-
1
-
-
0031784421
-
Enzyme activity below the dynamical transition at 220 K
-
Daniel, R. M., J. C. Smith, M. Ferrand, S. Héry, R. Dunn, et al. 1998. Enzyme activity below the dynamical transition at 220 K. Biophys. J. 75:2504-2507.
-
(1998)
Biophys. J
, vol.75
, pp. 2504-2507
-
-
Daniel, R.M.1
Smith, J.C.2
Ferrand, M.3
Héry, S.4
Dunn, R.5
-
2
-
-
0041852853
-
The role of dynamics in enzyme activity
-
Daniel, R. M., R. V. Dunn, J. L. Finney, and J. C. Smith. 2003. The role of dynamics in enzyme activity. Annu. Rev. Biophys. Biomol. Struct. 32:69-92.
-
(2003)
Annu. Rev. Biophys. Biomol. Struct
, vol.32
, pp. 69-92
-
-
Daniel, R.M.1
Dunn, R.V.2
Finney, J.L.3
Smith, J.C.4
-
4
-
-
0003525155
-
Proteins: A Theoretical Perspective of Dynamics
-
John Wiley & Sons, New York, NY
-
Brooks III, C. L., M. Karplus, and B. M. Pettitt. 1988. Proteins: A Theoretical Perspective of Dynamics. Structure, and Thermodynamics. John Wiley & Sons, New York, NY.
-
(1988)
Structure, and Thermodynamics
-
-
Brooks III, C.L.1
Karplus, M.2
Pettitt, B.M.3
-
5
-
-
0001120344
-
Normal-mode analysis of liquid-state dynamics
-
Seeley, G., and T. Keyes. 1989. Normal-mode analysis of liquid-state dynamics. J. Chem. Phys. 91:5581-5586.
-
(1989)
J. Chem. Phys
, vol.91
, pp. 5581-5586
-
-
Seeley, G.1
Keyes, T.2
-
6
-
-
36449006965
-
Unstable modes in liquids density of states, potential energy, and heat capacity
-
Madan, B., and T. Keyes. 1993. Unstable modes in liquids density of states, potential energy, and heat capacity. J. Chem. Phys. 98:3342-3350.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 3342-3350
-
-
Madan, B.1
Keyes, T.2
-
7
-
-
36449004640
-
Unstable modes in supercooled and normal liquids: Density of states, energy barriers, and self-diffusion
-
Keyes, T. 1994. Unstable modes in supercooled and normal liquids: density of states, energy barriers, and self-diffusion. J. Chem. Phys. 101:5081-5092.
-
(1994)
J. Chem. Phys
, vol.101
, pp. 5081-5092
-
-
Keyes, T.1
-
8
-
-
4043137947
-
Instantaneous normal mode approach to liquid state dynamics
-
Keyes, T. 1997. Instantaneous normal mode approach to liquid state dynamics. J. Phys. Chem. A. 101:2921-2930.
-
(1997)
J. Phys. Chem. A
, vol.101
, pp. 2921-2930
-
-
Keyes, T.1
-
9
-
-
4243264015
-
Dynamics of structural transitions in liquids
-
Stillinger, F. H., and T. A. Weber. 1983. Dynamics of structural transitions in liquids. Phys. Rev. A. 28:2408-2416.
-
(1983)
Phys. Rev. A
, vol.28
, pp. 2408-2416
-
-
Stillinger, F.H.1
Weber, T.A.2
-
10
-
-
0013659665
-
Inherent structure in water
-
Stillinger, F. H., and T. A. Weber. 1983. Inherent structure in water. J. Phys. Chem. 87:2833-2840.
-
(1983)
J. Phys. Chem
, vol.87
, pp. 2833-2840
-
-
Stillinger, F.H.1
Weber, T.A.2
-
11
-
-
0023140044
-
Multiple conformational states of proteins: A molecular dynamics analysis of myoglobin
-
Elber, R., and M. Karplus. 1987. Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin. Science. 235:318-321.
