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Volumn 191, Issue 2, 2009, Pages 651-660

Mutagenesis of region 4 of sigma 28 from chlamydia trachomatis defines determinants for protein-protein and protein-DNA interactions

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE BETA SUBUNIT;

EID: 58649100907     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01083-08     Document Type: Article
Times cited : (6)

References (50)
  • 1
    • 0032553125 scopus 로고    scopus 로고
    • Localization of a sigma70 binding site on the N terminus of the Escherichia coll RNA polymerase beta′ subunit
    • Arthur, T. M., and R. R. Burgess. 1998. Localization of a sigma70 binding site on the N terminus of the Escherichia coll RNA polymerase beta′ subunit. J. Biol. Chem. 273:31381-31387.
    • (1998) J. Biol. Chem , vol.273 , pp. 31381-31387
    • Arthur, T.M.1    Burgess, R.R.2
  • 3
    • 0027197403 scopus 로고
    • Molecular cloning and expression of hctB encoding a strain-variant chlamydial histone-like protein with DNA-binding activity
    • Brickman, T. J., C. E. Barry III, and T. Hackstadt. 1993. Molecular cloning and expression of hctB encoding a strain-variant chlamydial histone-like protein with DNA-binding activity. J. Bacteriol. 175:4274-4281.
    • (1993) J. Bacteriol , vol.175 , pp. 4274-4281
    • Brickman, T.J.1    Barry III, C.E.2    Hackstadt, T.3
  • 5
    • 42049122814 scopus 로고    scopus 로고
    • Regulation of bacterial RNA polymerase sigma factor activity: A structural perspective
    • Campbell, E. A., L. F. Westblade, and S. A. Darst. 2008. Regulation of bacterial RNA polymerase sigma factor activity: a structural perspective. Curr. Opin. Microbiol. 11:121-127.
    • (2008) Curr. Opin. Microbiol , vol.11 , pp. 121-127
    • Campbell, E.A.1    Westblade, L.F.2    Darst, S.A.3
  • 6
    • 0034907351 scopus 로고    scopus 로고
    • Colland, F., J. C. Rain, P. Gounon, A. Labigne, P. Legrain, and H. De Reuse. 2001. Identification of the Helicobacter pylori anti-sigma28 factor. Mol. Microbiol. 41:477-487.
    • Colland, F., J. C. Rain, P. Gounon, A. Labigne, P. Legrain, and H. De Reuse. 2001. Identification of the Helicobacter pylori anti-sigma28 factor. Mol. Microbiol. 41:477-487.
  • 7
    • 0028882486 scopus 로고
    • Functional analysis of the major outer membrane protein gene promoters of Chlamydia trachomatis
    • Douglas, A. L., and T. P. Hatch. 1995. Functional analysis of the major outer membrane protein gene promoters of Chlamydia trachomatis. J. Bacteriol. 177:6286-6289.
    • (1995) J. Bacteriol , vol.177 , pp. 6286-6289
    • Douglas, A.L.1    Hatch, T.P.2
  • 8
    • 0030907304 scopus 로고    scopus 로고
    • Activation of prokaryotic transcription through arbitrary protein-protein contacts
    • Dove, S. L., J. K. Joung, and A. Hochschild. 1997. Activation of prokaryotic transcription through arbitrary protein-protein contacts. Nature 386:627-630.
    • (1997) Nature , vol.386 , pp. 627-630
    • Dove, S.L.1    Joung, J.K.2    Hochschild, A.3
  • 9
    • 0034700165 scopus 로고    scopus 로고
    • Mechanism for a transcriptional activator that works at the isomerization step
    • Dove, S. L., F. W. Huang, and A. Hochschild. 2000. Mechanism for a transcriptional activator that works at the isomerization step. Proc. Natl. Acad. Sci. USA 97:13215-13220.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 13215-13220
    • Dove, S.L.1    Huang, F.W.2    Hochschild, A.3
  • 10
    • 0035688875 scopus 로고    scopus 로고
    • Bacterial two-hybrid analysis of interactions between region 4 of the sigma(70) subunit of RNA polymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa
    • Dove, S. L., and A. Hochschild. 2001. Bacterial two-hybrid analysis of interactions between region 4 of the sigma(70) subunit of RNA polymerase and the transcriptional regulators Rsd from Escherichia coli and AlgQ from Pseudomonas aeruginosa. J. Bacteriol. 183:6413-6421.
