-
1
-
-
59549105563
-
-
Cleveland,W.S. et al. (1992) Local regression models. In Chambers,J.M. and Hastie,T.J. (eds) Chapter 8 of Statistical Models in S. Wadsworth & Brooks, Cole, pp. 312-316.
-
Cleveland,W.S. et al. (1992) Local regression models. In Chambers,J.M. and Hastie,T.J. (eds) Chapter 8 of Statistical Models in S. Wadsworth & Brooks, Cole, pp. 312-316.
-
-
-
-
2
-
-
33846603341
-
Bacillus subtilis genome diversity
-
Earl,A.M. et al. (2007) Bacillus subtilis genome diversity. J. Bacteriol., 189, 1163-1170.
-
(2007)
J. Bacteriol
, vol.189
, pp. 1163-1170
-
-
Earl, A.M.1
-
3
-
-
46749126836
-
-
Fields Development Team, National Center for Atmospheric Research, Boulder, CO. Available at, last accessed August, 2008
-
Fields Development Team. (2006) Fields: Tools for Spatial Data. National Center for Atmospheric Research, Boulder, CO. Available at http://www.image.ucar.edu/Software/Fields/ (last accessed August, 2008).
-
(2006)
Fields: Tools for Spatial Data
-
-
-
4
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch,W.M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool., 19, 99-113.
-
(1970)
Syst. Zool
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
5
-
-
42449147860
-
A generic approach to identify transcription factor-specific operator motifs; inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1
-
Francke,C. et al. (2008) A generic approach to identify transcription factor-specific operator motifs; inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1. BMC Genomics, 9, 145.
-
(2008)
BMC Genomics
, vol.9
, pp. 145
-
-
Francke, C.1
-
6
-
-
2942571207
-
Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray
-
Fukiya,S. et al. (2004) Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray. J. Bacteriol., 186, 3911-3921.
-
(2004)
J. Bacteriol
, vol.186
, pp. 3911-3921
-
-
Fukiya, S.1
-
7
-
-
0031966661
-
The structural basis of molecular adaptation
-
Golding,G.B. and Dean,A.M. (1998) The structural basis of molecular adaptation. Mol. Biol. Evol., 15, 355-369.
-
(1998)
Mol. Biol. Evol
, vol.15
, pp. 355-369
-
-
Golding, G.B.1
Dean, A.M.2
-
8
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
Hanley,J.A. and McNeil,B.J. (1982) The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology, 143 29-36.
-
(1982)
Radiology
, vol.143
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
-
10
-
-
33845879059
-
SNiPer-HD: Improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays
-
Hua,J. et al. (2007) SNiPer-HD: Improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays. Bioinformatics, 23, 57-63.
-
(2007)
Bioinformatics
, vol.23
, pp. 57-63
-
-
Hua, J.1
-
11
-
-
4143096081
-
Comparative genomic hybridization (CGH)-arrays pave the way for identification of novel cancer-related genes
-
Inazawa,J. et al. (2004) Comparative genomic hybridization (CGH)-arrays pave the way for identification of novel cancer-related genes. Cancer Sci., 95, 559-563.
-
(2004)
Cancer Sci
, vol.95
, pp. 559-563
-
-
Inazawa, J.1
-
12
-
-
0026495364
-
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors
-
Kallioniemi,A. et al. (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science, 258 818-821.
-
(1992)
Science
, vol.258
, pp. 818-821
-
-
Kallioniemi, A.1
-
13
-
-
28344444255
-
A stepwise framework for the normalization of array CGH data
-
Khojasteh,M. et al. (2005) A stepwise framework for the normalization of array CGH data. BMC Bioinformatics, 6, 274.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 274
-
-
Khojasteh, M.1
-
14
-
-
27644472372
-
Orthologs, paralogs, and evolutionary genomics
-
Koonin,E.V. (2005) Orthologs, paralogs, and evolutionary genomics, Annu. Rev. Genet., 39, 309-338.
-
(2005)
Annu. Rev. Genet
, vol.39
, pp. 309-338
-
-
Koonin, E.V.1
-
15
-
-
0034283229
-
Intraspecies variation in bacterial genomes: The need for a species genome concept
-
Lan,R. and Reeves,P.R. (2000) Intraspecies variation in bacterial genomes: The need for a species genome concept. Trends Microbiol., 8, 396-401.
-
(2000)
Trends Microbiol
, vol.8
, pp. 396-401
-
-
Lan, R.1
Reeves, P.R.2
-
16
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova,K. et al. (2006) Comparative genomics of the lactic acid bacteria. Proc. Natl Acad. Sci. USA, 103, 15611-15616.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
-
17
-
-
27444438599
-
The microbial pan-genome
-
Medini,D. et al. (2005) The microbial pan-genome. Curr. Opin. Genet. Dev., 15, 589-594.