-
(1987)
Science
, vol.235
, pp. 318-321
-
-
Elber, R.1
Karplus, M.2
-
12
-
-
4243861085
-
Random-energy model: An exactly solvable model of disordered systems
-
Derrida, B. 1981. Random-energy model: an exactly solvable model of disordered systems. Phys. Rev. B. 24:2613-2626.
-
(1981)
Phys. Rev. B
, vol.24
, pp. 2613-2626
-
-
Derrida, B.1
-
13
-
-
0024733407
-
Intermediates and barrier crossing in a random energy model(with applications to protein folding)
-
Bryngleson, J. D., and P. G. Wolynes. 1989. Intermediates and barrier crossing in a random energy model(with applications to protein folding). J. Phys. Chem. 93:6902-6915.
-
(1989)
J. Phys. Chem
, vol.93
, pp. 6902-6915
-
-
Bryngleson, J.D.1
Wolynes, P.G.2
-
14
-
-
37649030781
-
Random energy model for dynamics in supercooled liquids: N dependence
-
Keyes, T., J. Chowdhary, and J. Kim. 2002. Random energy model for dynamics in supercooled liquids: N dependence. Phys. Rev. E. 66:051110.
-
(2002)
Phys. Rev. E
, vol.66
, pp. 051110
-
-
Keyes, T.1
Chowdhary, J.2
Kim, J.3
-
15
-
-
25544470998
-
Instantaneous normal mode analysis of supercooled water
-
La Nave, E., A. Scala, F. W. Starr, F. Sciortino, and H. E. Stanley. 2000. Instantaneous normal mode analysis of supercooled water. Phys. Rev. Lett. 84:4605-4608.
-
(2000)
Phys. Rev. Lett
, vol.84
, pp. 4605-4608
-
-
La Nave, E.1
Scala, A.2
Starr, F.W.3
Sciortino, F.4
Stanley, H.E.5
-
16
-
-
0035442850
-
Dynamics of supercooled water in configuration space
-
La Nave, E., A. Scala, F. W. Starr, H. E. Stanley, and F. Sciortino. 2001. Dynamics of supercooled water in configuration space. Phys. Rev. E. 64:036102.
-
(2001)
Phys. Rev. E
, vol.64
, pp. 036102
-
-
La Nave, E.1
Scala, A.2
Starr, F.W.3
Stanley, H.E.4
Sciortino, F.5
-
17
-
-
45849154867
-
Configuration space connectivity across the fragile-to-strong transition in silica
-
La Nave, E., H. E. Stanley, and F. Sciortino. 2002. Configuration space connectivity across the fragile-to-strong transition in silica. Phys. Rev. Lett. 88:035501.
-
(2002)
Phys. Rev. Lett
, vol.88
, pp. 035501
-
-
La Nave, E.1
Stanley, H.E.2
Sciortino, F.3
-
18
-
-
0034498108
-
Entropy, dynamics, and instantaneous normal modes in a random energy model
-
Keyes, T. 2000. Entropy, dynamics, and instantaneous normal modes in a random energy model. Phys. Rev. E. 62:7905-7908.
-
(2000)
Phys. Rev. E
, vol.62
, pp. 7905-7908
-
-
Keyes, T.1
-
19
-
-
58849129946
-
Imaginary frequency, unstable modes, and relaxation dynamics in liquids
-
Q. Cui and I. Bahar, editors. Chapman and Hall/CRC, Boca Raton, FL
-
Keyes, T. 2006. Imaginary frequency, unstable modes, and relaxation dynamics in liquids. In Normal Mode Analysis: Theory and Applications to Biological and Chemical Systems. Q. Cui and I. Bahar, editors. Chapman and Hall/CRC, Boca Raton, FL. 253-279.