    • (2001) J. Bacteriol , vol.183 , pp. 6413-6421
    • Dove, S.L.1    Hochschild, A.2
  • 11
    • 0038354921 scopus 로고    scopus 로고
    • Region 4 of sigma as a target for transcription regulation
    • Dove, S. L., S. A. Darst, and A. Hochschild. 2003. Region 4 of sigma as a target for transcription regulation. Mol. Microbiol. 48:863-874.
    • (2003) Mol. Microbiol , vol.48 , pp. 863-874
    • Dove, S.L.1    Darst, S.A.2    Hochschild, A.3
  • 12
    • 4744373193 scopus 로고    scopus 로고
    • A hydrophobic patch on the flap-tip helix of E. coli RNA polymerase mediates sigma (70) region 4 function
    • Geszvain, K., T. M. Gruber, R. A. Mooney, C. A. Gross, and R. Landick. 2004. A hydrophobic patch on the flap-tip helix of E. coli RNA polymerase mediates sigma (70) region 4 function. J. Mol. Biol. 343:569-587.
    • (2004) J. Mol. Biol , vol.343 , pp. 569-587
    • Geszvain, K.1    Gruber, T.M.2    Mooney, R.A.3    Gross, C.A.4    Landick, R.5
  • 14
    • 0033852409 scopus 로고    scopus 로고
    • UPs and downs in bacterial transcription initiation: The role of the alpha subunit of RNA polymerase in promoter recognition
    • Gourse, R. L., W. Ross, and T. Gaal. 2000. UPs and downs in bacterial transcription initiation: the role of the alpha subunit of RNA polymerase in promoter recognition. Mol. Microbiol. 37:687-695.
    • (2000) Mol. Microbiol , vol.37 , pp. 687-695
    • Gourse, R.L.1    Ross, W.2    Gaal, T.3
  • 16
    • 58649094477 scopus 로고    scopus 로고
    • Hatch, T. P. 1999. Developmental biology, p 29-67. In R. S. Stephens (ed.), Chlamydia. Intracellular biology, pathogenesis, and immunity. American Society for Microbiology, Washington, DC.
    • Hatch, T. P. 1999. Developmental biology, p 29-67. In R. S. Stephens (ed.), Chlamydia. Intracellular biology, pathogenesis, and immunity. American Society for Microbiology, Washington, DC.
  • 17
    • 33645062674 scopus 로고    scopus 로고
    • Core of the partner switching signalling mechanism is conserved in the obligate intracellular pathogen Chlamydia trachomatis
    • Hua, L., P. S. Hefty, Y. J. Lee, Y. M. Lee, R. S. Stephens, and C. W. Price. 2006. Core of the partner switching signalling mechanism is conserved in the obligate intracellular pathogen Chlamydia trachomatis. Mol. Microbiol. 59: 623-636.
    • (2006) Mol. Microbiol , vol.59 , pp. 623-636
    • Hua, L.1    Hefty, P.S.2    Lee, Y.J.3    Lee, Y.M.4    Stephens, R.S.5    Price, C.W.6
  • 19
    • 0033765113 scopus 로고    scopus 로고
    • Functional modulation of Escherichia coli RNA polymerase
    • Ishihama, A. 2000. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol. 54:499-518.
    • (2000) Annu. Rev. Microbiol , vol.54 , pp. 499-518
    • Ishihama, A.1
  • 20
  • 21
    • 0032574843 scopus 로고    scopus 로고
    • A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase
    • Jishage, M., and A. Ishihama. 1998. A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase. Proc. Natl. Acad. Sci. USA 95:4953-4958.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 4953-4958
    • Jishage, M.1    Ishihama, A.2
  • 22
    • 33644885318 scopus 로고    scopus 로고
    • Genetic transplantation: Salmonella enterica serovar Typhimurium as a host to study sigma factor and anti-sigma factor interactions in genetically intractable systems
    • Karlinsey, J. E., and K. T. Hughes. 2006. Genetic transplantation: Salmonella enterica serovar Typhimurium as a host to study sigma factor and anti-sigma factor interactions in genetically intractable systems. J. Bacteriol. 188:103-114.
