DETORQUEO, QUIRKY, and ZERZAUST represent novel components involved in organ development mediated by the receptor-like kinase STRUBBELIG in Arabidopsis thaliana

PLoS Genetics

Volumn 5, Issue 1, 2009, Pages

  Fulton, Lynette ^a   Batoux, Martine ^a,e   Vaddepalli, Prasad ^a   Yadav, Ram Kishor ^a,f   Busch, Wolfgang ^b,g   Andersen, Stig U ^b,h   Jeong, Sangho ^c,i   Lohmann, Jan U ^b,d   Schneitz, Kay ^a  

^a TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^b MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF HEIDELBERG   (Germany)

^e SAINSBURY LABORATORY   (United Kingdom)

^f UNIVERSITY OF CALIFORNIA   (United States)

^g DUKE UNIVERSITY   (United States)

^h AARHUS UNIVERSITY   (Denmark)

ⁱ UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; MEMBRANE PROTEIN; PHOSPHOTRANSFERASE; ARABIDOPSIS PROTEIN; DETORQEO PROTEIN, ARABIDOPSIS; PROTEIN KINASE; QUIRKY PROTEIN, ARABIDOPSIS; SUB PROTEIN, ARABIDOPSIS; ZERZAUST PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; ARTICLE; CELL STRESS; CELL WALL; CONTROLLED STUDY; DETERQUEO GENE; FLOWER MORPHOLOGY; GENE; GENE EXPRESSION; GENE IDENTIFICATION; GENE ISOLATION; GENE MUTATION; GENETIC ANALYSIS; HEREDITY; LEAF MORPHOLOGY; MOLECULAR CLONING; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; ORGANOGENESIS; OVULE; PHENOTYPE; QUIRKY GENE; STRUBBELIG GENE; ZERZAUST GENE; FLOWER; GENE EXPRESSION PROFILING; GENETICS; GROWTH, DEVELOPMENT AND AGING; MERISTEM; METABOLISM; MOLECULAR GENETICS; MUTATION; PLANT ROOT;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; FLOWERS; GENE EXPRESSION PROFILING; MERISTEM; MOLECULAR SEQUENCE DATA; MUTATION; PHENOTYPE; PLANT ROOTS; PROTEIN KINASES;

EID: 59249106816     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000355     Document Type: Article

References (132)