-
(2006)
Normal Mode Analysis: Theory and Applications to Biological and Chemical Systems
, pp. 253-279
-
-
Keyes, T.1
-
20
-
-
36449004717
-
Normal mode analysis of liquid CS2: Velocity correlation functions and self-diffusion constants
-
Moore, P., and T. Keyes. 1994. Normal mode analysis of liquid CS2: velocity correlation functions and self-diffusion constants. J. Chem. Phys. 100:6709-6717.
-
(1994)
J. Chem. Phys
, vol.100
, pp. 6709-6717
-
-
Moore, P.1
Keyes, T.2
-
21
-
-
0005538815
-
Instantaneous normal mode analysis of liquid water
-
Cho, M. 1994. Instantaneous normal mode analysis of liquid water. J. Chem. Phys. 100:6672-6683.
-
(1994)
J. Chem. Phys
, vol.100
, pp. 6672-6683
-
-
Cho, M.1
-
22
-
-
3743110116
-
Instantaneous normal modes and the glass transition
-
Bembenek, S. D., and B. B. Laird. 1995. Instantaneous normal modes and the glass transition. Phys. Rev. Lett. 74:936-939.
-
(1995)
Phys. Rev. Lett
, vol.74
, pp. 936-939
-
-
Bembenek, S.D.1
Laird, B.B.2
-
23
-
-
0000916053
-
An instantaneous normal mode description of relaxation in supercooled liquids
-
Keyes, T., G. V. Vijayadamodar, and U. Zurcher. 1997. An instantaneous normal mode description of relaxation in supercooled liquids. J. Chem. Phys. 106:4651-1657.
-
(1997)
J. Chem. Phys
, vol.106
, pp. 4651-1657
-
-
Keyes, T.1
Vijayadamodar, G.V.2
Zurcher, U.3
-
25
-
-
3843048901
-
Harmonic dynamics in supercooled liquids: The case of water
-
Sciortino, F., and P. Tartaglia. 1997. Harmonic dynamics in supercooled liquids: the case of water. Phys. Rev. Lett. 78:2385-2388.
-
(1997)
Phys. Rev. Lett
, vol.78
, pp. 2385-2388
-
-
Sciortino, F.1
Tartaglia, P.2
-
26
-
-
0010167496
-
Can imaginary instantaneous normal mode frequencies predict barriers to self-diffusion?
-
Gezelter, J. D., E. Rabani, and B. J. Berne. 1997. Can imaginary instantaneous normal mode frequencies predict barriers to self-diffusion? J. Chem. Phys. 107:4618-1627.
-
(1997)
J. Chem. Phys
, vol.107
, pp. 4618-1627
-
-
Gezelter, J.D.1
Rabani, E.2
Berne, B.J.3
-
27
-
-
0001764070
-
Three-flavor instantaneous normal mode formalism: Diffusion, harmonicity, and the potential energy landscape of liquid CS2
-
Li, W. X., T. Keyes, and F. Sciortino. 1998. Three-flavor instantaneous normal mode formalism: diffusion, harmonicity, and the potential energy landscape of liquid CS2. J. Chem. Phys. 108:252-260.
-
(1998)
J. Chem. Phys
, vol.108
, pp. 252-260
-
-
Li, W.X.1
Keyes, T.2
Sciortino, F.3
-
28
-
-
18144379379
-
Instantaneous normal mode theory of diffusion and the potential energy landscape: Application to supercooled liquid
-
Li, W. X., and T. Keyes. 1999. Instantaneous normal mode theory of diffusion and the potential energy landscape: application to supercooled liquid. J. Chem. Phys. 111:5503-5513.
-
(1999)
J. Chem. Phys
, vol.111
, pp. 5503-5513
-
-
Li, W.X.1
Keyes, T.2
-
29
-
-
33645835270
-
Normal mode theory of diffusion in liquids for a broad temperature range
-
Keyes, T. 1995. Normal mode theory of diffusion in liquids for a broad temperature range. J. Chem. Phys. 103:9810-9812.
