vol.219
, pp. 159-165
-
-
Qian, J.1
Kwon, S.W.2
Parker, M.A.3
-
30
-
-
33645318483
-
An empirical test of partner choice mechanisms in a wild legume-rhizobium interaction
-
Simms, E.L., Taylor, D.L., Povich, J., Shefferson, R.P., Sachs, J.L., Urbina, M., and Tausczik, Y. 2006. An empirical test of partner choice mechanisms in a wild legume-rhizobium interaction. Proc. R. Soc. Lond. Ser. B Biol. Sci. 273: 77-81.
-
(2006)
Proc. R. Soc. Lond. Ser. B Biol. Sci
, vol.273
, pp. 77-81
-
-
Simms, E.L.1
Taylor, D.L.2
Povich, J.3
Shefferson, R.P.4
Sachs, J.L.5
Urbina, M.6
Tausczik, Y.7
-
31
-
-
0030046399
-
Nonrandom genotypic associations in a legume-Bradyrhizobium mutualism
-
Spoerke, J.M., Wilkinson, H.H., and Parker, M.A. 1996. Nonrandom genotypic associations in a legume-Bradyrhizobium mutualism. Evolution, 50: 146-154.
-
(1996)
Evolution
, vol.50
, pp. 146-154
-
-
Spoerke, J.M.1
Wilkinson, H.H.2
Parker, M.A.3
-
33
-
-
32044456213
-
European origin of Bradyrhizobium populations infecting lupins and serradella in soils of western Australia and South Africa
-
Stepkowski, T., Moulin, L., Krzyzanska, A., McInnes, A., Law, I.J., and Howieson, J. 2005. European origin of Bradyrhizobium populations infecting lupins and serradella in soils of western Australia and South Africa. Appl. Environ. Microbiol. 71: 7041-7052.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 7041-7052
-
-
Stepkowski, T.1
Moulin, L.2
Krzyzanska, A.3
McInnes, A.4
Law, I.J.5
Howieson, J.6
-
34
-
-
0032883089
-
Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences
-
Sterner, J.P., and Parker, M.A. 1999. Diversity and relationships of bradyrhizobia from Amphicarpaea bracteata based on partial nod and ribosomal sequences. Syst. Appl. Microbiol. 22: 387-392.
-
(1999)
Syst. Appl. Microbiol
, vol.22
, pp. 387-392
-
-
Sterner, J.P.1
Parker, M.A.2
-
35
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgans, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgans, D.G.2
Gibson, T.J.3
-
36
-
-
0034525526
-
Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence
-
van Berkum, P., and Fuhrmann, J.J. 2000. Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence. Int. J. Syst. Evol. Microbiol. 50: 2165-2172.
-
(2000)
Int. J. Syst. Evol. Microbiol
, vol.50
, pp. 2165-2172
-
-
van Berkum, P.1
Fuhrmann, J.J.2
-
37
-
-
0038222576
-
Discordant phylogenies within the rrn loci of Rhizobia
-
van Berkum P., Terefework, Z., Paulin, L., Suomalainen, S., Lindstrom, K., and Eardly, B.D. 2003. Discordant phylogenies within the rrn loci of Rhizobia. J. Bacteriol. 185: 2988-2998.
-
(2003)
J. Bacteriol
, vol.185
, pp. 2988-2998
-
-
van Berkum, P.1
Terefework, Z.2
Paulin, L.3
Suomalainen, S.4
Lindstrom, K.5
Eardly, B.D.6
-
38
-
-
16844373395
-
a. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta
-
Vinuesa, P., Leon-Barrios, M., Silva, C., Willems, A., Jarabo-Lorenzo, A., Perez-Galdona, R., Werner, D., and Martinez-Romero, E. 2005a. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. Int. J. Syst. Evol. Microbiol. 55: 569-575.
-
(2005)
Int. J. Syst. Evol. Microbiol
, vol.55
, pp. 569-575
-
-
Vinuesa, P.1
Leon-Barrios, M.2
Silva, C.3
Willems, A.4
Jarabo-Lorenzo, A.5
Perez-Galdona, R.6
Werner, D.7
Martinez-Romero, E.8
-
39
-
-
9944222667
-
Population genetics and phylogenetic inference in bacterial molecular systematics: The roles of migration and recombination in Bradyrhizobium species cohesion and delineation
-
Vinuesa, P., Silva, C., Werner, D., and Martinez-Romero, E. 2005b. Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation. Mol. Phylogenet. Evol. 34: 29-54.
-
(2005)
Mol. Phylogenet. Evol
, vol.34
, pp. 29-54
-
-
Vinuesa, P.1
Silva, C.2
Werner, D.3
Martinez-Romero, E.4
-
40
-
-
34247362318
-
-
Atlas [online, Available from, last accessed 24 January
-
Weldy, T., and Werier, D. 2005. New York Flora Atlas [online]. Available from http://atlas.nyflora.org [last accessed 24 January 2006].
-
(2005)
New York Flora
-
-
Weldy, T.1
Werier, D.2
-
41
-
-
41049083079
-
Sanctions and mutualism stability: Why do rhizobia fix nitrogen?
-
West, S.A., Kiers, E.T., Simms, E.L., and Denison, R.F. 2002. Sanctions and mutualism stability: Why do rhizobia fix nitrogen? Proc. R. Soc. Lond. Ser. B Biol. Sci. 269: 685-694.
-
(2002)
Proc. R. Soc. Lond. Ser. B Biol. Sci
, vol.269
, pp. 685-694
-
-
West, S.A.1
Kiers, E.T.2
Simms, E.L.3
Denison, R.F.4
-
42
-
-
0035151510
-
Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species
-
Willems, A., Coopman, R., and Gilles, M. 2001. Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species. Int. J. Syst. Evol. Microbiol. 51: 111-117.
-
(2001)
Int. J. Syst. Evol. Microbiol
, vol.51
, pp. 111-117
-
-
Willems, A.1
Coopman, R.2
Gilles, M.3
-
43
-
-
0028784710
-
Bradyrhizobium liaoningense sp. nov. isolated from the root nodules of soybeans
-
Xu, L.M., Ge, C., Cui, Z., Li, J., and Fan, H. 1995. Bradyrhizobium liaoningense sp. nov. isolated from the root nodules of soybeans. Int. J. Syst. Bacteriol. 45: 706-711.
-
(1995)
Int. J. Syst. Bacteriol
, vol.45
, pp. 706-711
-
-
Xu, L.M.1
Ge, C.2
Cui, Z.3
Li, J.4
Fan, H.5
-
44
-
-
0036865629
-
Characterization of rhizobia that nodulate legume species of the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov
-
Yao, Z.Y., Kan, F.L, Wang, E.T., Wei, G.H., and Chen, W.X. 2002. Characterization of rhizobia that nodulate legume species of the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov. Int. J. Syst. Evol. Microbiol. 52: 2219-2230.
-
(2002)
Int. J. Syst. Evol. Microbiol
, vol.52
, pp. 2219-2230
-
-
Yao, Z.Y.1
Kan, F.L.2
Wang, E.T.3
Wei, G.H.4
Chen, W.X.5
|