1. Steeves TA, Sussex IM (1989) Patterns in Plant Development. Cambridge: Cambridge University Press.
2. Satina S, Blakeslee AF, Avery AG (1940) Demonstration of the three germ layers in the shoot apex of Datura by means of induced polyploidy in periclinal chimeras. Am J Bot 27: 895-905.
3. Satina S (1945) Periclinal chimeras in Datura in relation to the development and structure of the ovule. Am J Bot 32: 72-81.
4. Satina S, Blakeslee AF (1941) Periclinal chimeras in Datura stramonium in relation to development of leaf and flower. Am J Bot 28: 862-871.
5. Jenik PD, Irish VF (2000) Regulation of cell proliferation patterns by homeotic genes during Arabidopsis floral development. Development 127: 1267-1276.
6. Szymkowiak EJ, Sussex IM (1996) What chimeras can tell us about plant development. Annu Rev Plant Physiol Plant Mol Biol 47: 351-376.
7. Tilney-Bassett RAE (1986) Plant chimeras. London: E. Arnold.
8. Gallagher KL, Benfey PN (2005) Not just another hole in the wall: understanding intercellular protein trafficking. Genes Dev 19: 189-195.
9. Ingram GC, Waites R (2006) Keeping it together: co-ordinating plant growth. Curr Opin Plant Biol 9: 12-20.
10. Ingram GC (2004) Between the sheets: inter-cell-layer communication in plant development. Philos Trans R Soc Lond B Biol Sci 359: 891-906.
11. Williams L, Fletcher JC (2005) Stem cell regulation in the Arabidopsis shoot apical meristem. Curr Opin Plant Biol 8: 582-586.
12. Savaldi-Goldstein S, Peto C, Chory J (2007) The epidermis both drives and restricts plant shoot growth. Nature 446: 199-202.
13. Reinhardt D, Frenz M, Mandel T, Kuhlemeier C (2003) Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem. Development 130: 4073-4083.
14. Conti L, Bradley D (2007) TERMINAL FLOWER1 is a mobile signal controlling Arabidopsis architecture. Plant Cell 19: 767-778.
15. Jackson D (2002) Double labeling of KNOTTED1 mRNA and protein reveals multiple potential sites of protein trafficking in the shoot apex. Plant Physiol 129: 1423-1429.
16. Lucas WJ, Bouche-Pillon S, Jackson DP, Nguyen L, Baker L, et al. (1995) Selective trafficking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata. Science 270: 1980-1983.
17. Perbal M-C, Haughn G, Saedler H, Schwarz-Sommer Z (1996) Non-cell-autonomous function of the Antirrhinum floral homeotic proteins DEFICIENS and GLOBOSA is exerted by their polar cell-to-cell trafficking. Development 122: 3433-3441.
18. Cui H, Levesque MP, Vernoux T, Jung JW, Paquette AJ, et al. (2007) An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 316: 421-425.
19. Nakajima K, Sena G, Nawy T, Benfey PN (2001) Intercellular movement of the putative transcription factor SHR in root patterning. Nature 413: 307-311.
20. Becraft PW, Stinard PS, McCarty DR (1996) CRINCLY4: a TNFR-like receptor kinase involved in maize epidermal differentiation. Science 273: 1406-1409.
21. Becraft PW, Kang SH, Suh SG (2001) The maize CRINKLY4 receptor kinase controls a cell-autonomous differentiation response. Plant Physiol 127: 486-496.
22. Gifford ML, Dean S, Ingram GC (2003) The Arabidopsis ACR4 gene plays a role in cell layer organisation during ovule integument and sepal margin development. Development 130: 4249-4258.
23. Tanaka H, Watanabe M, Sasabe M, Hiroe T, Tanaka T, et al. (2007) Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis. Development 134: 1643-1652.
24. Watanabe M, Tanaka H, Watanabe D, Machida C, Machida Y (2004) The ACR4 receptor-like kinase is required for surface formation of epidermis-related tissues in Arabidopsis thaliana. Plant J 39: 298-308.
25. Chevalier D, Batoux M, Fulton L, Pfister K, Yadav RK, et al. (2005) STRUBBELIG defines a receptor kinase-mediated signaling pathway regulating organ development in Arabidopsis. Proc Natl Acad Sci USA 102: 9074-9079.
26. Kwak SH, Schiefelbein J (2007) The role of the SCRAMBLED receptor-like kinase in patterning the Arabidopsis root epidermis. Dev Biol 302: 118-131.
27. Kwak SH, Shen R, Schiefelbein J (2005) Positional signaling mediated by a receptor-like kinase in Arabidopsis. Science 307: 1111-1113.