-
(1995)
J. Chem. Phys
, vol.103
, pp. 9810-9812
-
-
Keyes, T.1
-
30
-
-
0008994613
-
Extracting the energy barrier distribution of a disordered system from the instantaneous normal mode density of states: Applications to peptides and proteins
-
Straub, J. E., and J. K. Choi. 1994. Extracting the energy barrier distribution of a disordered system from the instantaneous normal mode density of states: applications to peptides and proteins. J. Phys. Chem. 98:10978-10987.
-
(1994)
J. Phys. Chem
, vol.98
, pp. 10978-10987
-
-
Straub, J.E.1
Choi, J.K.2
-
32
-
-
0042322523
-
Vibrational frequency shifts and relaxation rates for a selected vibrational mode in cytochrome c
-
Bu, L., and J. E. Straub. 2003. Vibrational frequency shifts and relaxation rates for a selected vibrational mode in cytochrome c. Biophys. J. 85:1429-1439.
-
(2003)
Biophys. J
, vol.85
, pp. 1429-1439
-
-
Bu, L.1
Straub, J.E.2
-
33
-
-
0024976853
-
Dynamical transition of myoglobin revealed by inelastic neutron scattering
-
Doster, W., S. Cusack, and W. Petry. 1989. Dynamical transition of myoglobin revealed by inelastic neutron scattering. Nature. 337: 754-756.
-
(1989)
Nature
, vol.337
, pp. 754-756
-
-
Doster, W.1
Cusack, S.2
Petry, W.3
-
34
-
-
0019516596
-
Dynamics of metmyoglobin crystals investigated by nuclear gamma resonance absorption
-
Parak, F., E. N. Frolov, R. L. Mossbauer, and V. I. Goldanskii. 1981. Dynamics of metmyoglobin crystals investigated by nuclear gamma resonance absorption. J. Mol. Biol. 145:825-833.
-
(1981)
J. Mol. Biol
, vol.145
, pp. 825-833
-
-
Parak, F.1
Frolov, E.N.2
Mossbauer, R.L.3
Goldanskii, V.I.4
-
35
-
-
0026606219
-
Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320K
-
Tilton, R. F., Jr., J. C. Dewan, and G. A. Petsko. 1992. Effects of temperature on protein structure and dynamics: x-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320K. Biochemistry. 31:2469-2481.
-
(1992)
Biochemistry
, vol.31
, pp. 2469-2481
-
-
Tilton Jr., R.F.1
Dewan, J.C.2
Petsko, G.A.3
-
36
-
-
0034163362
-
Enzyme activity and dynamics: Xylanase activity in the absence of fast anharmonic dynamics
-
Dunn, R. V., V. Réat, J. L. Finney, M. Ferrand, J. C. Smith, et al. 2000. Enzyme activity and dynamics: xylanase activity in the absence of fast anharmonic dynamics. Biochem. J. 346:355-358.
-
(2000)
Biochem. J
, vol.346
, pp. 355-358
-
-
Dunn, R.V.1
Réat, V.2
Finney, J.L.3
Ferrand, M.4
Smith, J.C.5
-
37
-
-
0036193327
-
Temperature dependence of protein dynamics: Computer simulation analysis of neutron scattering properties
-
Hayward, J. A., and J. C. Smith. 2002. Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties. Biophys. J. 82:1216-1225.
-
(2002)
Biophys. J
, vol.82
, pp. 1216-1225
-
-
Hayward, J.A.1
Smith, J.C.2
-
38
-
-
0025091840
-
Temperature-dependence of myoglobin dynamics: Neutron spectra calculated from molecular dynamics simulations of myoglobin
-
Smith, J. C., K. Kuczera, and M. Karplus. 1990. Temperature-dependence of myoglobin dynamics: neutron spectra calculated from molecular dynamics simulations of myoglobin. Proc. Natl. Acad. Sci. USA. 87:1601-1605.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 1601-1605
-
-
Smith, J.C.1
Kuczera, K.2
Karplus, M.3
-
39
-
-
0034257988
-
Glasslike dynamical behavior of the plastocyanin hydration water
-
Bizzarri, A. R., A. Paciaroni, and S. Cannistraro. 2000. Glasslike dynamical behavior of the plastocyanin hydration water. Phys. Rev. E. 62:3991-3999.