    • (2006) J. Bacteriol , vol.188 , pp. 103-114
    • Karlinsey, J.E.1    Hughes, K.T.2
  • 23
    • 0025338009 scopus 로고
    • Chlamydia trachomatis RNA polymerase major sigma subunit. Sequence and structural comparison of conserved and unique regions with Escherichia coli sigma 70 and Bacillus subtilis sigma 43
    • Koehler, J. E., R. R. Burgess, N. E. Thompson, and R. S. Stephens. 1990. Chlamydia trachomatis RNA polymerase major sigma subunit. Sequence and structural comparison of conserved and unique regions with Escherichia coli sigma 70 and Bacillus subtilis sigma 43. J. Biol. Chem. 265:13206-13214.
    • (1990) J. Biol. Chem , vol.265 , pp. 13206-13214
    • Koehler, J.E.1    Burgess, R.R.2    Thompson, N.E.3    Stephens, R.S.4
  • 24
    • 25144432264 scopus 로고    scopus 로고
    • Mutational analysis of Escherichia coli heat shock transcription factor sigma 32 reveals similarities with sigma 70 in recognition of the -35 promoter element and differences in promoter DNA melting and -10 recognition
    • Kourennaia, O. V., L. Tsujikawa, and P. L. Dehaseth. 2005. Mutational analysis of Escherichia coli heat shock transcription factor sigma 32 reveals similarities with sigma 70 in recognition of the -35 promoter element and differences in promoter DNA melting and -10 recognition. J. Bacteriol. 187:6762-6769.
    • (2005) J. Bacteriol , vol.187 , pp. 6762-6769
    • Kourennaia, O.V.1    Tsujikawa, L.2    Dehaseth, P.L.3
  • 26
    • 0026612797 scopus 로고
    • The sigma 70 family: Sequence conservation and evolutionary relationships
    • Lonetto, M., M. Gribskov, and C. A. Gross. 1992. The sigma 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174: 3843-3849.
    • (1992) J. Bacteriol , vol.174 , pp. 3843-3849
    • Lonetto, M.1    Gribskov, M.2    Gross, C.A.3
  • 27
    • 0032774446 scopus 로고    scopus 로고
    • DNA structure and novel amino and carboxyl termini of the Chlamydia sigma 70 analogue modulate promoter recognition
    • Mathews, S. A., and R. S. Stephens. 1999. DNA structure and novel amino and carboxyl termini of the Chlamydia sigma 70 analogue modulate promoter recognition. Microbiology 145:1671-8181.
    • (1999) Microbiology , vol.145 , pp. 1671-8181
    • Mathews, S.A.1    Stephens, R.S.2
  • 28
    • 0033759269 scopus 로고    scopus 로고
    • Identification and mapping of sigma-54 promoters in Chlamydia trachomatis
    • Mathews, S. A., and P. Timms. 2000. Identification and mapping of sigma-54 promoters in Chlamydia trachomatis. J. Bacteriol. 182:6239-6242.
    • (2000) J. Bacteriol , vol.182 , pp. 6239-6242
    • Mathews, S.A.1    Timms, P.2
  • 29
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in molecular genetics
    • Miller, J.H.1
  • 30
    • 27644560257 scopus 로고    scopus 로고
    • Sigma and RNA polymerase: An on-again, off-again relationship?
    • Mooney, R. A., S. A. Darst, and R. Landick. 2005. Sigma and RNA polymerase: an on-again, off-again relationship? Mol. Cell 20:335-345.
    • (2005) Mol. Cell , vol.20 , pp. 335-345
    • Mooney, R.A.1    Darst, S.A.2    Landick, R.3
  • 31
    • 0037308665 scopus 로고    scopus 로고
    • Bacterial RNA polymerases: The whole story
    • Murakami, K. S., and S. A. Darst. 2003. Bacterial RNA polymerases: the whole story. Curr. Opin. Struct. Biol. 13:31-39.