28. Yadav RK, Fulton L, Batoux M, Schneitz K (2008) The Arabidopsis receptor-like kinase STRUBBELIG mediates inter-cell-layer signaling during floral development. Dev Biol 323: 261-270.
29. Eyüboglu B, Pfister K, Haberer G, Chevalier D, Fuchs A, et al. (2007) Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana. BMC Plant Biol 7: 16.
30. Shiu S-H, Bleecker AB (2001) Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci USA 98: 10763-10768.
31. Castells E, Casacuberta JM (2007) Signalling through kinase-defective domains: the prevalence of atypical receptor-like kinases in plants. J Exp Bot.
32. Kroiher M, Miller MA, Steele RE (2001) Deceiving appearances: signaling by "dead" and "fractured" receptor protein-tyrosine kinases. BioEssays 23: 69-76.
33. Masucci JD, Rerie WG, Foreman DR, Zhang M, Galway ME, et al. (1996) The homeobox gene GLABRA 2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana. Development 122: 1253-1260.
34. Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, et al. (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501-506.
35. Kanter U, Usadel B, Guerineau F, Li Y, Pauly M, et al. (2005) The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides. Planta 221: 243-254.
36. Carter C, Graham RA, Thornburg RW (1998) Arabidopsis thaliana contains a large family of germin-like proteins: characterization of cDNA and genomic sequences encoding 12 unique family members. Plant Mol Biol 38: 929-943.
37. Aufsatz W, Amry D, Grimm C (1998) The ECS1 gene of Arabidopsis encodes a plant cell wall-associated protein and is potentially linked to a locus influencing resistance to Xanthomonas campestris. Plant Mol Biol 38: 965-976.
38. Chini A, Fonseca S, Fernandez G, Adie B, Chico JM, et al. (2007) The JAZ family of repressors is the missing link in jasmonate signalling. Nature 448: 666-671.
39. Thines B, Katsir L, Melotto M, Niu Y, Mandaokar A, et al. (2007) JAZ repressor proteins are targets of the SCF(COI1) complex during jasmonate signalling. Nature 448: 661-665.
40. Kiyosue T, Yoshiba Y, Yamaguchi-Shinozaki K, Shinozaki K (1996) A nuclear gene encoding mitochondrial proline dehydrogenase, an enzyme involved in proline metabolism, is upregulated by proline but downregulated by dehydration in Arabidopsis. Plant Cell 8: 1323-1335.
41. Mowla SB, Cuypers A, Driscoll SP, Kiddle G, Thomson J, et al. (2006) Yeast complementation reveals a role for an Arabidopsis thaliana late embryogenesis abundant (LEA)-like protein in oxidative stress tolerance. Plant J 48: 743-756.
42. Weaver LM, Gan S, Quirino B, Amasino RM (1998) A comparison of the expression patterns of several senescence-associated genes in response to stress and hormone treatment. Plant Mol Biol 37: 455-469.
43. Leyman B, Van Dijck P, Thevelein JM (2001) An unexpected plethora of trehalose biosynthesis genes in Arabidopsis thaliana. Trends Plant Sci 6: 510-513.
44. Ramon M, Rolland F (2007) Plant development: introducing trehalose metabolism. Trends Plant Sci 12: 185-188.
45. Chary SN, Hicks GR, Choi YG, Carter D, Raikhel NV (2008) Trehalose-6-phosphate synthase/phosphatase regulates cell shape and plant architecture in Arabidopsis. Plant Physiol 146: 97-107.
46. Goyal K, Walton LJ, Tunnacliffe A (2005) LEA proteins prevent protein aggregation due to water stress. Biochem J 388: 151-157.
47. Grennan AK (2007) The role of trehalose biosynthesis in plants. Plant Physiol 144: 3-5.
48. Nakashima K, Satoh R, Kiyosue T, Yamaguchi-Shinozaki K, Shinozaki K (1998) A gene encoding proline dehydrogenase is not only induced by proline and hypoosmolarity, but is also developmentally regulated in the reproductive organs of Arabidopsis. Plant Physiol 118: 1233-1241.
49. Peng Z, Lu Q, Verma DPS. Reciprocal regulation of D1-pyrroline-5- carboxylate synthetase and proline dehydrogenase genes controls proline levels during and after osmotic stress in plants. Mol Gen Genet 253: 334-341.
50. Verbruggen N, Hua XJ, May M, Van Montagu M (1996) Environmental and developmental signals modulate proline homeostasis: evidence for a negative transcriptional regulator. Proc Natl Acad Sci U S A 93: 8787-8791.
51. Grubb CD, Abel S (2006) Glucosinolate metabolism and its control. Trends Plant Sci 11: 89-100.