-
(2000)
Phys. Rev. E
, vol.62
, pp. 3991-3999
-
-
Bizzarri, A.R.1
Paciaroni, A.2
Cannistraro, S.3
-
40
-
-
0027491027
-
Thermal motions and function of bacteriorhodopsin in purple membranes: Effects of temperature and hydration studied by neutron scattering
-
Ferrand, M., A. J. Dianoux, W. Petry, and G. Zaccai. 1993. Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering. Proc. Natl. Acad. Sci. USA. 90:9668-9672.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 9668-9672
-
-
Ferrand, M.1
Dianoux, A.J.2
Petry, W.3
Zaccai, G.4
-
41
-
-
0019135979
-
Evidence for a correlation between the photoinduced electron transfer and dynamic properties of the chromatophore membranes from Rhodospirillum rubrum
-
Parak, F., E. N. Frolov, A. A. Kononenko, R. L. Mossbauer, V. I. Gold-anskii, et al. 1980. Evidence for a correlation between the photoinduced electron transfer and dynamic properties of the chromatophore membranes from Rhodospirillum rubrum. FEBS Lett. 117:368-372.
-
(1980)
FEBS Lett
, vol.117
, pp. 368-372
-
-
Parak, F.1
Frolov, E.N.2
Kononenko, A.A.3
Mossbauer, R.L.4
Gold-anskii, V.I.5
-
42
-
-
0034730143
-
Solvent dependence of dynamic transitions in protein solutions
-
Réat, V., R. Dunn, M. Ferrand, J. L. Finney, R. M. Daniel, et al. 2000. Solvent dependence of dynamic transitions in protein solutions. Proc. Natl. Acad. Sci. USA. 97:9961-9966.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 9961-9966
-
-
Réat, V.1
Dunn, R.2
Ferrand, M.3
Finney, J.L.4
Daniel, R.M.5
-
43
-
-
23244445783
-
Enzyme activity and flexibility at very low hydration
-
Kurkal, V., R. M. Daniel, J. L. Finney, M. Tehei, R. V. Dunn, et al. 2005. Enzyme activity and flexibility at very low hydration. Biophys. J. 89:1282-1287.
-
(2005)
Biophys. J
, vol.89
, pp. 1282-1287
-
-
Kurkal, V.1
Daniel, R.M.2
Finney, J.L.3
Tehei, M.4
Dunn, R.V.5
-
44
-
-
35949020263
-
Localized fluidity modes and the topology of the constant-potential-energy hypersurfaces of Lennard-Jones matter
-
Cotterill, R. M. J., and J. U. Madsen. 1986. Localized fluidity modes and the topology of the constant-potential-energy hypersurfaces of Lennard-Jones matter. Phys. Rev. B. 33:262-268.
-
(1986)
Phys. Rev. B
, vol.33
, pp. 262-268
-
-
Cotterill, R.M.J.1
Madsen, J.U.2
-
45
-
-
0000555202
-
Unstable modes in ionic melts
-
Riberio, M. C. C., and P. A. Madden. 1998. Unstable modes in ionic melts. J. Chem. Phys. 108:3256-3263.
-
(1998)
J. Chem. Phys
, vol.108
, pp. 3256-3263
-
-
Riberio, M.C.C.1
Madden, P.A.2
-
46
-
-
0034248192
-
Role of the unstable directions in the equilibrium and aging dynamics of supercooled liquids
-
Donati, C., F. Sciortino, and P. Tartaglia. 2000. Role of the unstable directions in the equilibrium and aging dynamics of supercooled liquids. Phys. Rev. Lett. 85:1464-1467.
