Contemporary and historical influences on the genetic structure of the estuarine-dependent Gulf killifish Fundulus grandis

Marine Ecology Progress Series

Volumn 373, Issue , 2008, Pages 111-121

  Williams, Dean A ^a,b   Brown, Stacy D ^a   Crawford, Douglas L ^a  

^a UNIVERSITY OF MIAMI   (United States)

^b TEXAS CHRISTIAN UNIVERSITY   (United States)

Author keywords

Equilibrium; Estuary; Genetic structure; Gulf of Mexico; Isolation by distance; Microsatellites

Indexed keywords

DISPERSAL; ESTUARY; FISH; GENE FLOW; GENETIC STRUCTURE; MARINE ENVIRONMENT; MIGRATION; POPULATION STRUCTURE; PRINCIPAL COMPONENT ANALYSIS; RECOLONIZATION;

ATLANTIC OCEAN; GULF OF MEXICO;

CYPRINODONTIFORMES; FUNDULUS GRANDIS;

EID: 58849089585     PISSN: 01718630     EISSN: None     Source Type: Journal    
DOI: 10.3354/meps07742     Document Type: Article

References (71)

1. Adams SM, Oleksiak MF, Duvernell DD (2005) Microsatellite primers for the Atlantic coastal killifish, Fundulus heteroclitus, with applicability to related Fundulus species. Mol Ecol Notes 5:275-277
2. Adams SM, Lindmeier JB, Duvernell DD (2006) Microsatellite analysis of the phylogeography, Pleistocene history and secondary contact hypotheses for the killifish, Fundulus heteroclitus. Mol Ecol 15:1109-1123
3. Austin JD, Loughheed SC, Boag PT (2004) Controlling for the effects of history and nonequilibrium conditions in gene flow estimates in northern bullfrog (Rana catesbeiana) populations. Genetics 168:1491-1506
4. Avise JC (1996) Toward a regional conservation genetics perspective: phylogeography of faunas in the southeastern United States. In: Avise JC, Hamrick JL (eds) Conservation genetics. Chapman & Hall, New York, p 431-470
5. Avise JC (2000) Phylogeography. Harvard University Press, Cambridge, MA
6. Avise JC, Reeb CA, Saunders NC (1987) Geographic population structure and species differences in mitochondrial DNA of mouthbrooding marine catfishes (Ariidae) and demersal spawning toadfishes (Batrachoididae). Evolution 41:991-1002
7. Ball AO, Chapman RW (2003) Population genetic analysis of white shrimp, Litopenaeus setiferus, using microsatellite genetic markers. Mol Ecol 12:2319-2330
8. Barnwell FH, Thurman CL (1984) Taxonomy and biogeography of the fiddler crabs (Ocypodidae, genus Uca) of the Atlantic and Gulf coasts of eastern North America. Zool J Linn Soc 81:23-87
9. Beheregaray LB, Sunnucks P (2001) Fine-scale genetic structure, estuarine colonization and incipient speciation in the marine silverside fish Odontesthes argentinensis. Mol Ecol 10:2849-2866
10. Bert TM (1986) Speciation in western Atlantic stone crabs (genus Menippe): the role of geological processes and climatic events in the formation and distribution of species. Mar Biol 93:157-170
11. Bilodeau AL, Felder DL, Neigel JE (2005) Population structure at two geographic scales in the burrowing crustacean Callichirus islagrande (Decapoda, Thalassinidea): historical and contemporary barriers to planktonic dispersal. Evolution 59:2125-2138
12. Bilton DT, Paula J, Bishop JDD (2002) Dispersal, genetic differentiation and speciation in estuarine organisms. Estuar Coast Shelf Sci 55:937-952
13. Blandon LR, Ward R, King TL, Karel WJ, Monaghan JP (2001) Preliminary genetic population structure of southern flounder, Paralichthys lethostigma, along the Atlantic Coast and Gulf of Mexico. Fish Bull 99:671-678
14. Bloom AL (1983) Sea level and coastal morphology of the United States through the late Wisconsin glacial maximum. In: Porter SC (ed) The Late Pleistocene, Vol 1. University of Minnesota, Minneapolis, MN, p 215-229
15. Briggs JC (1974) Marine zoogeography. McGraw-Hill, New York
16. Brookfield JFY (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol 5:453-455
17. Brunner CA (1982) Paleoceanography of surface waters in the Gulf of Mexico during the late Quanternary. Quat Res 17:105-119
18. Burridge CP, Hurt AC, Farrington LW, Coutin PC, Austin CM (2004) Stepping stone gene flow in an estuarine-dwelling sparid from south-east Australia. J Fish Biol 64:805-819