    • (2003) Curr. Opin. Struct. Biol , vol.13 , pp. 31-39
    • Murakami, K.S.1    Darst, S.A.2
  • 32
    • 0037123602 scopus 로고    scopus 로고
    • Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
    • Murakami, K. S., S. Masuda, E. A. Campbell, O. Muzzin, and S. A. Darst. 2002. Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex. Science 296:1285-1290.
    • (2002) Science , vol.296 , pp. 1285-1290
    • Murakami, K.S.1    Masuda, S.2    Campbell, E.A.3    Muzzin, O.4    Darst, S.A.5
  • 33
    • 0038561166 scopus 로고    scopus 로고
    • Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis
    • Nicholson, T. L., L. Olinger, K. Chong, G. Schoolnik, and R. S. Stephens. 2003. Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis. J. Bacteriol. 185:3179-3189.
    • (2003) J. Bacteriol , vol.185 , pp. 3179-3189
    • Nicholson, T.L.1    Olinger, L.2    Chong, K.3    Schoolnik, G.4    Stephens, R.S.5
  • 35
    • 15444366146 scopus 로고    scopus 로고
    • The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation
    • Nickels, B. E., S. J. Garrity, V. Mekler, L. Minakhin, K. Severinov, R. H. Ebright, and A. Hochschild. 2005. The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation. Proc. Natl. Acad. Sci. USA 102:4488-4493.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4488-4493
    • Nickels, B.E.1    Garrity, S.J.2    Mekler, V.3    Minakhin, L.4    Severinov, K.5    Ebright, R.H.6    Hochschild, A.7
  • 36
    • 58649116736 scopus 로고    scopus 로고
    • Schachter, J. 1999. Infection and diseases epidemiology, p. 139-169. In R. S. Stephens (ed.), Chlamydia. Intracellular biology, pathogenesis, and immunity. American Society for Microbiology, Washington, DC.
    • Schachter, J. 1999. Infection and diseases epidemiology, p. 139-169. In R. S. Stephens (ed.), Chlamydia. Intracellular biology, pathogenesis, and immunity. American Society for Microbiology, Washington, DC.
  • 37
    • 0033852951 scopus 로고    scopus 로고
    • Three temporal classes of gene expression during the Chlamydia trachomatis developmental cycle
    • Shaw, E. I., C. A. Dooley, E. R. Fischer, M. A. Scidmore, K. A. Fields, and T. Hackstadt. 2000. Three temporal classes of gene expression during the Chlamydia trachomatis developmental cycle. Mol. Microbiol. 37:913-925.
    • (2000) Mol. Microbiol , vol.37 , pp. 913-925
    • Shaw, E.I.1    Dooley, C.A.2    Fischer, E.R.3    Scidmore, M.A.4    Fields, K.A.5    Hackstadt, T.6
  • 38
    • 0034235888 scopus 로고    scopus 로고
    • Identification and characterization of promoters regulating tuf expression in Chlamydia trachomatis serovar F
    • Shen, L., Y. Shi, A. L. Douglas, T. P. Hatch, C. M. O'Connell, J. M. Chen, and Y. X. Zhang. 2000. Identification and characterization of promoters regulating tuf expression in Chlamydia trachomatis serovar F. Arch. Biochem. Biophys. 379:46-56.
    • (2000) Arch. Biochem. Biophys , vol.379 , pp. 46-56
    • Shen, L.1    Shi, Y.2    Douglas, A.L.3    Hatch, T.P.4    O'Connell, C.M.5    Chen, J.M.6    Zhang, Y.X.7
  • 39
    • 1642432873 scopus 로고    scopus 로고
    • Chlamydia trachomatis sigma28 recognizes the fliC promoter of Escherichia coli and responds to heat shock in chlamydiae
    • Shen, L., M. Li, and Y. X. Zhang. 2004. Chlamydia trachomatis sigma28 recognizes the fliC promoter of Escherichia coli and responds to heat shock in chlamydiae. Microbiology 150:205-215.