-
(2000)
Phys. Rev. Lett
, vol.85
, pp. 1464-1467
-
-
Donati, C.1
Sciortino, F.2
Tartaglia, P.3
-
47
-
-
0034510935
-
Saddles in the energy landscape probed by supercooled liquids
-
Angelani, L., R. Di Leonardo, G. Ruocco, A. Scala, and F. Sciortino. 2000. Saddles in the energy landscape probed by supercooled liquids. Phys. Rev. Lett. 85:5356-5359.
-
(2000)
Phys. Rev. Lett
, vol.85
, pp. 5356-5359
-
-
Angelani, L.1
Di Leonardo, R.2
Ruocco, G.3
Scala, A.4
Sciortino, F.5
-
49
-
-
0028233375
-
Crystal structure of toxin II from the scorpion Androctonus australis Hector refined at 1.3 A resolution
-
Housset, D., C. Habersetzer-Rochat, J. P. Astier, and J. C. Fontecilla-Camps. 1994. Crystal structure of toxin II from the scorpion Androctonus australis Hector refined at 1.3 A resolution. J. Mol. Biol. 238:88-103.
-
(1994)
J. Mol. Biol
, vol.238
, pp. 88-103
-
-
Housset, D.1
Habersetzer-Rochat, C.2
Astier, J.P.3
Fontecilla-Camps, J.C.4
-
50
-
-
0034715463
-
Amplitudes and frequencies of protein dynamics: Analysis of discrepancies between neutron scattering and molecular dynamics simulations
-
Tarek, M., G. J. Martyna, and D. J. Tobias. 2000. Amplitudes and frequencies of protein dynamics: Analysis of discrepancies between neutron scattering and molecular dynamics simulations. J. Am. Chem. Soc. 122:10450-10451.
-
(2000)
J. Am. Chem. Soc
, vol.122
, pp. 10450-10451
-
-
Tarek, M.1
Martyna, G.J.2
Tobias, D.J.3
-
51
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swami-nathan, et al. 1983. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4:187-217.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swami-nathan, S.5
-
52
-
-
0348244547
-
All-atom empirical force field for nucleic acids: I. Parameter optimization based on small moleculeand condensed phase macromolecular target data
-
Foloppe, N., and A. MacKerell, Jr. 2000. All-atom empirical force field for nucleic acids: I. Parameter optimization based on small moleculeand condensed phase macromolecular target data. J. Comput. Chem. 21:86-104.
-
(2000)
J. Comput. Chem
, vol.21
, pp. 86-104
-
-
Foloppe, N.1
MacKerell Jr., A.2
-
53
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, J. D. Madura, R. W. Impey, and M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
54
-
-
33846823909
-
Particle mesh Ewald: An N log(N) method for Ewald sums in large systems
-
Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald: an N log(N) method for Ewald sums in large systems. J. Chem. Phys. 98:10089-10092.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
55
-
-
0000988129
-
Protein dynamics from Mossbauer spectra. The temperature dependence
-
Knapp, E. W., S. F. Fischer, and F. Parak. 1982. Protein dynamics from Mossbauer spectra. The temperature dependence. J. Phys. Chem. 86:5042-5047.
-
(1982)
J. Phys. Chem
, vol.86
, pp. 5042-5047
-
-
Knapp, E.W.1
Fischer, S.F.2
Parak, F.3
-
56
-
-
0041343122
-
Molecular dynamics decomposition of temperature-dependent elastic neutron scattering by a protein solution
-
Hayward, J. A., J. L. Finney, R. M. Daniel, and J. C. Smith. 2003. Molecular dynamics decomposition of temperature-dependent elastic neutron scattering by a protein solution. Biophys. J. 85:679-685.
