Identification of candidate SNP (single nucleotide polymorphism) for growth and carcass traits related to QTL on chromosome 6 in Hanwoo (Korean cattle)

Asian-Australasian Journal of Animal Sciences

Volumn 21, Issue 12, 2008, Pages 1703-1709

  Lee, Y S ^a   Lee, J H ^a   Lee, J Y ^a   Kim, J J ^c   Park, H S ^c   Yeo, J S ^b  

^a Yeungnam University   (South Korea)

^b Gyeongbuk Livestock Research Institute   (South Korea)

^c Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

BTA6; Growth; Hanwoo; QTL; SNP

Indexed keywords

ANIMALIA; BOS; BOS TAURUS; CANIS FAMILIARIS;

EID: 59549091624     PISSN: 10112367     EISSN: None     Source Type: Journal    
DOI: 10.5713/ajas.2008.80223     Document Type: Article

References (20)

1. Casas, E., S. D. Shackelford, J. W. Keele, R. T. Stone, S. M. Kappes and M. Koohmaraie. 2000. Quantitative trait loci affecting growth and carcass composition of cattle segregating alternate forms of myostatin. J. Anim. Sci. 78:560-569.
2. Casas, E., S. D. Shackelford, J. W. Keele, M. Koohmaraie, T. P. L. Smith and R. T. Stone. 2003. Detection of quantitative trait loci for growth and carcass composition in cattle. J. Anim. Sci. 81:2976-2983.
3. Chung, E. R. and W. T. Kim. 2005. Association of SNP marker in IGF_1 and MYF5 candidate genes with growth traits in Korean cattle. Asian-Aust. J. Anim. Sci. 18:1061-1065.
4. Connor, E. E., T. S. Sonstegard, M. S. Ashwell, G. L. Bennett and J. L. Williams. 2004. An expanded comparative map of bovine chromosome 27 targeting dairy form QTL regions. Anim. Genet. 35:265-269.
5. Ihara, N., A. Takasuga, K. Mizoshita, H. Takeda, M. Sugimoto, Y. Mizoguchi, T. Hirano, T. Itoh, T. Watanabe, K. M. Reed, W. M. Snelling, S. M. Kappes, C. W. Beattie, G. L. Bennett and Y. Sugimoto. 2004. A comprehensive genetic map of the cattle genome based on 3802 Microsatellites. Genome. Res. 14:1987-1998.
6. Joulia, D., H Bernardi, V Garandel, F Rabenoelina, B Vernus and G. Cabello. 2003. Mechanisms involved in the inhibition of myoblast proliferation and differentiation by myostatin. Exp. Cell. Res. 286:263-275.
7. Kim, J. W., S. I. Park and J. S. Yeo. 2003. Linkage mapping and QTL on chromosome 6 in Hanwoo (Korean Cattle). Asian-Aust. J. Anim. Sci. 16:1402-1405.
8. Kneeland, J., C. Li, J. Basarab, W. M. Snelling, B. Benkel, B. Murdoch, C. Hansen and S. S. Moore. 2004. Identification and fine mapping of quantitative trait loci for growth traits on bovine chromosomes 2, 6, 14, 19, 21, and 23 within one commercial line of Bos taurus. J. Anim. Sci. 82:3405-3414.
9. Lee, J. Y., J. C. Kwon and J. J. Kim. 2008. Multifactor dimensionality reduction (MDR) analysis to detect single nucleotide polymorphisms associated with a carcass trait in a Hanwoo population. Asian-Aust. J. Anim. Sci. 21:784-788.
10. Martyn, J. K., J. J. Bass and J. M. Oldham. 2004. Skeletal muscle development in normal and double-muscled cattle. Anat. Rec. Part. A. 281A:1363-1371.
11. McPherron, A. C. and S. J. Lee. 1997. Double muscling in cattle due to mutations in the myostatin gene. Proc. Natl. Acad. Sci. 94:12457-12461.
12. Reich, D. E., M. Cargill, S. Bolk, J. Ireland, P. C. Sabeti, D. J. Richter, T. Lavery, R. Kouyoumjian, S. F. Farhadian, R. Ward and E. S. Lander. 2001. Linkage disequilibrium in the human genome. Nature 411:199-204.
13. Rios, R., I Cameiro, V. Arce and J. Devesa. 2003. Myostatin is an inhibitor of myogenic differentiation. Am. J. Physiol. 282:993-999.
14. Sambrook, J. and D. W. Russell. 2001. Molecular cloning. 3rd Ed. Cold Spring Harbor Laboratory Press. Cold Spring Harbor. New York. pp. 6:28-30.
15. Sherman, E. L., J. D. Nkrumah, B. M. Murdoch, C. Li, Z. Wang, A. Fu and S. S. Moore. 2008. Polymorphisms and haplotypes in the bovine NPY, GHR, GHRL, IGF2, UCP2, and UCP3 genes and their associations with measures of growth, performance, feed efficiency and carcass merit in beef cattle. J. Anim. Sci. (In press)
16. Snelling, W. M., E. Casas, R. T. Stone, J. W. Keele, G. P. Harhay, G. L. Bennett and T. P. L. Smith. 2005. Linkage mapping bovine EST-based SNP. BMC. Genet. 6:74-83.
17. Thue, T. D. and F. C. Buchanan. 2004. Linkage mapping of NPY to bovine chromosome 4. Anim. Genet. 35:245-264.
18. Vreeland, W. N., R. J. Meagher and A. E. Barron. 2002. Multiplexed, highthroughput genotyping by single-base extension and endlabeled free_solution electrophoresis. Anal. Chem. 74(17):4328-4333.
19. Weikard, R., C. Kühn, T. Goldammer, G. Freyer and M. Schwerin. 2005. The bovine PPARGC1A gene: molecular characterization and association of an SNP with variation of milk fat synthesis. Physiol. Genomics. 21:1-13.
20. Wiltshire, T., M. T. Pletcher, S. Batalov, B. S. Whitney, L. M. Tarantino, M. P. Cooke, H. Wu, K. Smylie, A. Santrosyan, N. G. Copeland, N. A. Jenkins, F. Kalush, R. J. Mural, R. J. Glynne, S. A. Kay, M. D. Adams and C. F. Fletcher. 2003. Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouse. Proceeding of the National Academy of Sciences of the United States of America. 100:3380-3385.