52. Yan X, Chen S (2007) Regulation of plant glucosinolate metabolism. Planta 226: 1343-1352.
53. Bartel B, Fink GR (1995) ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates. Science 268: 1745-1748.
54. LeClere S, Tellez R, Rampey RA, Matsuda SP, Bartel B (2002) Characterization of a family of IAA-amino acid conjugate hydrolases from Arabidopsis. J Biol Chem 277: 20446-20452.
55. Barlier I, Kowalczyk M, Marchant A, Ljung K, Bhalerao R, et al. (2000) The SUR2 gene of Arabidopsis thaliana encodes the cytochrome P450 CYP83B1, a modulator of auxin homeostasis. Proc Natl Acad Sci U S A 97: 14819-14824.
56. Bak S, Tax FE, Feldmann KA, Galbraith DW, Feyereisen R (2001) CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis. Plant Cell 13: 101-111.
57. Hull AK, Vij R, Celenza JL (2000) Arabidopsis cytochrome P450s that catalyze the first step of tryptophan-dependent indole-3-acetic acid biosynthesis. Proc Natl Acad Sci U S A 97: 2379-2384.
58. Mikkelsen MD, Hansen CH, Wittstock U, Halkier BA (2000) Cytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid. J Biol Chem 275: 33712-33717.
59. Glawischnig E, Hansen BG, Olsen CE, Halkier BA (2004) Camalexin is synthesized from indole-3-acetaldoxime, a key branching point between primary and secondary metabolism in Arabidopsis. Proc Natl Acad Sci U S A 101: 8245-8250.
60. Glazebrook J, Ausubel FM (1994) Isolation of phytoalexin-deficient mutants of Arabidopsis thaliana and characterization of their interactions with bacterial pathogens. Proc Natl Acad Sci U S A 91: 8955-8959.
61. Nafisi M, Goregaoker S, Botanga CJ, Glawischnig E, Olsen CE, et al. (2007) Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis. Plant Cell 19: 2039-2052.
62. Schuhegger R, Nafisi M, Mansourova M, Petersen BL, Olsen CE, et al. (2006) CYP71B15 (PAD3) catalyzes the final step in camalexin biosynthesis. Plant Physiol 141: 1248-1254.
63. Zhou N, Tootle TL, Glazebrook J (1999) Arabidopsis PAD3, a gene required for camalexin biosynthesis, encodes a putative cytochrome P450 monooxygenase. Plant Cell 11: 2419-2428.
64. Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, et al. (2008) The Pfam protein families database. Nucleic Acids Res 36: D281-8.
65. Shin OH, Han W, Wang Y, Südhof TC (2005) Evolutionarily conserved multiple C2 domain proteins with two transmembrane regions (MCTPs) and unusual Ca2+ binding properties. J Biol Chem 280: 1641-1651.
66. Maeda I, Kohara Y, Yamamoto M, Sugimoto A (2001) Large-scale analysis of gene function in Caenorhabditis elegans by high-throughput RNAi. Curr Biol 11: 171-176.
67. Bai J, Chapman ER (2004) The C2 domains of synaptotagmin-partners in exocytosis. Trends Biochem Sci 29: 143-151.
68. Rizo J, Südhof TC (1998) C2-domains, structure and function of a universal Ca2+-binding domain. J Biol Chem 273: 15879-15882.
69. Sondermann H, Kuriyan J (2005) C2 can do it, too. Cell 121: 158-160.
70. Südhof TC (2002) Synaptotagmins: why so many? J Biol Chem 277: 7629-7632.
71. Min SW, Chang WP, Südhof TC (2007) E-Syts, a family of membranous Ca2+-sensor proteins with multiple C2 domains. Proc Natl Acad Sci U S A 104: 3823-3828.
72. Bansal D, Campbell KP (2004) Dysferlin and the plasma membrane repair in muscular dystrophy. Trends Cell Biol 14: 206-213.
73. Andrews NW (2002) Lysosomes and the plasma membrane: trypanosomes reveal a secret relationship. J Cell Biol 158: 389-394.
74. McNeil PL, Steinhardt RA (2003) Plasma membrane disruption: repair, prevention, adaptation. Annu Rev Cell Dev Biol 19: 697-731.
75. Chieregatti E, Meldolesi J (2005) Regulated exocytosis: new organelles for nonsecretory purposes. Nat Rev Mol Cell Biol 6: 181-187.
76. Reddy A, Caler EV, Andrews NW (2001) Plasma membrane repair is mediated by Ca(2+)-regulated exocytosis of lysosomes. Cell 106: 157-169.
77. Borgonovo B, Cocucci E, Racchetti G, Podini P, Bachi A, et al. (2002) Regulated exocytosis: a novel, widely expressed system. Nat Cell Biol 4: 955-962.
78. Cocucci E, Racchetti G, Podini P, Meldolesi J (2007) Enlargeosome traffic: exocytosis triggered by various signals is followed by endocytosis, membrane shedding or both. Traffic 8: 742-757.