    • (2004) Microbiology , vol.150 , pp. 205-215
    • Shen, L.1    Li, M.2    Zhang, Y.X.3
  • 41
    • 1842766125 scopus 로고    scopus 로고
    • Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation
    • Sorenson, M. K., S. S. Ray, and S. A. Darst. 2004. Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation. Mol. Cell 14:127-138.
    • (2004) Mol. Cell , vol.14 , pp. 127-138
    • Sorenson, M.K.1    Ray, S.S.2    Darst, S.A.3
  • 42
    • 33750935130 scopus 로고    scopus 로고
    • Disulfide cross-linking indicates that FlgM-bound and free sigma28 adopt similar conformations
    • Sorenson, M. K., and S. A. Darst. 2006. Disulfide cross-linking indicates that FlgM-bound and free sigma28 adopt similar conformations. Proc. Natl. Acad. Sci. USA 103:16722-16727.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 16722-16727
    • Sorenson, M.K.1    Darst, S.A.2
  • 44
    • 0029847651 scopus 로고    scopus 로고
    • Identification of sequences necessary for transcription in vitro from the Chlamydia trachomatis rRNA P1 promoter
    • Tan, M., and J. N. Engel. 1996. Identification of sequences necessary for transcription in vitro from the Chlamydia trachomatis rRNA P1 promoter. J. Bacteriol. 178:6975-6982.
    • (1996) J. Bacteriol , vol.178 , pp. 6975-6982
    • Tan, M.1    Engel, J.N.2
  • 45
    • 0032529668 scopus 로고    scopus 로고
    • Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli
    • Whipple, F. W. 1998. Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli. Nucleic Acids Res. 26:3700-3706.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3700-3706
    • Whipple, F.W.1
  • 46
    • 0039820099 scopus 로고    scopus 로고
    • Eubacterial sigma-factors
    • Wosten, M. M. 1998. Eubacterial sigma-factors. FEMS Microbiol. Rev. 22: 127-150.
    • (1998) FEMS Microbiol. Rev , vol.22 , pp. 127-150
    • Wosten, M.M.1
  • 47
    • 0033987659 scopus 로고    scopus 로고
    • Generation of an AraC-araBAD promoter-regulated T7 expression system
    • Wycuff, D. R., and K. S. Matthews. 2000. Generation of an AraC-araBAD promoter-regulated T7 expression system. Anal. Biochem. 277:67-73.
    • (2000) Anal. Biochem , vol.277 , pp. 67-73
    • Wycuff, D.R.1    Matthews, K.S.2
  • 48
    • 0142030043 scopus 로고    scopus 로고
    • Sigma28 RNA polymerase regulates hctB,a late developmental gene in Chlamydia
    • Yu, H. H., and M. Tan. 2003. Sigma28 RNA polymerase regulates hctB,a late developmental gene in Chlamydia. Mol. Microbiol. 50:577-584.
    • (2003) Mol. Microbiol , vol.50 , pp. 577-584
    • Yu, H.H.1    Tan, M.2
  • 49
    • 33746591211 scopus 로고    scopus 로고
    • Mutational analysis of the promoter recognized by Chlamydia and Escherichia coli sigma(28) RNA polymerase
    • Yu, H. H., E. G. Di Russo, M. A. Rounds, and M. Tan. 2006. Mutational analysis of the promoter recognized by Chlamydia and Escherichia coli sigma(28) RNA polymerase. J. Bacteriol. 188:5524-5531.
    • (2006) J. Bacteriol , vol.188 , pp. 5524-5531
    • Yu, H.H.1    Di Russo, E.G.2    Rounds, M.A.3    Tan, M.4
  • 50
    • 33751580889 scopus 로고    scopus 로고
    • In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli
    • Yu, H. H., D. Kibler, and M. Tan. 2006. In silico prediction and functional validation of sigma28-regulated genes in Chlamydia and Escherichia coli.J. Bacteriol. 188:8206-8212.
    • (2006) J. Bacteriol , vol.188 , pp. 8206-8212
    • Yu, H.H.1    Kibler, D.2    Tan, M.3


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