-
(2005)
Curr. Opin. Genet. Dev
, vol.15
, pp. 589-594
-
-
Medini, D.1
-
18
-
-
24344475251
-
Exploring Lactobacillus plantarum genome diversity by using microarrays
-
Molenaar,D. et al. (2005) Exploring Lactobacillus plantarum genome diversity by using microarrays. J. Bacteriol., 187, 6119-6127.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6119-6127
-
-
Molenaar, D.1
-
19
-
-
33847105471
-
Spatial normalization of array-CGH data
-
Neuvial,P. et al. (2006) Spatial normalization of array-CGH data. BMC Bioinformatics, 7, 264.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 264
-
-
Neuvial, P.1
-
20
-
-
27744554510
-
Correlation between sequence conservation and the genomic context after gene duplication
-
Notebaart,R.A. et al. (2005) Correlation between sequence conservation and the genomic context after gene duplication, Nucleic Acids Res., 33, 6164-6171.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6164-6171
-
-
Notebaart, R.A.1
-
21
-
-
34249693630
-
A method to address differential bias in genotyping in large-scale association studies
-
Plagnol,V. et al. (2007) A method to address differential bias in genotyping in large-scale association studies. PLoS Genet., 3 e74.
-
(2007)
PLoS Genet
, vol.3
-
-
Plagnol, V.1
-
22
-
-
23944432874
-
Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum
-
Pretzer,G. et al. (2005) Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum. J. Bacteriol., 187, 6128-6136.
-
(2005)
J. Bacteriol
, vol.187
, pp. 6128-6136
-
-
Pretzer, G.1
-
23
-
-
35748932852
-
-
R Development Core Team , R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team (2007) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2007)
R: A Language and Environment for Statistical Computing
-
-
-
24
-
-
36649035092
-
Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting
-
Rademaker,J.L. et al. (2007) Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting. Appl. Environ. Microbiol., 73, 7128-7137.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 7128-7137
-
-
Rademaker, J.L.1
-
25
-
-
49449098862
-
Streptococcus thermophilus core genome: Comparative genome hybridization study of 47 strains
-
Rasmussen,T.B. et al. (2008) Streptococcus thermophilus core genome: Comparative genome hybridization study of 47 strains, Appl. Environ. Microbiol., 74, 4703-4710.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 4703-4710
-
-
Rasmussen, T.B.1
-
26
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm,M. et al. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
-
(2001)
J. Mol. Biol
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
-
27
-
-
0032518163
-
Microbial gene identification using interpolated Markov models
-
Salzberg,S.L. et al. (1998) Microbial gene identification using interpolated Markov models. Nucleic Acids Res., 26, 544-548.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 544-548
-
-
Salzberg, S.L.1
-
28
-
-
12244298154
-
Statistical analysis of high-density oligonucleotide arrays: A multiplicative noise model
-
Sasik,R. et al. (2002) Statistical analysis of high-density oligonucleotide arrays: A multiplicative noise model. Bioinformatics 18, 1633-1640.
-
(2002)
Bioinformatics
, vol.18
, pp. 1633-1640
-
-
Sasik, R.1
-
29
-
-
38349106435
-
Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche
-
Siezen,R.J. et al. (2008) Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche. Appl. Environ. Microbiol., 74 424-436.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 424-436
-
-
Siezen, R.J.1
-
30
-
-
84941185462
-
The Choice of a Class Interval
-
Sturges,H.A. (1926) The Choice of a Class Interval. J. Am. Stat. Assoc., 21, 65-66.
-
(1926)
J. Am. Stat. Assoc
, vol.21
, pp. 65-66
-
-
Sturges, H.A.1
-
31
-
-
35748941336
-
A genotype calling algorithm for the Illumina Bead Array platform
-
Teo,Y.Y. et al. (2007) A genotype calling algorithm for the Illumina Bead Array platform. Bioinformatics, 23, 2741-2746.
-
(2007)
Bioinformatics
, vol.23
, pp. 2741-2746
-
-
Teo, Y.Y.1
-
32
-
-
34247854960
-
Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363
-
Wegmann,U. et al. (2007) Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J. Bacteriol., 189, 3256-3270.
-
(2007)
J. Bacteriol
, vol.189
, pp. 3256-3270
-
-
Wegmann, U.1
-
33
-
-
34547830829
-
A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays
-
Xiao,Y. et al. (2007) A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays. Bioinformatics, 23, 1459-1467.
-
(2007)
Bioinformatics
, vol.23
, pp. 1459-1467
-
-
Xiao, Y.1
-
34
-
-
33845352644
-
High-resolution spatial normalization for microarrays containing embedded technical replicates
-
Yuan,D.S. and Irizarry,R.A. (2006) High-resolution spatial normalization for microarrays containing embedded technical replicates. Bioinformatics, 22, 3054-3060.
-
(2006)
Bioinformatics
, vol.22
, pp. 3054-3060
-
-
Yuan, D.S.1
Irizarry, R.A.2
-
35
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov,E.M. and Apweiler,R. (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics, 17, 847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
|