-
(2003)
Biophys. J
, vol.85
, pp. 679-685
-
-
Hayward, J.A.1
Finney, J.L.2
Daniel, R.M.3
Smith, J.C.4
-
57
-
-
0346216028
-
Principal components of the protein dynamical transition
-
Tournier, A. L., and J. C. Smith. 2003. Principal components of the protein dynamical transition. Phys. Rev. Lett. 91:208106.
-
(2003)
Phys. Rev. Lett
, vol.91
, pp. 208106
-
-
Tournier, A.L.1
Smith, J.C.2
-
58
-
-
0042861647
-
Translational hydration water dynamics drives the protein glass transition
-
Tournier, A. L., J. Xu, and J. C. Smith. 2003. Translational hydration water dynamics drives the protein glass transition. Biophys. J. 85:1871-1875.
-
(2003)
Biophys. J
, vol.85
, pp. 1871-1875
-
-
Tournier, A.L.1
Xu, J.2
Smith, J.C.3
-
59
-
-
0015353157
-
Conformationally dependent low-frequency motions of proteins by laser Raman spectroscopy
-
Brown, K. G., S. C. Erfurth, E. W. Small, and W. L. Peticolas. 1972. Conformationally dependent low-frequency motions of proteins by laser Raman spectroscopy. Proc. Natl. Acad. Sci. USA. 69:1467-1469.
-
(1972)
Proc. Natl. Acad. Sci. USA
, vol.69
, pp. 1467-1469
-
-
Brown, K.G.1
Erfurth, S.C.2
Small, E.W.3
Peticolas, W.L.4
-
60
-
-
0032863425
-
Enzyme dynamics and activity: Time-scale dependence of dynamical transitions in glutamate dehydrogenase solution
-
Daniel, R. M., J. L. Finney, V. Reat, R. Dunn, M. Ferrand, et al. 1999. Enzyme dynamics and activity: time-scale dependence of dynamical transitions in glutamate dehydrogenase solution. Biophys. J. 77:2184-2190.
-
(1999)
Biophys. J
, vol.77
, pp. 2184-2190
-
-
Daniel, R.M.1
Finney, J.L.2
Reat, V.3
Dunn, R.4
Ferrand, M.5
-
61
-
-
20144366574
-
Protein-water displacement distributions
-
Doster, W., and M. Settles. 2005. Protein-water displacement distributions. Biochim. Biophys. Acta. 1749:173-186.
-
(2005)
Biochim. Biophys. Acta
, vol.1749
, pp. 173-186
-
-
Doster, W.1
Settles, M.2
-
62
-
-
0001706226
-
Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering
-
Doster, W., S. Cusack, and W. Petry. 1990. Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering. Phys. Rev. Lett. 65:1080-1083.
-
(1990)
Phys. Rev. Lett
, vol.65
, pp. 1080-1083
-
-
Doster, W.1
Cusack, S.2
Petry, W.3
-
64
-
-
33646945580
-
Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution
-
Igumenova, T. I., K. K. Frederick, and A. J. Wand. 2006. Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution. Chem. Rev. 106:1672-1699.
-
(2006)
Chem. Rev
, vol.106
, pp. 1672-1699
-
-
Igumenova, T.I.1
Frederick, K.K.2
Wand, A.J.3
-
66
-
-
0030862281
-
Water-coupled low-frequency modes of myoglobin and lysozyme observed by inelastic neutron scattering
-
Diehl, M., W. Doster, W. Petry, and H. Schober. 1997. Water-coupled low-frequency modes of myoglobin and lysozyme observed by inelastic neutron scattering. Biophys. J. 73:2726-2732.
-
(1997)
Biophys. J
, vol.73
, pp. 2726-2732
-
-
Diehl, M.1
Doster, W.2
Petry, W.3
Schober, H.4
-
67
-
-
0000108738
-
The influence of protein dynamics on Mossbauer spectra
-
Knapp, E. W., S. F. Fischer, and F. Parak. 1983. The influence of protein dynamics on Mossbauer spectra. J. Chem. Phys. 78:4701-1711.