79. Geppert M, Goda Y, Hammer RE, Li C, Rosahl TW, et al. (1994) Synaptotagmin I: a major Ca2+ sensor for transmitter release at a central synapse. Cell 79: 717-727.
80. Fernández-Chacón R, Königstorfer A, Gerber SH, García J, Matos MF, et al. (2001) Synaptotagmin I functions as a calcium regulator of release probability. Nature 410: 41-49.
81. Achanzar WE, Ward S (1997) A nematode gene required for sperm vesicle fusion. J Cell Sci 110: 1073-1081.
82. Washington NL, Ward S (2006) FER-1 regulates Ca2+ -mediated membrane fusion during C. elegans spermatogenesis. J Cell Sci 119: 2552-2562.
83. Bashir R, Britton S, Strachan T, Keers S, Vafiadaki E, et al. (1998) A gene related to Caenorhabditis elegans spermatogenesis factor fer-1 is mutated in limb-girdle muscular dystrophy type 2B. Nat Genet 20: 37-42.
84. Bansal D, Miyake K, Vogel SS, Groh S, Chen CC, et al. (2003) Defective membrane repair in dysferlin-deficient muscular dystrophy. Nature 423: 168-172.
85. Liu J, Aoki M, Illa I, Wu C, Fardeau M, et al. (1998) Dysferlin, a novel skeletal muscle gene, is mutated in Miyoshi myopathy and limb girdle muscular dystrophy. Nat Genet 20: 31-36.
86. Lennon NJ, Kho A, Bacskai BJ, Perlmutter SL, Hyman BT, et al. (2003) Dysferlin interacts with annexins A1 and A2 and mediates sarcolemmal wound-healing. J Biol Chem 278: 50466-50473.
87. Dong X (2005) NPR1, all things considered. Curr Opin Plant Biol 7: 547-552.
88. Eulgem T, Somssich IE (2007) Networks of WRKY transcription factors in defense signaling. Curr Opin Plant Biol 10: 366-371.
89. Glazebrook J (2005) Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. Annu Rev Phytopathol 43: 205-227.
90. Jones JD, Dangl JL (2006) The plant immune system. Nature 444: 323-329.
91. Wiermer M, Feys BJ, Parker JE (2005) Plant immunity: the EDS1 regulatory node. Curr Opin Plant Biol 8: 383-389.
92. Strawn MA, Marr SK, Inoue K, Inada N, Zubieta C, et al. (2007) Arabidopsis isochorismate synthase functional in pathogen-induced salicylate biosynthesis exhibits properties consistent with a role in diverse stress responses. J Biol Chem 282: 5919-5933.
93. Wildermuth MC, Dewdney J, Wu G, Ausubel FM (2001) Isochorismate synthase is required to synthesize salicylic acid for plant defence. Nature 414: 562-565.
94. Nawrath C, Heck S, Parinthawong N, Metraux JP (2002) EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family. Plant Cell 14: 275-286.
95. Jagadeeswaran G, Raina S, Acharya BR, Maqbool SB, Mosher SL, et al. (2007) Arabidopsis GH3-LIKE DEFENSE GENE 1 is required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Plant J 51: 234-246.
96. Nobuta K, Okrent RA, Stoutemyer M, Rodibaugh N, Kempema L, et al. (2007) The GH3 acyl adenylase family member PBS3 regulates salicylic acid-dependent defense responses in Arabidopsis. Plant Physiol 144: 1144-1156.
97. Falk A, Feys BJ, Frost LN, Jones JD, Daniels MJ, et al. (1999) EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases. Proc Natl Acad Sci U S A 96: 3292-3297.
98. Weigel RR, Pfitzner UM, Gatz C (2005) Interaction of NIMIN1 with NPR1 modulates PR gene expression in Arabidopsis. Plant Cell 17: 1279-1291.
99. Ndamukong I, Abdallat AA, Thurow C, Fode B, Zander M, et al. (2007) SA-inducible Arabidopsis glutaredoxin interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. Plant J 50: 128-139.
100. Wang D, Amornsiripanitch N, Dong X (2006) A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PLoS Pathog 2: e123.
101. Li J, Brader G, Kariola T, Tapio Palva E (2006) WRKY70 modulates the selection of signaling pathways in plant defense. Plant J 46: 477-491.
102. Li J, Brader G, Tapio Palva E (2004) The WRKY70 transcription factor: a node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense. Plant Cell 16: 319-331.
103. AbuQamar S, Chen X, Dhawan R, Bluhm B, Salmeron J, et al. (2006) Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. Plant J 48: 28-44.
104. Knoth C, Ringler J, Dangl JL, Eulgem T (2007) Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica. Mol Plant Microbe Interact 20: 120-128.
105. Zheng Z, Qamar SA, Chen Z, Mengiste T (2006) Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Plant J 48: 592-605.