19. Castric V, Bernatchez L (2003) The rise and fall of isolation by distance in the anadromous brook charr (Salvelinus fontinalis Mitchill). Genetics 163:983-996
20. Chenoweth SF, Hughes JM (2003) Oceanic interchange and nonequilibrium population structure in the estuarine dependent Indo-Pacific tasselfish, Polynemus sheridani. Heredity 80:187-197
21. Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014
22. Cornuet JM, Piry S, Luikart G, Estoup A, Solignac M (1999) New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153:1989-2000
23. Crow JF, Aoki K (1984) Group selection for a polygenic behavioral trait: estimating the degree of population subdivision. Proc Natl Acad Sci USA 81:6073-6077
24. Durand JD, Tine M, Panfili J, Thiaw OT, Lae R (2005) Impact of glaciations and geographic distance on the genetic structure of a tropical estuarine fish, Ethmalosa fimbriata (Clupeidae, S. Bowdich, 1825). Mol Phylogenet Evol 36:277-287
25. Duvernell DD, Lindmeier JB, Faust KE, Whitehead A (2008) Relative influences of historical and contemporary forces shaping the distribution of genetic variation in the Atlantic killifish, Fundulus heteroclitus. Mol Ecol 17:1344-1360
26. Engle VD, Summers JK (2000) Biogeography of benthic macroinvertebrates in estuaries along the Gulf of Mexico and western Atlantic coasts. Hydrobiologia 436:17-33
27. Estoup A, Jarne P, Cornuet JM (2002) Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis. Mol Ecol 11:1591-1604
28. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611-2620
29. Felder DL, Staton JL (1994) Genetic differentiation in trans-Floridian species complexes of Sesarma and Uca (Decapoda, Brachyura). J Crustac Biol 14:191-209
30. Gold JR, Richardson LR (1998) Mitochondrial DNA diversification and population structure in fishes from the Gulf of Mexico and western Atlantic. J Hered 89:404-414
31. Gold JR, Turner TF (2002) Population structure of red drum (Sciaenops ocellatus) in the northern Gulf of Mexico, as inferred from variation in nuclear-encoded microsatellites. Mar Biol 140:249-265
32. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available at: http://www2.unil.ch/popgen/ softwares/fstat.htm
33. Goudet J, Raymond M, deMeeus T, Rousset F (1996) Testing differentiation in diploid populations. Genetics 144:1933-1940
34. Greeley MS, MacGregor R III (1983) Annual and semilunar reproductive cycles of the Gulf killifish, Fundulus grandis, on the Alabama Gulf coast. Copeia 1983:711-718
35. Greenwood MFD, Stevens PW, Matheson RE Jr (2006) Effects of the 2004 hurricanes on the fish assemblages in two proximate southwest Florida estuaries: change in the context of interannual variability. Estuar Coasts 29:985-996
36. Grosberg R, Cunningham CW (2001) Genetic structure in the sea: from populations to communities. In: Bertness MD, Gaines S, Hay ME (eds) Marine community ecology. Sinauer Associates, Sunderland, MA, p 61-84
37. Gurgel CFD, Fredericq S, Norris JN (2004) Phylogeography of Gracilana tikvahiae (Gracilariaceae, Rhodophyta): a study of genetic discontinuity in a continuously distributed species based on molecular evidence. J Phycol 40:748-758
38. Haney RA, Silliman BR, Fry AJ, Layman CA, Rand DM (2007) The Pleistocene history of the sheepshead minnow (Cyprinodon variegatus): non-equilibrium evolutionary dynamics within a diversifying species complex. Mol Phylogenet Evol 43(3):743-754
39. Harrison JS (2004) Evolution, biogeography, and the utility of mitochondrial 16s and COI genes in phylogenetic analysis of the crab genus Austinixa (Decapoda: Pinnotheridae). Mol Phylogenet Evol 30:743-754
40. Heist EJ, Gold JR (2000) DNA microsatellite loci and genetic structure of red snapper in the Gulf of Mexico. Trans Am Fish Soc 129:469-475
41. Herke SW, Foltz DW (2002) Phylogeography of two squid (Loligo pealei and L. plei) in the Gulf of Mexico and northwestern Atlantic Ocean. Mar Biol 140:103-115
42. Hewitt G (2000) The genetic legacy of the Quaternary ice ages. Nature 405:907-913
43. Hutchison DW, Templeton AR (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution 53:1898-1914