-
(1983)
J. Chem. Phys
, vol.78
, pp. 4701-1711
-
-
Knapp, E.W.1
Fischer, S.F.2
Parak, F.3
-
68
-
-
0001647144
-
Anharmonicity and localization of atomic vibrations in vitreous silica
-
Taraskin, S. N., and S. R. Elliott. 1999. Anharmonicity and localization of atomic vibrations in vitreous silica. Phys. Rev. B. 59:8572-8585.
-
(1999)
Phys. Rev. B
, vol.59
, pp. 8572-8585
-
-
Taraskin, S.N.1
Elliott, S.R.2
-
70
-
-
27144554056
-
Onsets of anharmonicity in protein dynamics
-
Roh, J. H., V. N. Novikov, R. B. Gregory, J. E. Curtis, Z. Chowdhuri, et al. 2005. Onsets of anharmonicity in protein dynamics. Phys. Rev. Lett. 95, 038101-1-038101-4.
-
(2005)
Phys. Rev. Lett
, vol.95
-
-
Roh, J.H.1
Novikov, V.N.2
Gregory, R.B.3
Curtis, J.E.4
Chowdhuri, Z.5
-
71
-
-
33749487679
-
Influence of hydration on the dynamics of lysozyme
-
Roh, J. H., J. E. Curtis, S. Azzam, V. N. Novikov, I. Peral, et al. 2006. Influence of hydration on the dynamics of lysozyme. Biophys. J. 91:2573-2588.
-
(2006)
Biophys. J
, vol.91
, pp. 2573-2588
-
-
Roh, J.H.1
Curtis, J.E.2
Azzam, S.3
Novikov, V.N.4
Peral, I.5
-
72
-
-
0030927638
-
Picosecond dynamical changes on denaturation of yeast phosphoglycerate kinase revealed by quasielastic neutron scattering
-
Receveur, V., P. Calmettes, J. C. Smith, M. Desmadril, G. Coddens, et al. 1997. Picosecond dynamical changes on denaturation of yeast phosphoglycerate kinase revealed by quasielastic neutron scattering. Proteins Struct. Funct. Genet. 28:380-387.
-
(1997)
Proteins Struct. Funct. Genet
, vol.28
, pp. 380-387
-
-
Receveur, V.1
Calmettes, P.2
Smith, J.C.3
Desmadril, M.4
Coddens, G.5
-
73
-
-
47149091098
-
Methyl group dynamics and the onset of anharmonicity in myoglobin
-
Krishnan, M., V. Kurkal-Siebert, and J. C. Smith. 2008. Methyl group dynamics and the onset of anharmonicity in myoglobin. J. Phys. Chem. B. 112:5522-5533.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 5522-5533
-
-
Krishnan, M.1
Kurkal-Siebert, V.2
Smith, J.C.3
-
74
-
-
4243492437
-
Hidden structure in liquids
-
Stillinger, F. H., and T. A. Weber. 1982. Hidden structure in liquids. Phys. Rev. A. 25:978-989.
-
(1982)
Phys. Rev. A
, vol.25
, pp. 978-989
-
-
Stillinger, F.H.1
Weber, T.A.2
-
75
-
-
0024121530
-
Diffusion in a rough potential
-
Zwanzig, R. 1988. Diffusion in a rough potential. Proc. Natl. Acad. Sci. USA. 85:2029-2030.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2029-2030
-
-
Zwanzig, R.1
-
76
-
-
0036954662
-
Finding diffusive directions in supercooled liquids by partial minimization of the potential energy
-
Chowdhary, J., and T. Keyes. 2002. Finding diffusive directions in supercooled liquids by partial minimization of the potential energy. Physica A. 314:575-582.
-
(2002)
Physica A
, vol.314
, pp. 575-582
-
-
Chowdhary, J.1
Keyes, T.2
|