106. Uknes S, Mauch-Mani B, Moyer M, Potter S, Williams S, et al. (1992) Acquired resistance in Arabidopsis. Plant Cell 4: 645-656.
107. Johnson C, Boden E, Arias J (2003) Salicylic acid and NPR1 induce the recruitment of trans-activating TGA factors to a defense gene promoter in Arabidopsis. Plant Cell 15: 1846-1858.
108. Zhang Y, Tessaro MJ, Lassner M, Li X (2003) Knockout analysis of Arabidopsis transcription factors TGA2, TGA5, and TGA6 reveals their redundant and essential roles in systemic acquired resistance. Plant Cell 15: 2647-2653.
109. Lerouxel O, Cavalier DM, Liepman AH, Keegstra K (2006) Biosynthesis of plant cell wall polysaccharides - a complex process. Curr Opin Plant Biol 9: 621-630.
110. He Z-H, He D, Kohorn BD (1998) Requirement for the induced expression of a cell wall associated receptor kinase for survival during the pathogen response. Plant J 14: 55-63.
111. Hématy K, Sado PE, Van Tuinen A, Rochange S, Desnos T, et al. (2007) A receptor-like kinase mediates the response of Arabidopsis cells to the inhibition of cellulose synthesis. Curr Biol 17: 922-931.
112. Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, et al. (2003) Genomewide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653-657.
113. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning. Plainview, NY: Cold Spring Harbor Laboratory Press.
114. Odell JT, Nagy F, Chua NH (1985) Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature 313: 810-812.
115. Gleave AP (1992) A versatile binary vector system with a T-DNA organisational structure conducive to efficient integration of cloned DNA into the plant genome. Plant Molecular Biology 20: 1203-1207.
116. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735-743.
117. Koncz C, Schell J (1986) The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel Agrobacterium binary vector. Mol Gen Genet 204: 383-396.
118. Shih MC, Heinrich P, Goodmann HM (1991) Cloning and chromosomal mapping of nuclear genes encoding chloroplast and cytosolic glyceraldehyde-3-phosphate dehydrogenase from Arabidopsis thaliana. Gene 104: 133-138.
119. Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, et al. (2002) Arabidopsis map-based cloning in the post-genome era. Plant Physiol 129: 440-450.
120. Seki M, Narusaka M, Kamiya A, Ishida J, Satou M, et al. (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science 296: 141-145.
121. Frohman MA, Dush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts-amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85: 8998-9002.
122. Krogh A, Larsson B, von Heijne G, Sonnhammer EL (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
123. Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139: 5-17.
124. Clark SE, Running MP, Meyerowitz EM (1993) Clavata1, a regulator of meristem and flower development in Arabidopsis. Development 119: 397-418.
125. Jefferson RA, Burgess SM, Hirsch D (1986) ß-glucuronidase from Escherichia coli as a gene fusion marker. Proc Natl Acad Sci USA 83: 8447-8451.
126. Schneitz K, Hülskamp M, Pruitt RE (1995) Wild-type ovule development in Arabidopsis thaliana: a light microscope study of cleared whole-mount tissue. Plant J 7: 731-749.
127. Schneitz K, Hülskamp M, Kopczak SD, Pruitt RE (1997) Dissection of sexual organ ontogenesis: a genetic analysis of ovule development in Arabidopsis thaliana. Development 124: 1367-1376.
128. Sieburth LE, Meyerowitz EM (1997) Molecular dissection of the AGAMOUS control region shows that cis elements for spatial regulation are located intragenically. Plant Cell 9: 355-365.
129. Schmid M, Uhlenhaut NH, Godard F, Demar M, Bressan R, et al. (2003) Dissection of floral induction pathways using global expression analysis. Development 130: 6001-6012.
130. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
131. Wu Z, Irizarry RA, Gentleman RC, Murillo FM, Spencer F (2004) A model based background adjustment for oligonucleotide expression arrays. Johns Hopkins University, Dept of Biostatistics Working Papers Working Paper 1:.
132. Team RDC (2007) R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.