44. Imbrie J, McIntyre A, Moore TCJ (1983) The ocean around North America at the last glacial maximum. In: Porter SC (ed) The Late Pleistocene, Vol 1. University of Minnesota, Minneapolis, MN, p 230-238
45. Kimura M, Weiss GH (1964) The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics 49:561-576
46. Lee D, Gilbert CR, Hocutt CH, Jenkins RE, McAllister DE, Stauffer JR Jr (1980) Atlas of North American freshwater fishes. North Carolina State Museum of Natural History, Raleigh
47. Lemaire C, Allegrucci G, Naciri M, Bahri-Sfar L, Kara H, Bonhomme F (2000) Do discrepancies between microsatellite and allozyme variation reveal differential selection between sea and lagoon in the sea bass (Dicentrarchus labrax)? Mol Ecol 9:457-467
48. Luikart G, Allendorf FW, Cornuet JM, Sherwin WB (1998) Distortion of allele frequency distributions provides a test for recent population bottlenecks. J Hered 89:238-247
49. McClure MR, McEachran JD (1992) Hybridization between Prionotus alatus and P. paralatus in the Northern Gulf of Mexico (Pisces, Triglidae). Copeia 1992:1039-1046
50. McIntyre A, Kipp AG, Be AWH, Crowley T and others (1976) Glacial North America 18,000 years ago: a climate reconstruction. In: Cline RM, Hays JD (ed) Late Quaternary paleoceanography and paleoclimatology. Geological Society of America, Boulder, CO, p 43-76
51. Pampoulie C, Gysels ES, Maes GE, Hellemans B, Leentjes V, Jones AG, Volckaert FAM (2004) Evidence for fine-scale genetic structure and estuarine colonisation in a potential high gene flow marine goby (Pomatoschistus minutus). Heredity 92:434-445
52. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6:288-295
53. Piry S, Luikart G, Cornuet JM (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J Hered 90:502-503
54. Piry S, Alapetite A, Cornuet JM, Paetkau D, Baudouin L, Estoup A (2004) GeneClass2: a software for genetic assignment and first-generation migrant detection. J Hered 95:536-539
55. Pritchard JK, Wen W (2003) Documentation for structure software: version 2.2. Available at: http://pritch.bsd.uchicago.edu
56. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
57. Purcell JFH, Cowen RK, Hughes CR, Williams DA (2006) Weak genetic structure indicates strong dispersal limits: a tale of two coral reef fish. Proc R Soc Lond B 273:1483-1490
58. Rannala B, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proc Natl Acad Sci USA 94:9197-9201
59. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and eucumenicism. J Hered 86:248-249
60. Reeb CA, Avise JC (1990) A genetic discontinuity in a continuously distributed species: mitochondrial DNA in the American oyster, Crassostrea virginica. Genetics 124:397-406
61. Skinner MA, Courtenay SC, Parker WR, Curry RA (2005) Site fidelity of mummichogs (Fundulus heteroclitus) in an Atlantic Canadian estuary. Water Qual Res J Can 40:288-298
62. Slatkin M (1993) Isolation by distance in equilibrium and nonequilibrium populations. Evolution 47:264-279
63. Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS (2006) Comparative phylogeography of unglaciated eastern North America. Mol Ecol 15:4261-4293
64. Stanley SM (1986) Anatomy of a regional mass extinction. Plio-Pleistocene decimation of the western Atlantic bivalve fauna. Palaios 1:17-36
65. Sweeney J, Deegan L, Garritt R (1998) Population size and site fidelity of Fundulus heteroclitus in a macrotidal saltmarsh creek. Biol Bull 195:238-239
66. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535-538
67. Waples RS (1998) Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. J Hered 89:438-450
68. Ward RD, Woodwark M, Skibinski DOF (1994) A comparison of genetic diversity levels in marine, fresh-water, and anadromous fishes. J Fish Biol 44:213-232
69. Watts RJ, Johnson MS (2004) Estuaries, lagoons and enclosed embayments: habitats that enhance population subdivision of inshore fishes. Mar Freshw Res 55:641-651
70. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
71. Whitehead A, Crawford DL (2006) Neutral and adaptive variation in gene expression. Proc Nat Acad Sci USA 103:5425-5430